Rh3DG192000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0008404
Physical Location & Seq
Reverse (-)
17116511 .. 17119722
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG192000.1

Sequence Viewer

Length: 537 bp
ATGGCGGAAGCTTCCGCTGCTCTCTGCTTCTCCCCCTTCTCTTCTTCCTTCTCTCCCGCCAAGCATCCCTCTCTCTCTTCTTTCTCCCGCGCTTTTTCTCCCAATTTTCCAATTTCCCATCCTTGCCCCTCCCGCCTCCTCCGCTTTCCCGCCAAATCCTCCTCCGATTCCCTCCCCGACGACCTCTTCAGCTTCTTTCCCTGGTCCGATGACTCCGAAATTCAATGGGTTCCTGAGGACAGAGTCACATTGTTCACTTCTGAGGGGCTGGTTCAGATTGGAGGCTCCATAGTCCCTCGCCGTGTCGCTTCTTCAGATAAGAAGAGGTCAAAGACTAGTCAAAGATATCAGCGGTTTCAAGAGAGTGATTATATGGATACAGAGCAGGGTCTGTGTCTGGGTGCTCTCTTTGATATTGCGGCAACAAATGGACTTGATATGGGCAGGAGGCTTTGTATACTTGGGTTTTGCCGTTCCATTGAGATGCTAAGCGATGTTGTGGAAGACACTGTGTTGGAACATGGCGGGGAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.67

Weight (kDa)

5.03

Isoelectric Point (pI)

66.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7811 PF25103 111 - 178 2.7e-33 Domain of unknown function (DUF7811)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 457
AccII CGCG 1 cut(s) 90
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 2 cut(s) 172, 297
AgsI TTSAA 2 cut(s) 224, 359
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 2 cut(s) 11, 192
AluI AGCT 2 cut(s) 11, 192
Alw21I GWGCWC 1 cut(s) 406
AlwNI CAGNNNCTG 1 cut(s) 391
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 219
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 204
AvaII GGWCC 1 cut(s) 204
AxyI CCTNAGG 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 1 cut(s) 4
BccI CCATC 1 cut(s) 126
BceAI ACGGC 2 cut(s) 285, 456
BciT130I CCWGG 1 cut(s) 202
BciVI GTATCC 1 cut(s) 370
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 1 cut(s) 336
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 2 cut(s) 18, 420
BlpI GCTNAGC 1 cut(s) 488
BlsI GCNGC 2 cut(s) 19, 421
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 231, 286
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 2 cut(s) 73, 474
BpiI GAAGAC 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 488
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bse21I CCTNAGG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 64, 118
BseMII CTCAG 2 cut(s) 225, 252
BseRI GAGGAG 2 cut(s) 128, 151
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 406
BslFI GGGAC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 488
BspCNI CTCAG 2 cut(s) 226, 253
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 231, 286
BssECI CCNNGG 1 cut(s) 200
BssNAI GTATAC 1 cut(s) 458
Bst1107I GTATAC 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 4 cut(s) 46, 82, 191, 317
BstDEI CTNAG 3 cut(s) 234, 261, 488
BstF5I GGATG 2 cut(s) 64, 118
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstMWI GCNNNNNNNGC 3 cut(s) 17, 132, 141
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 200
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 510
BstZ17I GTATAC 1 cut(s) 458
Bsu36I CCTNAGG 1 cut(s) 234
BsuI GTATCC 1 cut(s) 370
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 2 cut(s) 64, 118
BtsIMutI CAGTG 1 cut(s) 507
CaiI CAGNNNCTG 1 cut(s) 391
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 204
CviAII CATG 1 cut(s) 521
CviJI RGCY 5 cut(s) 11, 192, 268, 285, 451
CviKI_1 RGCY 5 cut(s) 11, 192, 268, 285, 451
DdeI CTNAG 3 cut(s) 234, 261, 488
Eam1104I CTCTTC 4 cut(s) 46, 82, 191, 317
EarI CTCTTC 4 cut(s) 46, 82, 191, 317
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 172, 297
Eco81I CCTNAGG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 200
EcoRV GATATC 1 cut(s) 347
FaeI CATG 1 cut(s) 524
FaiI YATR 7 cut(s) 290, 372, 374, 440, 458, 522, 535
FaqI GGGAC 1 cut(s) 278
FatI CATG 1 cut(s) 520
FauI CCCGC 5 cut(s) 64, 95, 140, 157, 518
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 2 cut(s) 18, 420
FokI GGATG 2 cut(s) 51, 105
Fsp4HI GCNGC 2 cut(s) 18, 420
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 18, 420
HhaI GCGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 3 cut(s) 167, 212, 243
Hpy166II GTNNAC 2 cut(s) 255, 458
Hpy188I TCNGA 6 cut(s) 166, 208, 217, 262, 276, 316
Hpy188III TCNNGA 2 cut(s) 233, 359
Hpy8I GTNNAC 2 cut(s) 255, 458
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 46, 58
HpyCH4III ACNGT 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 132, 141
HpyF3I CTNAG 3 cut(s) 234, 261, 488
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 7 cut(s) 187, 214, 246, 254, 371, 383, 430
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 2 cut(s) 73, 474
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 244
MboII GAAGA 7 cut(s) 33, 36, 69, 178, 303, 334, 515
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 3 cut(s) 103, 111, 219
MlyI GAGTC 2 cut(s) 206, 252
MmeI TCCRAC 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 482
MspA1I CMGCKG 2 cut(s) 17, 352
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 17, 132, 141
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 2 cut(s) 231, 286
NmuCI GTSAC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 167
PflFI GACNNNGTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 19, 421
PleI GAGTC 2 cut(s) 206, 251
PpsI GAGTC 2 cut(s) 206, 251
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 231, 286
PspPI GGNCC 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 391
PsyI GACNNNGTC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 482
SatI GCNGC 2 cut(s) 18, 420
Sau96I GGNCC 1 cut(s) 204
SchI GAGTC 2 cut(s) 206, 252
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 1 cut(s) 406
SetI ASST 5 cut(s) 13, 186, 194, 329, 534
SfaNI GCATC 2 cut(s) 73, 474
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 482
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 3 cut(s) 103, 111, 219
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 511
TasI AATT 3 cut(s) 103, 111, 219
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 1 cut(s) 167
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 244
TspRI CASTG 1 cut(s) 514
Tth111I GACNNNGTC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 457
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.