Rh3CG173400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008404
Physical Location & Seq
Forward (+)
15175542 .. 15178755
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG173400.1

Sequence Viewer

Length: 654 bp
ATGGCGGAAGCTTCCGCTGCTCTCTGCTTCTCCCCCTTCTCTTCTTCCTTCTCTCCCGCCAAGCATCCCTCTCTCTCTTCTTTCTCCCGCGCTTTTTCTCCCAATTTCCCAATTTCCCATCCTTGCCCCTCCCGCCTCCTCCGCTTTCCCGCCAAATCCTCCTCCGATTCCCTCCCCGACGACCTCTTCAGCTTCTTTCCCTGGTCCAATGACTCCGAAATTCAATGGGTTCCTGAGGACAGAGTCACATTGTTCACTTCTGAGGGGCTTGTTCAGATTGGAGGCTCCATAGTCCCTCGCCGTGTCGCTTCTTCGGATAAGAAGAGGTCAAAGACTAGTCAAAGATATCAGCGGTTTCAAGAGAGTGATTATATGGATACAGAGCAGGGTCTGTGCCTTGGTGCTCTCTTTGATATTGCGGCAACAAATGGACTAGATATGGGAAGGAGGCTTTGTATACTTGGGTTTTGCCGTTCCATTGAGATGCTAAGCGATGTTGTGGAAGACACTGTGTTGGAACATGGCGGGGAGGTATGTCCTGGTGCCATGTTCTGGTGTTTTAATATTGAGGTCTTTTTAGCATTCAGAATCATTTCATTATGTTATTGTTTAGTTGCTCAAAGGTATGTCTGTTTGAAATTGTCTCCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.19

Weight (kDa)

5.64

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7811 PF25103 111 - 179 1.5e-33 Domain of unknown function (DUF7811)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 542
AccB7I CCANNNNNTGG 1 cut(s) 552
AccI GTMKAC 1 cut(s) 457
AccII CGCG 1 cut(s) 90
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 552
AgsI TTSAA 3 cut(s) 224, 359, 637
AhlI ACTAGT 1 cut(s) 335
AjnI CCWGG 2 cut(s) 200, 538
AluBI AGCT 2 cut(s) 11, 192
AluI AGCT 2 cut(s) 11, 192
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 1 cut(s) 648
AlwNI CAGNNNCTG 1 cut(s) 391
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 592
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 204
AvaII GGWCC 1 cut(s) 204
AxyI CCTNAGG 1 cut(s) 234
BanI GGYRCC 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 1 cut(s) 4
BccI CCATC 1 cut(s) 126
BceAI ACGGC 2 cut(s) 285, 456
BciT130I CCWGG 2 cut(s) 202, 540
BciVI GTATCC 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 648
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 3 cut(s) 336, 434, 652
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 2 cut(s) 18, 420
BlpI GCTNAGC 1 cut(s) 488
BlsI GCNGC 2 cut(s) 19, 421
Bme1390I CCNGG 2 cut(s) 202, 540
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 3 cut(s) 231, 286, 544
BmrFI CCNGG 2 cut(s) 202, 540
BmsI GCATC 2 cut(s) 73, 474
BpiI GAAGAC 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 200, 397
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 552
Bse21I CCTNAGG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 202, 540
BseDI CCNNGG 2 cut(s) 200, 397
BseGI GGATG 2 cut(s) 64, 118
BseLI CCNNNNNNNGG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 225, 252
BseRI GAGGAG 2 cut(s) 128, 151
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 542
BsiHKAI GWGCWC 1 cut(s) 406
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 552
BsmAI GTCTC 1 cut(s) 648
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 581
Bsp1286I GDGCHC 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 488
BspCNI CTCAG 2 cut(s) 226, 253
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 231, 286, 544
BspT107I GGYRCC 1 cut(s) 542
BssECI CCNNGG 2 cut(s) 200, 397
BssNAI GTATAC 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 397
Bst1107I GTATAC 1 cut(s) 458
Bst2UI CCWGG 2 cut(s) 202, 540
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 4 cut(s) 46, 82, 191, 317
BstDEI CTNAG 3 cut(s) 234, 261, 488
BstF5I GGATG 2 cut(s) 64, 118
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstMAI GTCTC 1 cut(s) 648
BstMWI GCNNNNNNNGC 3 cut(s) 17, 132, 141
BstNI CCWGG 2 cut(s) 202, 540
BstSCI CCNGG 2 cut(s) 200, 538
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 510
BstZ17I GTATAC 1 cut(s) 458
Bsu36I CCTNAGG 1 cut(s) 234
BsuI GTATCC 1 cut(s) 370
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 2 cut(s) 64, 118
BtsIMutI CAGTG 1 cut(s) 507
CaiI CAGNNNCTG 1 cut(s) 391
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 204
CviAII CATG 2 cut(s) 521, 547
CviJI RGCY 5 cut(s) 11, 192, 268, 285, 451
CviKI_1 RGCY 5 cut(s) 11, 192, 268, 285, 451
DdeI CTNAG 3 cut(s) 234, 261, 488
Eam1104I CTCTTC 4 cut(s) 46, 82, 191, 317
EarI CTCTTC 4 cut(s) 46, 82, 191, 317
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 397
Eco32I GATATC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 172
Eco81I CCTNAGG 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 200, 538
EcoRV GATATC 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 2 cut(s) 524, 550
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 520, 546
FauI CCCGC 5 cut(s) 64, 95, 140, 157, 518
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 2 cut(s) 18, 420
FokI GGATG 2 cut(s) 51, 105
Fsp4HI GCNGC 2 cut(s) 18, 420
FspBI CTAG 3 cut(s) 336, 434, 652
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 18, 420
HhaI GCGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 524, 550
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 4 cut(s) 167, 212, 243, 588
Hpy166II GTNNAC 2 cut(s) 255, 458
Hpy188I TCNGA 6 cut(s) 166, 217, 262, 276, 316, 587
Hpy188III TCNNGA 2 cut(s) 233, 359
Hpy8I GTNNAC 2 cut(s) 255, 458
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 3 cut(s) 46, 58, 438
HpyCH4III ACNGT 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 132, 141
HpyF3I CTNAG 3 cut(s) 234, 261, 488
Hsp92II CATG 2 cut(s) 524, 550
HspAI GCGC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 7 cut(s) 187, 214, 246, 371, 525, 538, 552
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 2 cut(s) 73, 474
MaeI CTAG 3 cut(s) 336, 434, 652
MaeIII GTNAC 1 cut(s) 244
MboII GAAGA 7 cut(s) 33, 36, 69, 178, 303, 334, 515
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 4 cut(s) 103, 111, 219, 638
MlyI GAGTC 2 cut(s) 206, 252
MmeI TCCRAC 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 592
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 1 cut(s) 482
MspA1I CMGCKG 2 cut(s) 17, 352
MspR9I CCNGG 2 cut(s) 202, 540
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 2 cut(s) 202, 540
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 17, 132, 141
NlaIII CATG 2 cut(s) 524, 550
NlaIV GGNNCC 3 cut(s) 231, 286, 544
NmuCI GTSAC 1 cut(s) 244
PctI GAATGC 1 cut(s) 581
PdmI GAANNNNTTC 1 cut(s) 592
PfeI GAWTC 2 cut(s) 167, 588
PflFI GACNNNGTC 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 552
PkrI GCNGC 2 cut(s) 19, 421
PleI GAGTC 2 cut(s) 206, 251
PpsI GAGTC 2 cut(s) 206, 251
Psp6I CCWGG 2 cut(s) 200, 538
PspGI CCWGG 2 cut(s) 200, 538
PspN4I GGNNCC 3 cut(s) 231, 286, 544
PspPI GGNCC 1 cut(s) 204
PstNI CAGNNNCTG 1 cut(s) 391
PsyI GACNNNGTC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 2 cut(s) 18, 420
Sau96I GGNCC 1 cut(s) 204
SchI GAGTC 2 cut(s) 206, 252
ScrFI CCNGG 2 cut(s) 202, 540
SduI GDGCHC 1 cut(s) 406
SetI ASST 7 cut(s) 13, 186, 194, 329, 534, 573, 626
SfaNI GCATC 2 cut(s) 73, 474
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 482
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 4 cut(s) 103, 111, 219, 638
SspI AATATT 1 cut(s) 565
SspMI CTAG 3 cut(s) 336, 434, 652
StyD4I CCNGG 2 cut(s) 200, 538
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 511
TasI AATT 4 cut(s) 103, 111, 219, 638
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 2 cut(s) 167, 588
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 585
TspRI CASTG 1 cut(s) 514
Tth111I GACNNNGTC 1 cut(s) 242
Van91I CCANNNNNTGG 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 592
XspI CTAG 3 cut(s) 336, 434, 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.