Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008404

Physical Location & Seq

Genomic Coordinates Reverse (-)

13223312 .. 13226798

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGACAAACACGACTATATCAAGCGGGATACAATTACGAAAAAGGATTTCAACTAATAAAACGTCCGGTACTCCCACGTGGCTATCCTTACATGTGGAGTCAAATTCGCTTCCCTTCCCTTTCCGTTTCCTTCTTTTCTTCTCCGTCTCTCCTCTCTTCTCTGCAGTTCCTCTCTCTCCAATGGCCGAAACCTCTGCTGCTCTCCGCTTCTCACCCTTCTCTTCCCTCTCCTCCTTCACTCGCGCCAAGGACTCCTCTTTCTCTTCCTTCTCCGCTGCTTTCCCTCCAAAATCTCCAAATTCCCACCCTTGCCCCTCCCGCCTTCTCCGGTTTCCCGCCAAATCGTCCTCCGATTCGTCCAATTCCTTACCCGAGATCGATCTCTTCGGCTTCTTTCCTTGGTCCAATGACTCCGAAATTGAATGGGTTCCTGAGGAGAGAGTCACATTGTTCACTTGTGATGGGCTAATTCAGATCGGAGGCTCCATGGTCCCTCGACGTATCACTTCTTCGAATAAGAAGCAAGGGAGGTCGAAGACTACTCAAAGATTTCAGAGATTTCAAGAGAGTGATTACATGGACACAGAGCAGAGTTTGTGCCTGGGTGCACTCTTTGATATTGCAGCTACAAATGGCCTTGACATGGGCAGGAGACTCTGTATCTTTGGCTTTTGCCGTTCCATAGAGATGCTTAGCGATGTCGTGGAAGACACTGTGTTGGAACATGGCGGAGAGGTTGTTGCTGCAGAGAAGGCGATGAAAGGTGGTTTGCATGAAAAGCTAAGAATGACGGTTGCAGTGCCGTTACTTTGGGGGGTTCCTCCTGCCGCCGAAACACTTCACCTTGCCGTAAAGAGTGGTGGAGGAATTGTAGACAAAGTTTATTGGCAATGGGATTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.24

Weight (kDa)

7.67

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36895 AT2G36895 AT2G36895
fragaria_vesca	FvH4_6g16470 FvH4_6g16470
malus_domestica	MD04G1092500.v1.1 MD12G1110600.v1.1
prunus_persica	Prupe.7G128900_v2.0.a1 Prupe.7G128900_v2.0.a1
pyrus_communis	pycom04g08700 pycom12g11130
rosa_chinensis	RchiOBHm_Chr3g0470361
rosa_laevigata	RLG00000024274
rosa_multiflora	Rmu_co8148194.1_g000001 Rmu_sc0002383.1_g000023 Rmu_sc0006020.1_g000010
rosa_roxburghii	Rroxscaffold_6G00410880
rosa_rugosa	Rorug03G0108000
rosa_samantha	Rh3AG158300 Rh3BG182800 Rh3CG173400 Rh3DG192000
rosa_wichuraiana	Rw3G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	1 cut(s)	243
AciI	CCGC	7 cut(s)	24, 205, 273, 319, 336, 729, 828
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	103, 298
AcvI	CACGTG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	643
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	51, 422, 563
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	2 cut(s)	626, 781
AluI	AGCT	2 cut(s)	626, 781
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	2 cut(s)	151, 646
Alw44I	GTGCAC	1 cut(s)	606
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	183, 634
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	4 cut(s)	197, 275, 623, 743
ApoI	RAATTY	2 cut(s)	103, 298
Asp700I	GAANNNNTTC	2 cut(s)	426, 837
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	2 cut(s)	402, 490
AsuHPI	GGTGA	2 cut(s)	204, 833
AsuII	TTCGAA	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	402, 490
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	493, 525
BbrPI	CACGTG	1 cut(s)	78
BbsI	GAAGAC	2 cut(s)	542, 714
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	4 cut(s)	184, 262, 635, 730
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	3 cut(s)	660, 787, 833
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	602
BciVI	GTATCC	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	151, 646
BfmI	CTRYAG	2 cut(s)	162, 744
BfuI	GTATCC	1 cut(s)	21
BisI	GCNGC	5 cut(s)	198, 276, 624, 744, 828
BlpI	GCTNAGC	1 cut(s)	692
BlsI	GCNGC	5 cut(s)	199, 277, 625, 745, 829
Bme1390I	CCNGG	1 cut(s)	602
Bme18I	GGWCC	2 cut(s)	402, 490
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	402, 490
BmiI	GGNNCC	4 cut(s)	429, 484, 492, 819
BmrFI	CCNGG	1 cut(s)	602
BmsI	GCATC	1 cut(s)	678
BpiI	GAAGAC	2 cut(s)	542, 714
Bpu1102I	GCTNAGC	1 cut(s)	692
Bpu14I	TTCGAA	1 cut(s)	512
Bsa29I	ATCGAT	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	78
BsaJI	CCNNGG	4 cut(s)	246, 398, 486, 601
BsaWI	WCCGGW	2 cut(s)	65, 327
BsaXI	ACNNNNNCTCC	6 cut(s)	643, 673, 723, 753, 855, 885
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse21I	CCTNAGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	896
BseBI	CCWGG	1 cut(s)	602
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	4 cut(s)	246, 398, 486, 601
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMI	GCAATG	1 cut(s)	896
BseMII	CTCAG	1 cut(s)	423
BseRI	GAGGAG	4 cut(s)	141, 220, 244, 449
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	4 cut(s)	184, 262, 635, 730
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	185, 636
BshVI	ATCGAT	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	66, 328
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	2 cut(s)	151, 646
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	185, 636
BsoBI	CYCGRG	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	3 cut(s)	375, 379, 474
Bsp1720I	GCTNAGC	1 cut(s)	692
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	7 cut(s)	24, 205, 273, 319, 336, 729, 828
BspANI	GGCC	2 cut(s)	185, 636
BspCNI	CTCAG	1 cut(s)	424
BspDI	ATCGAT	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	4 cut(s)	429, 484, 492, 819
BspMAI	CTGCAG	2 cut(s)	166, 748
BspT104I	TTCGAA	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	896
BssECI	CCNNGG	4 cut(s)	246, 398, 486, 601
BssMI	GATC	3 cut(s)	375, 379, 474
BssT1I	CCWWGG	3 cut(s)	246, 398, 486
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	715, 793
Bst6I	CTCTTC	4 cut(s)	161, 226, 268, 389
BstBAI	YACGTR	1 cut(s)	78
BstBI	TTCGAA	1 cut(s)	512
BstDEI	CTNAG	3 cut(s)	432, 692, 782
BstDSI	CCRYGG	1 cut(s)	486
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	3 cut(s)	378, 382, 477
BstMAI	GTCTC	2 cut(s)	151, 646
BstMBI	GATC	3 cut(s)	375, 379, 474
BstMWI	GCNNNNNNNGC	3 cut(s)	318, 752, 778
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	600
BstSFI	CTRYAG	2 cut(s)	162, 744
BstSLI	GKGCMC	1 cut(s)	610
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	4 cut(s)	184, 262, 635, 730
BstV2I	GAAGAC	2 cut(s)	542, 714
Bsu15I	ATCGAT	1 cut(s)	378
Bsu36I	CCTNAGG	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	185, 636
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	2 cut(s)	711, 770
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	2 cut(s)	711, 804
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	402, 490
ClaI	ATCGAT	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	6 cut(s)	92, 487, 577, 643, 725, 773
CviJI	RGCY	9 cut(s)	82, 185, 390, 466, 483, 626, 636, 669, 781
CviKI_1	RGCY	9 cut(s)	82, 185, 390, 466, 483, 626, 636, 669, 781
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	3 cut(s)	432, 692, 782
DpnI	GATC	3 cut(s)	377, 381, 476
DpnII	GATC	3 cut(s)	375, 379, 474
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	4 cut(s)	161, 226, 268, 389
EarI	CTCTTC	4 cut(s)	161, 226, 268, 389
EciI	GGCGGA	1 cut(s)	744
Eco130I	CCWWGG	3 cut(s)	246, 398, 486
Eco47I	GGWCC	2 cut(s)	402, 490
Eco72I	CACGTG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	600
EcoT14I	CCWWGG	3 cut(s)	246, 398, 486
ErhI	CCWWGG	3 cut(s)	246, 398, 486
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	6 cut(s)	95, 490, 580, 646, 728, 776
FaiI	YATR	8 cut(s)	17, 93, 488, 578, 644, 683, 726, 774
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	6 cut(s)	91, 486, 576, 642, 724, 772
FauI	CCCGC	3 cut(s)	17, 326, 343
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	5 cut(s)	198, 276, 624, 744, 828
Fsp4HI	GCNGC	5 cut(s)	198, 276, 624, 744, 828
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	5 cut(s)	198, 276, 624, 744, 828
HaeIII	GGCC	2 cut(s)	185, 636
HapII	CCGG	2 cut(s)	66, 328
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	6 cut(s)	95, 490, 580, 646, 728, 776
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	6 cut(s)	98, 251, 353, 410, 441, 654
HpaII	CCGG	2 cut(s)	66, 328
HphI	GGTGA	2 cut(s)	204, 833
Hpy166II	GTNNAC	3 cut(s)	453, 608, 874
Hpy188I	TCNGA	5 cut(s)	352, 415, 474, 479, 555
Hpy188III	TCNNGA	2 cut(s)	431, 563
Hpy8I	GTNNAC	3 cut(s)	453, 608, 874
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	7 cut(s)	124, 140, 226, 244, 277, 332, 745
HpyCH4III	ACNGT	2 cut(s)	715, 793
HpyCH4IV	ACGT	3 cut(s)	62, 77, 499
HpyCH4V	TGCA	6 cut(s)	164, 608, 623, 746, 772, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	318, 752, 778
HpyF3I	CTNAG	3 cut(s)	432, 692, 782
HpySE526I	ACGT	3 cut(s)	62, 77, 499
Hsp92II	CATG	6 cut(s)	95, 490, 580, 646, 728, 776
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	375, 379, 474
LmnI	GCTCC	1 cut(s)	488
LpnPI	CCDG	7 cut(s)	79, 341, 444, 587, 614, 634, 837
Lsp1109I	GCAGC	4 cut(s)	184, 262, 635, 730
LweI	GCATC	1 cut(s)	678
MaeII	ACGT	3 cut(s)	62, 77, 499
MaeIII	GTNAC	2 cut(s)	442, 804
MalI	GATC	3 cut(s)	377, 381, 476
MboI	GATC	3 cut(s)	375, 379, 474
MboII	GAAGA	8 cut(s)	130, 148, 213, 255, 376, 501, 547, 719
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	7 cut(s)	32, 103, 298, 361, 417, 468, 867
MlyI	GAGTC	5 cut(s)	107, 245, 404, 450, 648
MmeI	TCCRAC	1 cut(s)	699
MroXI	GAANNNNTTC	2 cut(s)	426, 837
MslI	CAYNNNNRTG	1 cut(s)	686
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	66, 328
MspR9I	CCNGG	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	602
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	318, 752, 778
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	3 cut(s)	375, 379, 474
NlaIII	CATG	6 cut(s)	95, 490, 580, 646, 728, 776
NlaIV	GGNNCC	4 cut(s)	429, 484, 492, 819
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	512
PciI	ACATGT	1 cut(s)	91
PdmI	GAANNNNTTC	2 cut(s)	426, 837
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	199, 277, 625, 745, 829
PleI	GAGTC	5 cut(s)	106, 245, 404, 449, 648
PmaCI	CACGTG	1 cut(s)	78
PmlI	CACGTG	1 cut(s)	78
PpsI	GAGTC	5 cut(s)	106, 245, 404, 449, 648
Ppu21I	YACGTR	1 cut(s)	78
PscI	ACATGT	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	600
PspCI	CACGTG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	4 cut(s)	429, 484, 492, 819
PspPI	GGNCC	2 cut(s)	402, 490
PstI	CTGCAG	2 cut(s)	166, 748
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	686
SatI	GCNGC	5 cut(s)	198, 276, 624, 744, 828
Sau3AI	GATC	3 cut(s)	375, 379, 474
Sau96I	GGNCC	2 cut(s)	402, 490
SchI	GAGTC	5 cut(s)	107, 245, 404, 450, 648
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	678
SfcI	CTRYAG	2 cut(s)	162, 744
SfuI	TTCGAA	1 cut(s)	512
SinI	GGWCC	2 cut(s)	402, 490
SmiMI	CAYNNNNRTG	1 cut(s)	686
Sse9I	AATT	7 cut(s)	32, 103, 298, 361, 417, 468, 867
SsiI	CCGC	7 cut(s)	24, 205, 273, 319, 336, 729, 828
StyD4I	CCNGG	1 cut(s)	600
StyI	CCWWGG	3 cut(s)	246, 398, 486
TaaI	ACNGT	2 cut(s)	715, 793
TaiI	ACGT	3 cut(s)	65, 80, 502
TaqI	TCGA	4 cut(s)	378, 496, 512, 533
TasI	AATT	7 cut(s)	32, 103, 298, 361, 417, 468, 867
TauI	GCSGC	1 cut(s)	830
TfiI	GAWTC	1 cut(s)	353
TscAI	CASTG	2 cut(s)	718, 804
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	4 cut(s)	197, 275, 623, 743
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	773, 789
TspGWI	ACGGA	2 cut(s)	113, 133
TspRI	CASTG	2 cut(s)	718, 804
VneI	GTGCAC	1 cut(s)	606
VpaK11BI	GGWCC	2 cut(s)	402, 490
XapI	RAATTY	2 cut(s)	103, 298
XceI	RCATGY	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	873
XmnI	GAANNNNTTC	2 cut(s)	426, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.