Rw3G015030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0008404
Physical Location & Seq
Forward (+)
15393819 .. 15396776
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G015030.1

Sequence Viewer

Length: 690 bp
ATGGCGGAAGCTTCCGCTGCTCTCTGCTTCTCCCCCTTCTCTTCTTCCTTCTCTCCCGCCAAGCATCCCTCTCTCTCTTCTTTCTCCCGCGCTTTTTCTCCCAATTTCCCAATTTCCCATCCTTGCCCCTCCCGCCTCCTCCGCTTTCCCGCCAAATCCTCCTCCGACGACCTCTTCAGCTTCTTTCCCTGGTCCGATGACTCCGAAATTCAATGGGTTCCTGAGGACAGAGTCACATTGTTCACTTCTGAGGGGCTTGTTCAGATTGGAGGCTCCATAGTCCCTCGCCGTGTCGCTTCTTCGGATAAGAAGAGGTCAAAGACTAGTCAAAGATATCAGCGGTTTCAAGAGAGTGATTATATGGATACAGAGCAGGGTCTGTGTCTGGGTGCTCTCTTTGATATTGCAGCAACAAATGGACTTGATATGGGCAGGAGGCTTTGTATACTTGGGTTTTGCCGTTCCGTTGAGATGCTAAGCGATGTTGTGGAAGACACTGTGTTGGAACATGGCGGGGAGGTTGTTGAGGCAGAGAAGGCGACAAAAGGTGGTTTGCATGAAAAGCTAAGAATGACGGTTGCGGTACCATTACTTTGGGGGGTTCCTCCTGCTTCTGAAACCCTTCACCTCGCTGTTAAGAGTGGCGGAGGAATTGTAGATAAGGTTTATTGGCAGTGGGATTTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.26

Weight (kDa)

5.56

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7811 PF25103 107 - 229 7.6e-67 Domain of unknown function (DUF7811)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 583
AccI GTMKAC 1 cut(s) 445
AccII CGCG 1 cut(s) 90
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 160
AfaI GTAC 1 cut(s) 585
AgsI TTSAA 2 cut(s) 212, 347
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 3 cut(s) 11, 180, 565
AluI AGCT 3 cut(s) 11, 180, 565
Alw21I GWGCWC 1 cut(s) 394
AlwNI CAGNNNCTG 1 cut(s) 379
ApeKI GCWGC 2 cut(s) 17, 407
ApoI RAATTY 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 621
Asp718I GGTACC 1 cut(s) 583
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 617
AvaII GGWCC 1 cut(s) 192
AxyI CCTNAGG 1 cut(s) 222
BanI GGYRCC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 2 cut(s) 4, 419
BccI CCATC 1 cut(s) 126
BceAI ACGGC 2 cut(s) 273, 444
BciT130I CCWGG 1 cut(s) 190
BciVI GTATCC 1 cut(s) 358
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 1 cut(s) 324
BfuI GTATCC 1 cut(s) 358
BisI GCNGC 2 cut(s) 18, 408
BlpI GCTNAGC 1 cut(s) 476
BlsI GCNGC 2 cut(s) 19, 409
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 4 cut(s) 219, 274, 585, 603
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 73, 462
BpiI GAAGAC 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 188
BsaXI ACNNNNNCTCC 4 cut(s) 427, 457, 639, 669
Bse21I CCTNAGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 64, 118
BseMII CTCAG 2 cut(s) 213, 240
BseRI GAGGAG 2 cut(s) 128, 151
BseXI GCAGC 2 cut(s) 4, 419
Bsh1236I CGCG 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 583
BsiHKAI GWGCWC 1 cut(s) 394
BslFI GGGAC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 394
Bsp1720I GCTNAGC 1 cut(s) 476
BspCNI CTCAG 2 cut(s) 214, 241
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 4 cut(s) 219, 274, 585, 603
BspT107I GGYRCC 1 cut(s) 583
BssECI CCNNGG 1 cut(s) 188
BssNAI GTATAC 1 cut(s) 446
Bst1107I GTATAC 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 499, 577
Bst6I CTCTTC 4 cut(s) 46, 82, 179, 305
BstDEI CTNAG 4 cut(s) 222, 249, 476, 566
BstF5I GGATG 2 cut(s) 64, 118
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 92
BstMWI GCNNNNNNNGC 5 cut(s) 17, 132, 141, 536, 562
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 4, 419
BstV2I GAAGAC 1 cut(s) 498
BstXI CCANNNNNNTGG 1 cut(s) 594
BstZ17I GTATAC 1 cut(s) 446
Bsu36I CCTNAGG 1 cut(s) 222
BsuI GTATCC 1 cut(s) 358
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 2 cut(s) 64, 118
BtsI GCAGTG 1 cut(s) 680
BtsIMutI CAGTG 2 cut(s) 495, 680
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 584
CviAII CATG 2 cut(s) 509, 557
CviJI RGCY 6 cut(s) 11, 180, 256, 273, 439, 565
CviKI_1 RGCY 6 cut(s) 11, 180, 256, 273, 439, 565
CviQI GTAC 1 cut(s) 584
DdeI CTNAG 4 cut(s) 222, 249, 476, 566
Eam1104I CTCTTC 4 cut(s) 46, 82, 179, 305
EarI CTCTTC 4 cut(s) 46, 82, 179, 305
EciI GGCGGA 2 cut(s) 20, 660
Eco32I GATATC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 188
EcoRV GATATC 1 cut(s) 335
FaeI CATG 2 cut(s) 512, 560
FaiI YATR 7 cut(s) 278, 360, 362, 428, 446, 510, 558
FaqI GGGAC 1 cut(s) 266
FatI CATG 2 cut(s) 508, 556
FauI CCCGC 5 cut(s) 64, 95, 140, 157, 506
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 2 cut(s) 18, 408
FokI GGATG 2 cut(s) 51, 105
Fsp4HI GCNGC 2 cut(s) 18, 408
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 18, 408
HhaI GCGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 512, 560
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 2 cut(s) 200, 231
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 2 cut(s) 243, 446
Hpy188I TCNGA 7 cut(s) 166, 196, 205, 250, 264, 304, 616
Hpy188III TCNNGA 2 cut(s) 221, 347
Hpy8I GTNNAC 2 cut(s) 243, 446
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 4 cut(s) 46, 58, 529, 632
HpyCH4III ACNGT 2 cut(s) 499, 577
HpyCH4V TGCA 2 cut(s) 407, 556
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 132, 141, 536, 562
HpyF3I CTNAG 4 cut(s) 222, 249, 476, 566
Hsp92II CATG 2 cut(s) 512, 560
HspAI GCGC 1 cut(s) 90
KpnI GGTACC 1 cut(s) 587
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 7 cut(s) 175, 202, 234, 359, 371, 418, 621
Lsp1109I GCAGC 2 cut(s) 4, 419
LweI GCATC 2 cut(s) 73, 462
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 7 cut(s) 33, 36, 69, 166, 291, 322, 503
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 4 cut(s) 103, 111, 207, 651
MlyI GAGTC 2 cut(s) 194, 240
MmeI TCCRAC 2 cut(s) 189, 483
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 1 cut(s) 636
MspA1I CMGCKG 2 cut(s) 17, 340
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 5 cut(s) 17, 132, 141, 536, 562
NlaIII CATG 2 cut(s) 512, 560
NlaIV GGNNCC 4 cut(s) 219, 274, 585, 603
NmuCI GTSAC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 621
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 19, 409
PleI GAGTC 2 cut(s) 194, 239
PpsI GAGTC 2 cut(s) 194, 239
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 4 cut(s) 219, 274, 585, 603
PspPI GGNCC 1 cut(s) 192
PstNI CAGNNNCTG 1 cut(s) 379
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 1 cut(s) 585
RsaNI GTAC 1 cut(s) 584
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 2 cut(s) 18, 408
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 2 cut(s) 194, 240
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 1 cut(s) 394
SetI ASST 9 cut(s) 13, 174, 182, 317, 522, 550, 567, 630, 666
SfaNI GCATC 2 cut(s) 73, 462
SinI GGWCC 1 cut(s) 192
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 4 cut(s) 103, 111, 207, 651
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 499, 577
TasI AATT 4 cut(s) 103, 111, 207, 651
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 2 cut(s) 502, 680
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 17, 407
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 573
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 2 cut(s) 502, 680
Tth111I GACNNNGTC 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 192
XapI RAATTY 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.