Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008404

Physical Location & Seq

Genomic Coordinates Reverse (-)

17498525 .. 17498995

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1110600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGAAAGGCGGTTTGCATGAAAAGTTAAGAATGACGGTTGCAGTGCCGTTACTTTGGGGGGTTCCTCCTGCCGCCGAAACACTTCACCTTGCCGTAAAGTGTGGTGGAGGAATTGTAGACAAAGTTTATTGGCAATGGGATTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

50

Amino Acids

5.43

Weight (kDa)

7.94

Isoelectric Point (pI)

19.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7811	PF25103	2 - 49	5e-24	Domain of unknown function (DUF7811)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36895 AT2G36895 AT2G36895
fragaria_vesca	FvH4_6g16470 FvH4_6g16470
malus_domestica	MD04G1092500.v1.1 MD12G1110600.v1.1
prunus_persica	Prupe.7G128900_v2.0.a1 Prupe.7G128900_v2.0.a1
pyrus_communis	pycom04g08700 pycom12g11130
rosa_chinensis	RchiOBHm_Chr3g0470361
rosa_laevigata	RLG00000024274
rosa_multiflora	Rmu_co8148194.1_g000001 Rmu_sc0002383.1_g000023 Rmu_sc0006020.1_g000010
rosa_roxburghii	Rroxscaffold_6G00410880
rosa_rugosa	Rorug03G0108000
rosa_samantha	Rh3AG158300 Rh3BG182800 Rh3CG173400 Rh3DG192000
rosa_wichuraiana	Rw3G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	2 cut(s)	9, 72
Asp700I	GAANNNNTTC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	77
BceAI	ACGGC	2 cut(s)	31, 77
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse3DI	GCAATG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	140
BspACI	CCGC	2 cut(s)	9, 72
BspLI	GGNNCC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
CviAII	CATG	1 cut(s)	17
FaeI	CATG	1 cut(s)	20
FaiI	YATR	1 cut(s)	18
FatI	CATG	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	16, 41
Hsp92II	CATG	1 cut(s)	20
LpnPI	CCDG	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	48
MluCI	AATT	1 cut(s)	111
MnlI	CCTC	2 cut(s)	75, 101
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	26
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	1 cut(s)	72
SetI	ASST	1 cut(s)	90
SgeI	CNNG	3 cut(s)	29, 80, 101
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	2 cut(s)	9, 72
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	1 cut(s)	111
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	17, 33
TspRI	CASTG	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.