Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008404

Physical Location & Seq

Genomic Coordinates Reverse (-)

14909260 .. 14912671

Gene Structure 3412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G128900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCATTTCCTTCTTTTCTTCTCCGTTTCTCTCTCTGCAATTTCCTCTTTTCAATGGCTGAAACCTCGGCTGCTCTTTGCTTCTCACCTTTCTCTTCCTTTCCCTCCTTCTCTCGCGCCAAGGACTCATCTTTCTCTTCTCTCTCCGCCGCTTTCCCTCCGAAATCCCCAAAGTCCCATCCTTGCCCATCTCGCCTTCTCCGGTTTCGCGCCAAATCCTCCTCCGATTCGTCGAATTCCTTACCCGACGATATCTTCGGCTTCTTTCCTTGGTCCAATGACTCCGAAATTGAATGGGTTGCTGAGGAGAGAGTCACATTGTTCACTACTGATGGGCTCGTTCAGATTGGAGGCTCCATGGTCCCTAGACGTGTCACTTCTTCAAATAAGAAGCAAGGGAGGTCAAAGGCTAATCAAAGATTTCAGCGATTTCAGGAGAGTGATTACATGGATACAGAGCAGGGTTTGTGTCTAGGTGCTCTCTTTGATATTGCAGCAACAAATGGTCTTGATACGGGCAGGAAACTATGTATCTTTGGGTTTTGCCGTTCCATTGAGATGCTAAGCGATGTTGTGGAAGACACTGTGCTGGAACATGGTGGTGAGGTTGTTGCTGCAGAGAAAGCGATGAAAGGTGGGTTGCATGAAAAGCTAAGAATGACGGTTGCAGTGCCATTACTCTGGGGGGTTCCTCCTGCTTCTGAAACACTTCACCTTGCTGTAAAGAGTGGTGGAGGAATTGTAGAGAAAGTTTATTGGCAATGGGATTTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

28.5

Weight (kDa)

6.44

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36895 AT2G36895 AT2G36895
fragaria_vesca	FvH4_6g16470 FvH4_6g16470
malus_domestica	MD04G1092500.v1.1 MD12G1110600.v1.1
prunus_persica	Prupe.7G128900_v2.0.a1 Prupe.7G128900_v2.0.a1
pyrus_communis	pycom04g08700 pycom12g11130
rosa_chinensis	RchiOBHm_Chr3g0470361
rosa_laevigata	RLG00000024274
rosa_multiflora	Rmu_co8148194.1_g000001 Rmu_sc0002383.1_g000023 Rmu_sc0006020.1_g000010
rosa_roxburghii	Rroxscaffold_6G00410880
rosa_rugosa	Rorug03G0108000
rosa_samantha	Rh3AG158300 Rh3BG182800 Rh3CG173400 Rh3DG192000
rosa_wichuraiana	Rw3G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	117, 210
AciI	CCGC	2 cut(s)	147, 150
AcsI	RAATTY	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	54, 293, 384
AjiI	CACGTC	1 cut(s)	371
AluBI	AGCT	1 cut(s)	652
AluI	AGCT	1 cut(s)	652
Alw21I	GWGCWC	1 cut(s)	481
ApeKI	GCWGC	3 cut(s)	71, 494, 614
ApoI	RAATTY	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	708
AspLEI	GCGC	2 cut(s)	119, 212
AspS9I	GGNCC	2 cut(s)	273, 361
AsuHPI	GGTGA	3 cut(s)	78, 614, 704
AvaII	GGWCC	2 cut(s)	273, 361
BanII	GRGCYC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	481
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	58, 506, 601
BccI	CCATC	3 cut(s)	186, 196, 326
BceAI	ACGGC	1 cut(s)	531
BciVI	GTATCC	1 cut(s)	445
BfaI	CTAG	2 cut(s)	366, 473
BfmI	CTRYAG	1 cut(s)	615
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	4 cut(s)	72, 150, 495, 615
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	4 cut(s)	73, 151, 496, 616
Bme18I	GGWCC	2 cut(s)	273, 361
BmgBI	CACGTC	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	273, 361
BmiI	GGNNCC	3 cut(s)	355, 363, 690
BmsI	GCATC	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	585
Bpu10I	CCTNAGC	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	563
BsaJI	CCNNGG	4 cut(s)	66, 120, 269, 357
BsaWI	WCCGGW	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bse3DI	GCAATG	1 cut(s)	767
BseDI	CCNNGG	4 cut(s)	66, 120, 269, 357
BseGI	GGATG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	767
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	2 cut(s)	211, 320
BseXI	GCAGC	3 cut(s)	58, 506, 601
Bsh1236I	CGCG	2 cut(s)	117, 210
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	2 cut(s)	160, 347
BsmFI	GGGAC	2 cut(s)	160, 347
Bsp1286I	GDGCHC	2 cut(s)	339, 481
Bsp1720I	GCTNAGC	1 cut(s)	563
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	2 cut(s)	147, 150
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	2 cut(s)	117, 210
BspLI	GGNNCC	3 cut(s)	355, 363, 690
BspMAI	CTGCAG	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	767
BssECI	CCNNGG	4 cut(s)	66, 120, 269, 357
BssT1I	CCWWGG	3 cut(s)	120, 269, 357
Bst4CI	ACNGT	2 cut(s)	586, 664
Bst6I	CTCTTC	2 cut(s)	100, 142
BstDEI	CTNAG	3 cut(s)	303, 563, 653
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	2 cut(s)	117, 210
BstHHI	GCGC	2 cut(s)	119, 212
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 623, 649
BstSFI	CTRYAG	1 cut(s)	615
BstUI	CGCG	2 cut(s)	117, 210
BstV1I	GCAGC	3 cut(s)	58, 506, 601
BstV2I	GAAGAC	1 cut(s)	585
BstXI	CCANNNNNNTGG	1 cut(s)	681
BsuI	GTATCC	1 cut(s)	445
BtgI	CCRYGG	1 cut(s)	357
BtgZI	GCGATG	2 cut(s)	582, 641
BtrI	CACGTC	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	2 cut(s)	582, 675
CfoI	GCGC	2 cut(s)	119, 212
Cfr13I	GGNCC	2 cut(s)	273, 361
CviAII	CATG	4 cut(s)	358, 448, 596, 644
CviJI	RGCY	7 cut(s)	59, 71, 261, 337, 354, 410, 652
CviKI_1	RGCY	7 cut(s)	59, 71, 261, 337, 354, 410, 652
DdeI	CTNAG	3 cut(s)	303, 563, 653
Eam1104I	CTCTTC	2 cut(s)	100, 142
EarI	CTCTTC	2 cut(s)	100, 142
EciI	GGCGGA	1 cut(s)	136
Eco130I	CCWWGG	3 cut(s)	120, 269, 357
Eco24I	GRGCYC	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	273, 361
EcoRI	GAATTC	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	3 cut(s)	120, 269, 357
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	3 cut(s)	120, 269, 357
FaeI	CATG	4 cut(s)	361, 451, 599, 647
FaiI	YATR	5 cut(s)	359, 449, 529, 597, 645
FaqI	GGGAC	2 cut(s)	160, 347
FatI	CATG	4 cut(s)	357, 447, 595, 643
Fnu4HI	GCNGC	4 cut(s)	72, 150, 495, 615
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	4 cut(s)	72, 150, 495, 615
FspBI	CTAG	2 cut(s)	366, 473
GlaI	GCGC	2 cut(s)	118, 211
GluI	GCNGC	4 cut(s)	72, 150, 495, 615
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	2 cut(s)	119, 212
Hin1II	CATG	4 cut(s)	361, 451, 599, 647
Hin6I	GCGC	2 cut(s)	117, 210
HinP1I	GCGC	2 cut(s)	117, 210
HinfI	GANTC	4 cut(s)	125, 227, 281, 312
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	3 cut(s)	78, 614, 704
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	5 cut(s)	162, 226, 286, 345, 703
Hpy188III	TCNNGA	2 cut(s)	434, 509
Hpy8I	GTNNAC	1 cut(s)	324
Hpy99I	CGWCG	2 cut(s)	235, 251
HpyAV	CCTTC	3 cut(s)	21, 118, 206
HpyCH4III	ACNGT	2 cut(s)	586, 664
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	39, 494, 617, 643, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 623, 649
HpyF3I	CTNAG	3 cut(s)	303, 563, 653
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	4 cut(s)	361, 451, 599, 647
HspAI	GCGC	2 cut(s)	117, 210
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	7 cut(s)	215, 419, 446, 505, 575, 667, 708
Lsp1109I	GCAGC	3 cut(s)	58, 506, 601
LweI	GCATC	1 cut(s)	549
MaeI	CTAG	2 cut(s)	366, 473
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	313, 373
MboII	GAAGA	6 cut(s)	11, 87, 129, 247, 372, 590
MhlI	GDGCHC	2 cut(s)	339, 481
MluCI	AATT	4 cut(s)	40, 235, 288, 738
MlyI	GAGTC	3 cut(s)	119, 275, 321
MroXI	GAANNNNTTC	1 cut(s)	708
MslI	CAYNNNNRTG	2 cut(s)	557, 600
MspI	CCGG	1 cut(s)	202
MvnI	CGCG	2 cut(s)	117, 210
MwoI	GCNNNNNNNGC	3 cut(s)	192, 623, 649
NcoI	CCATGG	1 cut(s)	357
NlaIII	CATG	4 cut(s)	361, 451, 599, 647
NlaIV	GGNNCC	3 cut(s)	355, 363, 690
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	2 cut(s)	313, 373
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	73, 151, 496, 616
PleI	GAGTC	3 cut(s)	119, 275, 320
PpsI	GAGTC	3 cut(s)	119, 275, 320
PspN4I	GGNNCC	3 cut(s)	355, 363, 690
PspPI	GGNCC	2 cut(s)	273, 361
PstI	CTGCAG	1 cut(s)	619
RseI	CAYNNNNRTG	2 cut(s)	557, 600
SatI	GCNGC	4 cut(s)	72, 150, 495, 615
Sau96I	GGNCC	2 cut(s)	273, 361
SchI	GAGTC	3 cut(s)	119, 275, 321
SduI	GDGCHC	2 cut(s)	339, 481
SetI	ASST	9 cut(s)	68, 91, 373, 404, 478, 609, 637, 654, 717
SfaNI	GCATC	1 cut(s)	549
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	2 cut(s)	273, 361
SmiMI	CAYNNNNRTG	2 cut(s)	557, 600
Sse9I	AATT	4 cut(s)	40, 235, 288, 738
SsiI	CCGC	2 cut(s)	147, 150
SspMI	CTAG	2 cut(s)	366, 473
StyI	CCWWGG	3 cut(s)	120, 269, 357
TaaI	ACNGT	2 cut(s)	586, 664
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	233
TasI	AATT	4 cut(s)	40, 235, 288, 738
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	2 cut(s)	589, 675
TseFI	GTSAC	2 cut(s)	313, 373
TseI	GCWGC	3 cut(s)	71, 494, 614
Tsp45I	GTSAC	2 cut(s)	313, 373
TspDTI	ATGAA	2 cut(s)	644, 660
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	2 cut(s)	589, 675
VpaK11BI	GGWCC	2 cut(s)	273, 361
XapI	RAATTY	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	2 cut(s)	366, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.