FvH4_6g16470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008404
Physical Location & Seq
Forward (+)
10420795 .. 10423594
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16470.t1

Sequence Viewer

Length: 768 bp
ATGTGGCGTCAAACTCGCCTCCTTTCCTCTTCCTTGTTCTTTCCATTTCCCACAAGTCCCATTTCCTCTCTGCAAATTCCTCCAATGGCGGAAGCCTCCACCGCTCTCTGCTTCTCCTCCTTCTCTCGCCCCAACCACCCCTCTCTCTCCCGCTCTTTCCCCCGCAATTTCCCAGTTTCCCATCCTTGCCCCTCCCGCCTCCTCCGCTTTCCCGCCAAATCATCCTCCTCCGATTCCCTCCCCGACGACCTCTTCGGCTTCTTTCCCTGGTCCAACGACTCCGAAATTCAATGGGTTCCTGAGGACAGAGTCACATTGTTCACTTCTGAGGGGCTTGTTCAGATTGGAGGCTCCATAGTCCCCCGCCGTGTTGCGTCTTCGGATAAGAAGAGGTCAAAGACTAGTCAAAGATATCAGCGGTTTCAAGAGAGGGATTACATGGATACGGAGCAGGGTCTGTGTTTGGGTGCTCTCTTTGATATTGCAGCAACAAATGGACTTGATATGGGCAGGAGGCTTTGTATATTTGGGTTTTGCCGGTCCATTGAGATGCTAAGCGATGTTGTGGAAGACACTGTGTTGGAACATGGTGGGGAGGTTGTTGAGGCAGAGAAGGCGACAAAAGGTGGTTTGCATGAAAAGCTAAGAATGACGGTTGCAGTACCATTACTTTGGGGGGTTCCTCCTGCTTCTGAAACCCTTCACCTCGCTGTTAAGAGTGGTGGAGGAATTGTAGATAAGGTTTATTGGCAATGGGATTTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.49

Weight (kDa)

6.53

Isoelectric Point (pI)

56.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7811 PF25103 133 - 255 1.2e-66 Domain of unknown function (DUF7811)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 104, 153
AciI CCGC 9 cut(s) 89, 102, 151, 163, 196, 205, 213, 364, 418
AcsI RAATTY 2 cut(s) 75, 285
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 1 cut(s) 663
AgsI TTSAA 2 cut(s) 290, 425
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 1 cut(s) 643
AluI AGCT 1 cut(s) 643
Alw21I GWGCWC 1 cut(s) 472
AlwNI CAGNNNCTG 1 cut(s) 457
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 2 cut(s) 75, 285
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
Asp700I GAANNNNTTC 1 cut(s) 699
AspS9I GGNCC 2 cut(s) 270, 540
AsuHPI GGTGA 1 cut(s) 695
AvaII GGWCC 2 cut(s) 270, 540
AxyI CCTNAGG 1 cut(s) 300
BbsI GAAGAC 2 cut(s) 369, 576
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 1 cut(s) 497
BccI CCATC 1 cut(s) 189
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 1 cut(s) 268
BciVI GTATCC 1 cut(s) 436
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 1 cut(s) 402
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 1 cut(s) 486
BlpI GCTNAGC 1 cut(s) 554
BlsI GCNGC 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 268
Bme18I GGWCC 2 cut(s) 270, 540
BmgT120I GGNCC 2 cut(s) 270, 540
BmiI GGNNCC 3 cut(s) 297, 352, 681
BmrFI CCNGG 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 167
BpiI GAAGAC 2 cut(s) 369, 576
Bpu1102I GCTNAGC 1 cut(s) 554
BsaHI GRCGYC 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 266
BsaXI ACNNNNNCTCC 4 cut(s) 505, 535, 717, 747
Bse118I RCCGGY 1 cut(s) 537
Bse1I ACTGG 1 cut(s) 173
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 758
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 181, 221
BseMI GCAATG 1 cut(s) 758
BseMII CTCAG 2 cut(s) 291, 318
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 3 cut(s) 106, 191, 217
BseXI GCAGC 1 cut(s) 497
BsiHKAI GWGCWC 1 cut(s) 472
BsiSI CCGG 1 cut(s) 538
BslFI GGGAC 2 cut(s) 42, 344
BsmFI GGGAC 2 cut(s) 42, 344
Bsp1286I GDGCHC 1 cut(s) 472
Bsp1720I GCTNAGC 1 cut(s) 554
BspACI CCGC 9 cut(s) 89, 102, 151, 163, 196, 205, 213, 364, 418
BspCNI CTCAG 2 cut(s) 292, 319
BspLI GGNNCC 3 cut(s) 297, 352, 681
BsrBI CCGCTC 2 cut(s) 104, 153
BsrDI GCAATG 1 cut(s) 758
BsrFI RCCGGY 1 cut(s) 537
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 537
BssECI CCNNGG 1 cut(s) 266
BssNI GRCGYC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 577, 655
Bst6I CTCTTC 3 cut(s) 34, 257, 383
BstACI GRCGYC 1 cut(s) 7
BstDEI CTNAG 4 cut(s) 300, 327, 554, 644
BstF5I GGATG 2 cut(s) 181, 221
BstMWI GCNNNNNNNGC 5 cut(s) 101, 195, 204, 614, 640
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 497
BstV2I GAAGAC 2 cut(s) 369, 576
BstXI CCANNNNNNTGG 1 cut(s) 672
Bsu36I CCTNAGG 1 cut(s) 300
BsuI GTATCC 1 cut(s) 436
BtgZI GCGATG 1 cut(s) 573
BtsCI GGATG 2 cut(s) 181, 221
BtsIMutI CAGTG 1 cut(s) 573
CaiI CAGNNNCTG 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 537
Cfr13I GGNCC 2 cut(s) 270, 540
CseI GACGC 1 cut(s) 363
Csp6I GTAC 1 cut(s) 662
CviAII CATG 3 cut(s) 439, 587, 635
CviJI RGCY 6 cut(s) 95, 258, 334, 351, 517, 643
CviKI_1 RGCY 6 cut(s) 95, 258, 334, 351, 517, 643
CviQI GTAC 1 cut(s) 662
DdeI CTNAG 4 cut(s) 300, 327, 554, 644
Eam1104I CTCTTC 3 cut(s) 34, 257, 383
EarI CTCTTC 3 cut(s) 34, 257, 383
EciI GGCGGA 1 cut(s) 104
Eco32I GATATC 1 cut(s) 413
Eco47I GGWCC 2 cut(s) 270, 540
Eco81I CCTNAGG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 266
EcoRV GATATC 1 cut(s) 413
FaeI CATG 3 cut(s) 442, 590, 638
FaiI YATR 6 cut(s) 356, 440, 506, 524, 588, 636
FaqI GGGAC 2 cut(s) 42, 344
FatI CATG 3 cut(s) 438, 586, 634
FauI CCCGC 5 cut(s) 158, 170, 203, 220, 371
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 2 cut(s) 168, 208
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 1 cut(s) 402
GluI GCNGC 1 cut(s) 486
HapII CCGG 1 cut(s) 538
HgaI GACGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 3 cut(s) 442, 590, 638
HinfI GANTC 3 cut(s) 233, 278, 309
HpaII CCGG 1 cut(s) 538
HphI GGTGA 1 cut(s) 695
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 6 cut(s) 232, 283, 328, 342, 382, 694
Hpy188III TCNNGA 2 cut(s) 299, 425
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 130, 607, 710
HpyCH4III ACNGT 2 cut(s) 577, 655
HpyCH4V TGCA 4 cut(s) 73, 485, 634, 659
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 195, 204, 614, 640
HpyF3I CTNAG 4 cut(s) 300, 327, 554, 644
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 3 cut(s) 442, 590, 638
LmnI GCTCC 2 cut(s) 356, 448
LpnPI CCDG 8 cut(s) 186, 253, 280, 312, 437, 496, 551, 699
Lsp1109I GCAGC 1 cut(s) 497
LweI GCATC 1 cut(s) 540
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 310
MbiI CCGCTC 2 cut(s) 104, 153
MboII GAAGA 5 cut(s) 21, 244, 369, 400, 581
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 4 cut(s) 75, 166, 285, 729
MlyI GAGTC 2 cut(s) 272, 318
MmeI TCCRAC 2 cut(s) 297, 561
MroXI GAANNNNTTC 1 cut(s) 699
MseI TTAA 1 cut(s) 714
MslI CAYNNNNRTG 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 1 cut(s) 538
MspR9I CCNGG 1 cut(s) 268
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 5 cut(s) 101, 195, 204, 614, 640
NlaIII CATG 3 cut(s) 442, 590, 638
NlaIV GGNNCC 3 cut(s) 297, 352, 681
NmuCI GTSAC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 487
PleI GAGTC 2 cut(s) 272, 317
PpsI GAGTC 2 cut(s) 272, 317
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 3 cut(s) 297, 352, 681
PspPI GGNCC 2 cut(s) 270, 540
PstNI CAGNNNCTG 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 1 cut(s) 663
RsaNI GTAC 1 cut(s) 662
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 1 cut(s) 486
Sau96I GGNCC 2 cut(s) 270, 540
SchI GAGTC 2 cut(s) 272, 318
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 1 cut(s) 472
SetI ASST 7 cut(s) 252, 395, 600, 628, 645, 708, 744
SfaNI GCATC 1 cut(s) 540
SinI GGWCC 2 cut(s) 270, 540
SmiMI CAYNNNNRTG 1 cut(s) 548
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 4 cut(s) 75, 166, 285, 729
SsiI CCGC 9 cut(s) 89, 102, 151, 163, 196, 205, 213, 364, 418
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 266
TaaI ACNGT 2 cut(s) 577, 655
TasI AATT 4 cut(s) 75, 166, 285, 729
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 651
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 580
Tth111I GACNNNGTC 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 270, 540
XapI RAATTY 2 cut(s) 75, 285
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.