Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007710

Physical Location & Seq

Genomic Coordinates Reverse (-)

15490560 .. 15492822

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCGTCTGGTATCGTCGAAGGAGGCGGATCCTTATCGGATGTATATAGTAGTGCGAAAAGGATTCTACTCAAGGCTCGCGACGGAATCGAGAGGTTAGAGAGGTTCGAATCATCTTCTATGGATTCTCCCGATCTAGCCTCCTCCGTGAAACGAGATATTACTGAGGTCCGATCTCTCTGCTCTAACATGGATACTCTCTGGCGCTCAATTCCTGTTAAATCTCAGCGCGATCTCTGGAGAAGAAAGACTGAACAAGTTGGAGAAGAAGCTGAGTATTTGAATCTAAGTCTGGAGAAATACATGTCGAGGAATCAGAGGAAGATGTTGGAAGCTAAAGAGAGAGCGGATTTGCTAGGTAGAGCGAGTGGAGAAGGAGCTCACATTTTGCAGATATTTGATGAGGAAGCTCAAGCTATGAGCTCTGTGAAGAACTCAAAGAGAATGCTTGAAGAGTCGTTTTCTAGTGGTGTTGCTATCCTCTCCAAATATGCTGAACAAAGGGATCGTTTGAAGAGTGCACAGCGTAAAGCTTTGGATGTTCTGAACACAGTAGGGCTCTCCAATTCGGTACTGAGGCTCATTGAGAGGCGCAATCGTGTTGATACTTGGATCAAATATGCCGGTATGATCGCAACACTTGTCATATTATATCTGTTCATAAGATGGACACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002682 GO:0002791 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031347 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0048583 GO:0050708 GO:0050776 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0065007 GO:0070201 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080134 GO:0090087 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

225

Amino Acids

25.63

Weight (kDa)

9.54

Isoelectric Point (pI)

61.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	134 - 199	6.8e-20	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36900 AT2G36900 AT2G36900 AT5G50440 AT5G50440
fragaria_vesca	FvH4_3g25040
malus_domestica	MD02G1195300.v1.1
prunus_persica	Prupe.2G153200_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1
pyrus_communis	pycom02g15910
rosa_chinensis	RchiOBHm_Chr5g0045181
rosa_laevigata	RLG00000034341
rosa_multiflora	Rmu_sc0001773.1_g000012
rosa_roxburghii	Rroxscaffold_1G00035850
rosa_rugosa	Rorug05G0221300 Rorug05G0221400
rosa_samantha	Rh5AG302800 Rh5BG311300 Rh5CG337300 Rh5DG321500
rosa_wichuraiana	Rw5G028100 Rw5G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	347
AccII	CGCG	2 cut(s)	81, 231
AciI	CCGC	2 cut(s)	27, 347
AclWI	GGATC	4 cut(s)	24, 37, 513, 620
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	573
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	283, 452, 514
AluBI	AGCT	7 cut(s)	272, 335, 380, 410, 416, 423, 533
AluI	AGCT	7 cut(s)	272, 335, 380, 410, 416, 423, 533
Alw21I	GWGCWC	3 cut(s)	382, 425, 523
Alw44I	GTGCAC	1 cut(s)	519
AlwI	GGATC	4 cut(s)	24, 37, 513, 620
ApaLI	GTGCAC	1 cut(s)	519
AspLEI	GCGC	3 cut(s)	207, 231, 594
AspS9I	GGNCC	1 cut(s)	169
AsuII	TTCGAA	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	523
BamHI	GGATCC	1 cut(s)	29
BanII	GRGCYC	3 cut(s)	382, 425, 561
Bbv12I	GWGCWC	3 cut(s)	382, 425, 523
BccI	CCATC	1 cut(s)	660
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciVI	GTATCC	1 cut(s)	187
BfaI	CTAG	3 cut(s)	137, 356, 465
BfoI	RGCGCY	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	259, 314
Bpu14I	TTCGAA	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	56, 396
BsaBI	GATNNNNATC	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	5
Bse118I	RCCGGY	1 cut(s)	623
Bse8I	GATNNNNATC	1 cut(s)	34
BseGI	GGATG	2 cut(s)	46, 544
BseJI	GATNNNNATC	1 cut(s)	34
BseMII	CTCAG	4 cut(s)	156, 239, 264, 566
BseRI	GAGGAG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	523
Bsh1236I	CGCG	2 cut(s)	81, 231
BsiHKAI	GWGCWC	3 cut(s)	382, 425, 523
BsiSI	CCGG	1 cut(s)	624
BsmI	GAATGC	1 cut(s)	450
Bsp119I	TTCGAA	1 cut(s)	108
Bsp1286I	GDGCHC	4 cut(s)	382, 425, 523, 561
Bsp143I	GATC	7 cut(s)	29, 133, 173, 232, 505, 612, 630
Bsp68I	TCGCGA	1 cut(s)	81
BspACI	CCGC	2 cut(s)	27, 347
BspCNI	CTCAG	4 cut(s)	157, 238, 265, 567
BspFNI	CGCG	2 cut(s)	81, 231
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	4 cut(s)	24, 37, 513, 620
BspT104I	TTCGAA	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	623
BssAI	RCCGGY	1 cut(s)	623
BssMI	GATC	7 cut(s)	29, 133, 173, 232, 505, 612, 630
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	2 cut(s)	447, 509
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	5 cut(s)	165, 225, 273, 287, 575
BstF5I	GGATG	2 cut(s)	46, 544
BstFNI	CGCG	2 cut(s)	81, 231
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	3 cut(s)	207, 231, 594
BstKTI	GATC	7 cut(s)	32, 136, 176, 235, 508, 615, 633
BstMBI	GATC	7 cut(s)	29, 133, 173, 232, 505, 612, 630
BstNSI	RCATGY	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	523
BstUI	CGCG	2 cut(s)	81, 231
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	46, 544
BtuMI	TCGCGA	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	3 cut(s)	207, 231, 594
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	2 cut(s)	190, 304
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	5 cut(s)	165, 225, 273, 287, 575
DpnI	GATC	7 cut(s)	31, 135, 175, 234, 507, 614, 632
DpnII	GATC	7 cut(s)	29, 133, 173, 232, 505, 612, 630
Eam1104I	CTCTTC	2 cut(s)	447, 509
EarI	CTCTTC	2 cut(s)	447, 509
EciI	GGCGGA	1 cut(s)	42
Ecl136II	GAGCTC	2 cut(s)	380, 423
Eco24I	GRGCYC	3 cut(s)	382, 425, 561
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	2 cut(s)	380, 423
EcoICRI	GAGCTC	2 cut(s)	380, 423
EcoT38I	GRGCYC	3 cut(s)	382, 425, 561
FaeI	CATG	2 cut(s)	193, 307
FatI	CATG	2 cut(s)	189, 303
FokI	GGATG	2 cut(s)	53, 551
FriOI	GRGCYC	3 cut(s)	382, 425, 561
FspBI	CTAG	3 cut(s)	137, 356, 465
GlaI	GCGC	3 cut(s)	206, 230, 593
GsuI	CTGGAG	2 cut(s)	259, 314
HaeII	RGCGCY	1 cut(s)	208
HapII	CCGG	1 cut(s)	624
HhaI	GCGC	3 cut(s)	207, 231, 594
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	193, 307
Hin6I	GCGC	3 cut(s)	205, 229, 592
HinP1I	GCGC	3 cut(s)	205, 229, 592
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	7 cut(s)	64, 87, 110, 125, 283, 313, 455
HpaII	CCGG	1 cut(s)	624
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	4 cut(s)	40, 173, 318, 546
Hpy188III	TCNNGA	5 cut(s)	80, 91, 131, 238, 293
Hpy8I	GTNNAC	1 cut(s)	521
Hpy99I	CGWCG	2 cut(s)	20, 86
HpyAV	CCTTC	2 cut(s)	14, 368
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4V	TGCA	2 cut(s)	391, 521
HpyF3I	CTNAG	5 cut(s)	165, 225, 273, 287, 575
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	193, 307
HspAI	GCGC	3 cut(s)	205, 229, 592
Kzo9I	GATC	7 cut(s)	29, 133, 173, 232, 505, 612, 630
LmnI	GCTCC	1 cut(s)	377
LpnPI	CCDG	5 cut(s)	187, 223, 228, 278, 637
MaeI	CTAG	3 cut(s)	137, 356, 465
MalI	GATC	7 cut(s)	31, 135, 175, 234, 507, 614, 632
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	7 cut(s)	29, 133, 173, 232, 505, 612, 630
MboII	GAAGA	7 cut(s)	108, 255, 278, 334, 442, 464, 526
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	4 cut(s)	382, 425, 523, 561
MluCI	AATT	2 cut(s)	210, 565
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	241, 309
MseI	TTAA	1 cut(s)	219
MspI	CCGG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	450
MvnI	CGCG	2 cut(s)	81, 231
NdeII	GATC	7 cut(s)	29, 133, 173, 232, 505, 612, 630
NlaIII	CATG	2 cut(s)	193, 307
NlaIV	GGNNCC	1 cut(s)	31
NruI	TCGCGA	1 cut(s)	81
NspI	RCATGY	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	108
PciI	ACATGT	1 cut(s)	303
PctI	GAATGC	1 cut(s)	450
PfeI	GAWTC	6 cut(s)	64, 87, 110, 125, 283, 313
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PscI	ACATGT	1 cut(s)	303
Psp124BI	GAGCTC	2 cut(s)	382, 425
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	29
RruI	TCGCGA	1 cut(s)	81
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
SacI	GAGCTC	2 cut(s)	382, 425
SaqAI	TTAA	1 cut(s)	219
Sau3AI	GATC	7 cut(s)	29, 133, 173, 232, 505, 612, 630
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	464
SduI	GDGCHC	4 cut(s)	382, 425, 523, 561
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	71, 411
SmoI	CTYRAG	2 cut(s)	71, 411
Sse9I	AATT	2 cut(s)	210, 565
SsiI	CCGC	2 cut(s)	27, 347
SspMI	CTAG	3 cut(s)	137, 356, 465
SstI	GAGCTC	2 cut(s)	382, 425
TaaI	ACNGT	1 cut(s)	553
TaqI	TCGA	4 cut(s)	18, 90, 108, 308
TasI	AATT	2 cut(s)	210, 565
TfiI	GAWTC	6 cut(s)	64, 87, 110, 125, 283, 313
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TspDTI	ATGAA	1 cut(s)	649
TspGWI	ACGGA	2 cut(s)	99, 136
VneI	GTGCAC	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	169
XceI	RCATGY	1 cut(s)	307
XspI	CTAG	3 cut(s)	137, 356, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.