Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007710

Physical Location & Seq

Genomic Coordinates Forward (+)

20757067 .. 20759558

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G153200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCAATGTCGGTGGAAATCGGAGGAGGGACGTTATCGGAAATATATCAGAGCGCCAAGAAGCTATTGTTGAGAACAAGAGACGCCCTTGAGAAGCTGGAGAGATTGGAGAACGCAGGCGGCATCGACTCCCCGGACCTTTCCACGTCCGTCAAAAGAGACATTTCTCAGATTCAGTCTTTCTGCGCCGAGATGGACCGCCTCTGGCGATCTGTTGGCGCCAAATCCCAACGCGATCTCTGGAAAAGAAAAGTAGAACAAATAGCGGAAGAGGCTCAGTCTTTGAAAGAAAGTCTGGATAAGTATAATTTGAGGAATCAGAAGAGGGCCCAAGAAGCCAGAGAGAGGGCAGAGTTGCTTGGAAGAGCTAATGGGGAGGGTGCTCATGTTTTGAGAATCTTTGATGATGAGGCACAAGCAAGGGCGTCAGTTCGTAGTTCTTCTCGCATGCTTGAAGAAGCCAGTGCTACTGGAGAAAGTATTCTTAGGAAATATGCAGAACAAAGGGATTGGCTAAAGAGTGCACAACGAAAAGGATTGGATGTCCTGAACACAGTGGGTCTCTCTAACTCTGTTTTGAAGCTCATTGAGAGGCGGAACCGTGTTGATCAGTCGATCAAGTATGCAGGCATGATTCTGACTGTTGTCATTGTTGTGTATCTCATATGGAGGTGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002682 GO:0002791 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031347 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0048583 GO:0050708 GO:0050776 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0065007 GO:0070201 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080134 GO:0090087 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

227

Amino Acids

25.74

Weight (kDa)

9.64

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36900 AT2G36900 AT2G36900 AT5G50440 AT5G50440
fragaria_vesca	FvH4_3g25040
malus_domestica	MD02G1195300.v1.1
prunus_persica	Prupe.2G153200_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1
pyrus_communis	pycom02g15910
rosa_chinensis	RchiOBHm_Chr5g0045181
rosa_laevigata	RLG00000034341
rosa_multiflora	Rmu_sc0001773.1_g000012
rosa_roxburghii	Rroxscaffold_1G00035850
rosa_rugosa	Rorug05G0221300 Rorug05G0221400
rosa_samantha	Rh5AG302800 Rh5BG311300 Rh5CG337300 Rh5DG321500
rosa_wichuraiana	Rw5G028100 Rw5G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccII	CGCG	1 cut(s)	234
AciI	CCGC	4 cut(s)	120, 199, 266, 595
AcyI	GRCGYC	3 cut(s)	84, 219, 425
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	286, 455, 580
AjiI	CACGTC	1 cut(s)	147
AluBI	AGCT	4 cut(s)	64, 97, 368, 583
AluI	AGCT	4 cut(s)	64, 97, 368, 583
Alw21I	GWGCWC	2 cut(s)	385, 526
Alw26I	GTCTC	3 cut(s)	75, 153, 566
Alw44I	GTGCAC	1 cut(s)	522
AoxI	GGCC	1 cut(s)	327
ApaI	GGGCCC	1 cut(s)	331
ApaLI	GTGCAC	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	480
AspLEI	GCGC	3 cut(s)	56, 188, 221
AspS9I	GGNCC	4 cut(s)	136, 196, 327, 328
AsuC2I	CCSGG	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	136, 196
BaeGI	GKGCMC	2 cut(s)	331, 526
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	385, 526
BccI	CCATC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	607
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	3 cut(s)	75, 153, 566
BfoI	RGCGCY	2 cut(s)	57, 222
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	2 cut(s)	136, 196
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	4 cut(s)	136, 196, 327, 328
BmiI	GGNNCC	3 cut(s)	220, 329, 599
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	132
BoxI	GACNNNNGTC	1 cut(s)	644
BpmI	CTGGAG	2 cut(s)	119, 492
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	3 cut(s)	84, 219, 425
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	462, 475
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	182, 290
BseNI	ACTGG	2 cut(s)	462, 475
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	2 cut(s)	331, 526
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	2 cut(s)	385, 526
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	3 cut(s)	75, 153, 566
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	329
Bso31I	GGTCTC	1 cut(s)	566
Bsp120I	GGGCCC	1 cut(s)	327
Bsp1286I	GDGCHC	3 cut(s)	331, 385, 526
Bsp143I	GATC	4 cut(s)	209, 235, 607, 615
BspACI	CCGC	4 cut(s)	120, 199, 266, 595
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	2 cut(s)	181, 289
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	220, 329, 599
BspQI	GCTCTTC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	462, 475
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	4 cut(s)	209, 235, 607, 615
BssNI	GRCGYC	3 cut(s)	84, 219, 425
Bst4CI	ACNGT	3 cut(s)	556, 602, 643
Bst6I	CTCTTC	3 cut(s)	264, 317, 358
BstACI	GRCGYC	3 cut(s)	84, 219, 425
BstC8I	GCNNGC	3 cut(s)	118, 449, 628
BstDEI	CTNAG	3 cut(s)	168, 276, 485
BstF5I	GGATG	1 cut(s)	547
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	2 cut(s)	57, 222
BstHHI	GCGC	3 cut(s)	56, 188, 221
BstKTI	GATC	4 cut(s)	212, 238, 610, 618
BstMAI	GTCTC	3 cut(s)	75, 153, 566
BstMBI	GATC	4 cut(s)	209, 235, 607, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 335
BstNSI	RCATGY	1 cut(s)	451
BstPAI	GACNNNNGTC	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	132
BstSLI	GKGCMC	2 cut(s)	331, 526
BstUI	CGCG	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	329
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	469, 561
Cac8I	GCNNGC	3 cut(s)	118, 449, 628
CfoI	GCGC	3 cut(s)	56, 188, 221
Cfr13I	GGNCC	4 cut(s)	136, 196, 327, 328
CseI	GACGC	2 cut(s)	92, 414
CspCI	CAANNNNNGTGG	1 cut(s)	29
CviAII	CATG	3 cut(s)	386, 448, 631
CviJI	RGCY	9 cut(s)	64, 97, 275, 329, 338, 368, 461, 514, 583
CviKI_1	RGCY	9 cut(s)	64, 97, 275, 329, 338, 368, 461, 514, 583
DdeI	CTNAG	3 cut(s)	168, 276, 485
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	4 cut(s)	211, 237, 609, 617
DpnII	GATC	4 cut(s)	209, 235, 607, 615
Eam1104I	CTCTTC	3 cut(s)	264, 317, 358
EarI	CTCTTC	3 cut(s)	264, 317, 358
EciI	GGCGGA	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	2 cut(s)	136, 196
EcoO109I	RGGNCCY	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	331
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	3 cut(s)	389, 451, 634
FaiI	YATR	9 cut(s)	46, 306, 387, 449, 495, 624, 632, 665, 667
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	3 cut(s)	385, 447, 630
FauNDI	CATATG	1 cut(s)	665
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	121
GlaI	GCGC	3 cut(s)	55, 187, 220
GluI	GCNGC	1 cut(s)	121
GsuI	CTGGAG	2 cut(s)	119, 492
HaeII	RGCGCY	2 cut(s)	57, 222
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	2 cut(s)	92, 414
HhaI	GCGC	3 cut(s)	56, 188, 221
Hin1I	GRCGYC	3 cut(s)	84, 219, 425
Hin1II	CATG	3 cut(s)	389, 451, 634
Hin6I	GCGC	3 cut(s)	54, 186, 219
HinP1I	GCGC	3 cut(s)	54, 186, 219
HinfI	GANTC	5 cut(s)	128, 172, 316, 396, 634
HpaII	CCGG	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	6 cut(s)	23, 40, 51, 171, 321, 639
Hpy188III	TCNNGA	3 cut(s)	241, 296, 547
Hpy8I	GTNNAC	1 cut(s)	524
HpyCH4III	ACNGT	3 cut(s)	556, 602, 643
HpyCH4IV	ACGT	2 cut(s)	32, 146
HpyCH4V	TGCA	3 cut(s)	497, 524, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 335
HpyF3I	CTNAG	3 cut(s)	168, 276, 485
HpySE526I	ACGT	2 cut(s)	32, 146
Hsp92I	GRCGYC	3 cut(s)	84, 219, 425
Hsp92II	CATG	3 cut(s)	389, 451, 634
HspAI	GCGC	3 cut(s)	54, 186, 219
KasI	GGCGCC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	4 cut(s)	209, 235, 607, 615
LguI	GCTCTTC	1 cut(s)	358
LweI	GCATC	1 cut(s)	132
MaeII	ACGT	2 cut(s)	32, 146
MalI	GATC	4 cut(s)	211, 237, 609, 617
MboI	GATC	4 cut(s)	209, 235, 607, 615
MboII	GAAGA	5 cut(s)	281, 334, 375, 432, 467
MhlI	GDGCHC	3 cut(s)	331, 385, 526
MluCI	AATT	1 cut(s)	307
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	480
MslI	CAYNNNNRTG	1 cut(s)	653
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	272, 335
NarI	GGCGCC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	134
NdeI	CATATG	1 cut(s)	665
NdeII	GATC	4 cut(s)	209, 235, 607, 615
NlaIII	CATG	3 cut(s)	389, 451, 634
NlaIV	GGNNCC	3 cut(s)	220, 329, 599
NmeAIII	GCCGAG	1 cut(s)	214
NspI	RCATGY	1 cut(s)	451
PaeI	GCATGC	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	4 cut(s)	172, 316, 396, 634
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	122
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	122
PshAI	GACNNNNGTC	1 cut(s)	644
PspN4I	GGNNCC	3 cut(s)	220, 329, 599
PspOMI	GGGCCC	1 cut(s)	327
PspPI	GGNCC	4 cut(s)	136, 196, 327, 328
RseI	CAYNNNNRTG	1 cut(s)	653
SapI	GCTCTTC	1 cut(s)	358
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	4 cut(s)	209, 235, 607, 615
Sau96I	GGNCC	4 cut(s)	136, 196, 327, 328
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	3 cut(s)	331, 385, 526
SetI	ASST	9 cut(s)	35, 66, 99, 141, 149, 370, 585, 674, 680
SfaNI	GCATC	1 cut(s)	132
SfoI	GGCGCC	1 cut(s)	220
SinI	GGWCC	2 cut(s)	136, 196
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	4 cut(s)	120, 199, 266, 595
SspDI	GGCGCC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	556, 602, 643
TaiI	ACGT	2 cut(s)	35, 149
TaqI	TCGA	2 cut(s)	126, 614
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	4 cut(s)	172, 316, 396, 634
TscAI	CASTG	2 cut(s)	469, 561
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	2 cut(s)	469, 561
VneI	GTGCAC	1 cut(s)	522
VpaK11BI	GGWCC	2 cut(s)	136, 196
XceI	RCATGY	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.