Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007710

Physical Location & Seq

Genomic Coordinates Reverse (-)

18682471 .. 18684766

Gene Structure 2296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1195300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCATTGTCGGTGGAACTTGGAGGAGGGACGTTATCGGAGATATACCAGAGCGCCAAGAAAGTGTTGCTCAGAACAAGAGACGGCCTCGAGAGGCTGGAGAGGTTGGAGCACGCAGGTGGCGGCATCGACTCCCCGGACCTTTCTACCTCCGTCAAAAGAGATATCTCTCAGATCCAATCCCTCTGCGCCGAGATGGACCGACTCTGGCGATCTGTGGGTGCCAAATCTCAACGCGATCTCTGGAAAAGAAAAGTGGAACAAATAGCGGAAGAGGCTCAGTCCTTGAAAGATAGTTTGGATAGGTATGATGCGAGGAATCAGAAGAGGGCGACAGAAGCGAGAGAGAGGGCAGAGTTGCTTGGAAGAGCTAATGGGGATGGTGCTCATGTTATGAGAATCTTCGACGAGGAGGCGCAAGCAAGGGACTCAGTTCGTAACTCTGCTCGCATGCTTGAAGAAACCAATGCTACTGGGGAAGCTATTCTTAGAAAATATGCAGAACAGAGGGAATTTCTAAAGAGAGCACAACGAAAAGCACTGGATGTCCTGAACACAGTGGGTCTTTCCAACTCTGTATTGAAGCTCATTGAGAGGCGCAACCGTGTTGATCAGTGGATCAAGTACGCAGGCATGATTCTGACAGTCGTCGTTCTATTCCTCATATGGAGGTGGAGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002682 GO:0002791 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031347 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0048583 GO:0050708 GO:0050776 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0065007 GO:0070201 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080134 GO:0090087 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

228

Amino Acids

26.02

Weight (kDa)

9.74

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	136 - 201	7.1e-18	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36900 AT2G36900 AT2G36900 AT5G50440 AT5G50440
fragaria_vesca	FvH4_3g25040
malus_domestica	MD02G1195300.v1.1
prunus_persica	Prupe.2G153200_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1
pyrus_communis	pycom02g15910
rosa_chinensis	RchiOBHm_Chr5g0045181
rosa_laevigata	RLG00000034341
rosa_multiflora	Rmu_sc0001773.1_g000012
rosa_roxburghii	Rroxscaffold_1G00035850
rosa_rugosa	Rorug05G0221300 Rorug05G0221400
rosa_samantha	Rh5AG302800 Rh5BG311300 Rh5CG337300 Rh5DG321500
rosa_wichuraiana	Rw5G028100 Rw5G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	1 cut(s)	237
AciI	CCGC	2 cut(s)	123, 269
AclWI	GGATC	2 cut(s)	169, 626
AcsI	RAATTY	1 cut(s)	512
AfaI	GTAC	1 cut(s)	626
AgsI	TTSAA	3 cut(s)	289, 458, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	3 cut(s)	371, 482, 586
AluI	AGCT	3 cut(s)	371, 482, 586
Alw21I	GWGCWC	3 cut(s)	114, 388, 529
Alw26I	GTCTC	2 cut(s)	75, 670
AlwI	GGATC	2 cut(s)	169, 626
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	483
AspLEI	GCGC	4 cut(s)	56, 191, 418, 600
AspS9I	GGNCC	2 cut(s)	139, 199
AsuC2I	CCSGG	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	139, 199
BanI	GGYRCC	1 cut(s)	221
Bbv12I	GWGCWC	3 cut(s)	114, 388, 529
BccI	CCATC	2 cut(s)	190, 374
BceAI	ACGGC	1 cut(s)	100
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	75, 670
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	2 cut(s)	139, 199
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	139, 199
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	137
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	135, 301
BmuI	ACTGGG	1 cut(s)	483
BoxI	GACNNNNGTC	1 cut(s)	647
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BpmI	CTGGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	478, 546
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	385, 550
BseMII	CTCAG	4 cut(s)	85, 185, 293, 444
BseNI	ACTGG	2 cut(s)	478, 546
BseRI	GAGGAG	2 cut(s)	39, 425
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	3 cut(s)	114, 388, 529
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	2 cut(s)	43, 440
BsmAI	GTCTC	2 cut(s)	75, 670
BsmBI	CGTCTC	2 cut(s)	75, 670
BsmFI	GGGAC	2 cut(s)	43, 440
BsnI	GGCC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	3 cut(s)	114, 388, 529
Bsp143I	GATC	5 cut(s)	174, 212, 238, 610, 618
BspACI	CCGC	2 cut(s)	123, 269
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	4 cut(s)	84, 184, 292, 443
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	107
BspPI	GGATC	2 cut(s)	169, 626
BspQI	GCTCTTC	1 cut(s)	361
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	478, 546
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	5 cut(s)	174, 212, 238, 610, 618
Bst4CI	ACNGT	4 cut(s)	559, 605, 646, 681
Bst6I	CTCTTC	3 cut(s)	267, 320, 361
BstC8I	GCNNGC	5 cut(s)	114, 420, 448, 452, 631
BstDEI	CTNAG	5 cut(s)	71, 171, 279, 430, 488
BstF5I	GGATG	2 cut(s)	385, 550
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	4 cut(s)	56, 191, 418, 600
BstKTI	GATC	5 cut(s)	177, 215, 241, 613, 621
BstMAI	GTCTC	2 cut(s)	75, 670
BstMBI	GATC	5 cut(s)	174, 212, 238, 610, 618
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 338
BstNSI	RCATGY	1 cut(s)	454
BstPAI	GACNNNNGTC	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	385, 550
BtsIMutI	CAGTG	3 cut(s)	539, 564, 620
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	5 cut(s)	114, 420, 448, 452, 631
CfoI	GCGC	4 cut(s)	56, 191, 418, 600
Cfr13I	GGNCC	2 cut(s)	139, 199
Csp6I	GTAC	1 cut(s)	625
CviAII	CATG	3 cut(s)	389, 451, 634
CviJI	RGCY	6 cut(s)	87, 97, 278, 371, 482, 586
CviKI_1	RGCY	6 cut(s)	87, 97, 278, 371, 482, 586
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	5 cut(s)	71, 171, 279, 430, 488
DpnI	GATC	5 cut(s)	176, 214, 240, 612, 620
DpnII	GATC	5 cut(s)	174, 212, 238, 610, 618
Eam1104I	CTCTTC	3 cut(s)	267, 320, 361
EarI	CTCTTC	3 cut(s)	267, 320, 361
Eco32I	GATATC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	139, 199
Eco88I	CYCGRG	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	166
Esp3I	CGTCTC	2 cut(s)	75, 670
FaeI	CATG	3 cut(s)	392, 454, 637
FaiI	YATR	9 cut(s)	46, 309, 390, 395, 452, 498, 635, 665, 667
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	2 cut(s)	43, 440
FatI	CATG	3 cut(s)	388, 450, 633
FauNDI	CATATG	1 cut(s)	665
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	2 cut(s)	392, 557
Fsp4HI	GCNGC	1 cut(s)	124
GlaI	GCGC	4 cut(s)	55, 190, 417, 599
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	4 cut(s)	56, 191, 418, 600
Hin1II	CATG	3 cut(s)	392, 454, 637
Hin6I	GCGC	4 cut(s)	54, 189, 416, 598
HinP1I	GCGC	4 cut(s)	54, 189, 416, 598
HinfI	GANTC	6 cut(s)	131, 204, 319, 399, 428, 637
HpaII	CCGG	1 cut(s)	137
Hpy188I	TCNGA	5 cut(s)	40, 74, 174, 324, 642
Hpy188III	TCNNGA	3 cut(s)	91, 244, 550
Hpy99I	CGWCG	2 cut(s)	410, 653
HpyCH4III	ACNGT	4 cut(s)	559, 605, 646, 681
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 338
HpyF3I	CTNAG	5 cut(s)	71, 171, 279, 430, 488
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	392, 454, 637
HspAI	GCGC	4 cut(s)	54, 189, 416, 598
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	5 cut(s)	174, 212, 238, 610, 618
LguI	GCTCTTC	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	109
LweI	GCATC	2 cut(s)	135, 301
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	5 cut(s)	176, 214, 240, 612, 620
MboI	GATC	5 cut(s)	174, 212, 238, 610, 618
MboII	GAAGA	5 cut(s)	284, 337, 378, 394, 470
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	3 cut(s)	114, 388, 529
MluCI	AATT	1 cut(s)	512
MlyI	GAGTC	3 cut(s)	125, 198, 422
MmeI	TCCRAC	2 cut(s)	87, 594
MroXI	GAANNNNTTC	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	275, 338
NciI	CCSGG	1 cut(s)	137
NdeI	CATATG	1 cut(s)	665
NdeII	GATC	5 cut(s)	174, 212, 238, 610, 618
NlaIII	CATG	3 cut(s)	392, 454, 637
NlaIV	GGNNCC	1 cut(s)	223
NmeAIII	GCCGAG	1 cut(s)	217
NspI	RCATGY	1 cut(s)	454
OliI	CACNNNNGTG	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	454
PaeR7I	CTCGAG	1 cut(s)	89
PaqCI	CACCTGC	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	3 cut(s)	319, 399, 637
PkrI	GCNGC	1 cut(s)	125
PleI	GAGTC	3 cut(s)	125, 198, 422
PpsI	GAGTC	3 cut(s)	125, 198, 422
PshAI	GACNNNNGTC	1 cut(s)	647
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	139, 199
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	361
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	5 cut(s)	174, 212, 238, 610, 618
Sau96I	GGNCC	2 cut(s)	139, 199
SchI	GAGTC	3 cut(s)	125, 198, 422
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	3 cut(s)	114, 388, 529
SfaNI	GCATC	2 cut(s)	135, 301
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	2 cut(s)	139, 199
SlaI	CTCGAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	454
Sse9I	AATT	1 cut(s)	512
SsiI	CCGC	2 cut(s)	123, 269
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	4 cut(s)	559, 605, 646, 681
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	3 cut(s)	90, 129, 405
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	512
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	3 cut(s)	319, 399, 637
TscAI	CASTG	3 cut(s)	546, 564, 620
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	3 cut(s)	546, 564, 620
VpaK11BI	GGWCC	2 cut(s)	139, 199
XapI	RAATTY	1 cut(s)	512
XceI	RCATGY	1 cut(s)	454
XhoI	CTCGAG	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.