Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007710

Physical Location & Seq

Genomic Coordinates Reverse (-)

52183735 .. 52189356

Gene Structure 5622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGATTGTACAGATTACTTATCGATTTTCATCCGTTGAAATTCGACATATTTACCGTGAAGCAAATGGTGTTGCACATAGACTTGCACACCTTGCTAGCTATTTGTTGCTTGATGATGTTTGGTTAGATGAGACACCTGCTATTATTCGGGGTGTTCTCTACGAGGATTATTGTAATGCTTCTCTCGTAGCACGGGGTTCAGAACCAGCAACAGAAGGAATCGTCGCGGTTGCAATGGCGGTGGAAAGAGGAGGAGGGACGCTATCGGAGATATACCAGAGCGCGAAGAAGCTGTTGCTGAGAACGCGAGACGGCCTCGAGAGGCTGGAGAGGTTGGAGTACTCGAGCGGCATCGACTCCCCTGACCTTTGCATGTCCATCAGAAACGATCTTACTCAGATCCAATCTCTCTGCGCCGATATGGACCGCCTCTGGCGCTCCGTCGGCGCCAAGTCCCAACGCGATCTCTGGAAAAGAAAAGTGGAACAAGTAGCGGAAGAGGCCGAATCGTTGAAGGAGAGTTTGGATAAGTATAATTTGAGGAACCAGAGGAAGATGAATGAAGCCAGAGAGAGGGCGGAGTTGCTTGGAAGAGCTAATGGAGAGTCTTCTCATGTTATTAGAGTCTTTGATGAGGAGGCACAAGCAATGCAGTCAGCTCGTAACTCTTCTCGCATGCTTCACGAAGCCACGTCCGTCGGGGAAGCTATTCTTTCCAAATATGCAGGGCAAAGGGAACACATAAAGAGAGCACAACGAAAAGCACTCGATGTACTGAATACAGTGGGTCTGTCCAACTCTGTACTGAAGCTTATCGAGAGGCGGCACCGTGTTGATCAGTGGATCAAGTATGCAGGCATGATTTTGACAGTCGTTATTGTGTTTTTCTTTTGGAGGTGGACACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002682 GO:0002791 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031347 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0048583 GO:0050708 GO:0050776 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0065007 GO:0070201 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080134 GO:0090087 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

302

Amino Acids

34.58

Weight (kDa)

8.9

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	211 - 275	2.8e-15	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36900 AT2G36900 AT2G36900 AT5G50440 AT5G50440
fragaria_vesca	FvH4_3g25040
malus_domestica	MD02G1195300.v1.1
prunus_persica	Prupe.2G153200_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1
pyrus_communis	pycom02g15910
rosa_chinensis	RchiOBHm_Chr5g0045181
rosa_laevigata	RLG00000034341
rosa_multiflora	Rmu_sc0001773.1_g000012
rosa_roxburghii	Rroxscaffold_1G00035850
rosa_rugosa	Rorug05G0221300 Rorug05G0221400
rosa_samantha	Rh5AG302800 Rh5BG311300 Rh5CG337300 Rh5DG321500
rosa_wichuraiana	Rw5G028100 Rw5G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	145
AccB1I	GGYRCC	2 cut(s)	446, 825
AccBSI	CCGCTC	1 cut(s)	348
AccII	CGCG	4 cut(s)	227, 284, 307, 462
AciI	CCGC	7 cut(s)	227, 239, 348, 427, 494, 578, 823
AclWI	GGATC	2 cut(s)	394, 851
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	827
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	4 cut(s)	9, 341, 774, 804
AfiI	CCNNNNNNNGG	1 cut(s)	573
AgsI	TTSAA	2 cut(s)	38, 514
AjiI	CACGTC	1 cut(s)	693
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	6 cut(s)	99, 292, 596, 659, 707, 811
AluI	AGCT	6 cut(s)	99, 292, 596, 659, 707, 811
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	2 cut(s)	125, 303
AlwI	GGATC	2 cut(s)	394, 851
Ama87I	CYCGRG	2 cut(s)	317, 343
AoxI	GGCC	2 cut(s)	313, 501
ApoI	RAATTY	1 cut(s)	39
Asp700I	GAANNNNTTC	1 cut(s)	708
AspLEI	GCGC	4 cut(s)	284, 416, 438, 449
AspS9I	GGNCC	1 cut(s)	424
AsuNHI	GCTAGC	1 cut(s)	95
AvaI	CYCGRG	2 cut(s)	317, 343
AvaII	GGWCC	1 cut(s)	424
BanI	GGYRCC	2 cut(s)	446, 825
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	754
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	1 cut(s)	328
BcgI	CGANNNNNNTGC	2 cut(s)	641, 675
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	2 cut(s)	125, 303
BfaI	CTAG	1 cut(s)	96
BfoI	RGCGCY	2 cut(s)	439, 450
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	349, 824
BlsI	GCNGC	2 cut(s)	350, 825
BmcAI	AGTACT	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	2 cut(s)	317, 343
BmgBI	CACGTC	1 cut(s)	693
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	3 cut(s)	448, 545, 827
BmsI	GCATC	1 cut(s)	360
BmtI	GCTAGC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	600
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
BpmI	CTGGAG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse3DI	GCAATG	2 cut(s)	240, 654
Bse8I	GATNNNNATC	1 cut(s)	28
BseCI	ATCGAT	1 cut(s)	22
BseGI	GGATG	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMI	GCAATG	2 cut(s)	240, 654
BseMII	CTCAG	2 cut(s)	290, 410
BseRI	GAGGAG	3 cut(s)	264, 267, 650
Bsh1236I	CGCG	4 cut(s)	227, 284, 307, 462
BshFI	GGCC	2 cut(s)	315, 503
BshNI	GGYRCC	2 cut(s)	446, 825
BshVI	ATCGAT	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	754
BsiHKCI	CYCGRG	2 cut(s)	317, 343
BslFI	GGGAC	2 cut(s)	271, 439
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	2 cut(s)	125, 303
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	2 cut(s)	271, 439
BsnI	GGCC	2 cut(s)	315, 503
BsoBI	CYCGRG	2 cut(s)	317, 343
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	5 cut(s)	388, 399, 463, 835, 843
BspACI	CCGC	7 cut(s)	227, 239, 348, 427, 494, 578, 823
BspANI	GGCC	2 cut(s)	315, 503
BspCNI	CTCAG	2 cut(s)	291, 409
BspDI	ATCGAT	1 cut(s)	22
BspFNI	CGCG	4 cut(s)	227, 284, 307, 462
BspLI	GGNNCC	3 cut(s)	448, 545, 827
BspMI	ACCTGC	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	2 cut(s)	394, 851
BspQI	GCTCTTC	1 cut(s)	586
BspT107I	GGYRCC	2 cut(s)	446, 825
BsrBI	CCGCTC	1 cut(s)	348
BsrDI	GCAATG	2 cut(s)	240, 654
BsrGI	TGTACA	1 cut(s)	7
BssMI	GATC	5 cut(s)	388, 399, 463, 835, 843
BssNI	GRCGYC	1 cut(s)	447
Bst4CI	ACNGT	4 cut(s)	56, 784, 830, 871
Bst6I	CTCTTC	3 cut(s)	492, 586, 673
BstACI	GRCGYC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	7
BstC8I	GCNNGC	3 cut(s)	97, 677, 856
BstDEI	CTNAG	2 cut(s)	299, 396
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	4 cut(s)	227, 284, 307, 462
BstH2I	RGCGCY	2 cut(s)	439, 450
BstHHI	GCGC	4 cut(s)	284, 416, 438, 449
BstKTI	GATC	5 cut(s)	391, 402, 466, 838, 846
BstMAI	GTCTC	2 cut(s)	125, 303
BstMBI	GATC	5 cut(s)	388, 399, 463, 835, 843
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 304, 435, 444, 500
BstNSI	RCATGY	2 cut(s)	376, 679
BstUI	CGCG	4 cut(s)	227, 284, 307, 462
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
Bsu15I	ATCGAT	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	315, 503
BsuTUI	ATCGAT	1 cut(s)	22
BtrI	CACGTC	1 cut(s)	693
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	789, 845
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	97, 677, 856
CfoI	GCGC	4 cut(s)	284, 416, 438, 449
Cfr13I	GGNCC	1 cut(s)	424
ClaI	ATCGAT	1 cut(s)	22
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	4 cut(s)	8, 340, 773, 803
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	4 cut(s)	373, 614, 676, 859
CviQI	GTAC	4 cut(s)	8, 340, 773, 803
DdeI	CTNAG	2 cut(s)	299, 396
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	5 cut(s)	390, 401, 465, 837, 845
DpnII	GATC	5 cut(s)	388, 399, 463, 835, 843
Eam1104I	CTCTTC	3 cut(s)	492, 586, 673
EarI	CTCTTC	3 cut(s)	492, 586, 673
EciI	GGCGGA	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	827
Eco88I	CYCGRG	2 cut(s)	317, 343
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	4 cut(s)	376, 617, 679, 862
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FaqI	GGGAC	2 cut(s)	271, 439
FatI	CATG	4 cut(s)	372, 613, 675, 858
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	2 cut(s)	349, 824
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	349, 824
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	4 cut(s)	283, 415, 437, 448
GluI	GCNGC	2 cut(s)	349, 824
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	2 cut(s)	439, 450
HaeIII	GGCC	2 cut(s)	315, 503
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	4 cut(s)	284, 416, 438, 449
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	4 cut(s)	376, 617, 679, 862
Hin6I	GCGC	4 cut(s)	282, 414, 436, 447
HinP1I	GCGC	4 cut(s)	282, 414, 436, 447
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	5 cut(s)	219, 356, 506, 605, 624
Hpy166II	GTNNAC	1 cut(s)	900
Hpy188I	TCNGA	4 cut(s)	202, 268, 383, 399
Hpy188III	TCNNGA	4 cut(s)	319, 469, 683, 817
Hpy8I	GTNNAC	1 cut(s)	900
Hpy99I	CGWCG	3 cut(s)	227, 446, 701
HpyAV	CCTTC	2 cut(s)	209, 508
HpyCH4III	ACNGT	4 cut(s)	56, 784, 830, 871
HpyCH4IV	ACGT	1 cut(s)	692
HpyCH4V	TGCA	7 cut(s)	74, 86, 233, 372, 652, 725, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 304, 435, 444, 500
HpyF3I	CTNAG	2 cut(s)	299, 396
HpySE526I	ACGT	1 cut(s)	692
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	4 cut(s)	376, 617, 679, 862
HspAI	GCGC	4 cut(s)	282, 414, 436, 447
KasI	GGCGCC	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	5 cut(s)	388, 399, 463, 835, 843
LguI	GCTCTTC	1 cut(s)	586
LmnI	GCTCC	1 cut(s)	443
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	5 cut(s)	390, 401, 465, 837, 845
MbiI	CCGCTC	1 cut(s)	348
MboI	GATC	5 cut(s)	388, 399, 463, 835, 843
MboII	GAAGA	6 cut(s)	298, 509, 565, 600, 603, 660
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	754
MluCI	AATT	2 cut(s)	39, 535
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	3 cut(s)	350, 614, 633
MmeI	TCCRAC	2 cut(s)	315, 819
MroXI	GAANNNNTTC	1 cut(s)	708
MvnI	CGCG	4 cut(s)	227, 284, 307, 462
MwoI	GCNNNNNNNGC	5 cut(s)	92, 304, 435, 444, 500
NarI	GGCGCC	1 cut(s)	447
NdeII	GATC	5 cut(s)	388, 399, 463, 835, 843
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	4 cut(s)	376, 617, 679, 862
NlaIV	GGNNCC	3 cut(s)	448, 545, 827
NspI	RCATGY	2 cut(s)	376, 679
PaeI	GCATGC	1 cut(s)	679
PaeR7I	CTCGAG	2 cut(s)	317, 343
PaqCI	CACCTGC	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	586
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	219, 506
PkrI	GCNGC	2 cut(s)	350, 825
PleI	GAGTC	3 cut(s)	350, 613, 632
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	3 cut(s)	350, 613, 632
PspN4I	GGNNCC	3 cut(s)	448, 545, 827
PspPI	GGNCC	1 cut(s)	424
PspXI	VCTCGAGB	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	4 cut(s)	9, 341, 774, 804
RsaNI	GTAC	4 cut(s)	8, 340, 773, 803
SapI	GCTCTTC	1 cut(s)	586
SatI	GCNGC	2 cut(s)	349, 824
Sau3AI	GATC	5 cut(s)	388, 399, 463, 835, 843
Sau96I	GGNCC	1 cut(s)	424
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	3 cut(s)	350, 614, 633
SduI	GDGCHC	1 cut(s)	754
SfaNI	GCATC	1 cut(s)	360
SfoI	GGCGCC	1 cut(s)	448
Sfr274I	CTCGAG	2 cut(s)	317, 343
SinI	GGWCC	1 cut(s)	424
SlaI	CTCGAG	2 cut(s)	317, 343
SmlI	CTYRAG	2 cut(s)	317, 343
SmoI	CTYRAG	2 cut(s)	317, 343
SphI	GCATGC	1 cut(s)	679
Sse9I	AATT	2 cut(s)	39, 535
SsiI	CCGC	7 cut(s)	227, 239, 348, 427, 494, 578, 823
SspDI	GGCGCC	1 cut(s)	446
SspMI	CTAG	1 cut(s)	96
TaaI	ACNGT	4 cut(s)	56, 784, 830, 871
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	7 cut(s)	22, 43, 318, 344, 354, 768, 816
TasI	AATT	2 cut(s)	39, 535
TatI	WGTACW	4 cut(s)	7, 339, 772, 802
TauI	GCSGC	2 cut(s)	351, 826
TfiI	GAWTC	2 cut(s)	219, 506
TscAI	CASTG	2 cut(s)	789, 845
TspDTI	ATGAA	3 cut(s)	18, 572, 576
TspGWI	ACGGA	3 cut(s)	22, 430, 685
TspRI	CASTG	2 cut(s)	789, 845
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	2 cut(s)	376, 679
XhoI	CTCGAG	2 cut(s)	317, 343
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	1 cut(s)	96
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.