Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007710

Physical Location & Seq

Genomic Coordinates Forward (+)

3515060 .. 3518570

Gene Structure 3511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G022400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCTTTTGGAGACTGCTCTGTTTCTTCTATGGTCTTGGTGTGGCTGTTTTCTTCTATGGCGTTGTGTTGTTGTGGCTTTCATTGCTTTATGGTATGAATCATTTGGAGCTCTTGGTTGTTTTGCTTTTGGTGAAAAGACCAAAGACATAATCACCGCCAATTTTGGGCAAAGCTTGGTAAATGAAATATTGAAGCAAAGATTGCTAATCGGAATCACAATTGCAATGGCAATGTCAGTGGAAATCGGAGGAGGGACGTTATCAGAGATATATCAGAGCGCCAAGAAGCTGTTGCTAAGAACAAGAGATGGCCTTGAGAAGCTGGAGAGATTGGAGAATGCAGGCGGCATCGACTCCCCGGACCTCTCCACGTCTGTCAAAAGAGACATTTCTCAGATCCAGTCCCTCTGCTCCGAGATGGACCGCCTCTGGCGATCTGTTGGCGCCAAATCTCAACGTGATCTCTGGAAAAGAAAAGTAGAACAAATAGCGGAAGAGGCTCAGTCTTTGAAAGAAAGTCTGGATAAGTATAATTTGAGGAATCAGAAGAGGGCCCAAGAAGCCAGAGAGAGATCAGAGTTGCTTGGAAGAGCTAATGGGGAGGGTGCTCATGTTTTGAGAATCTTCGATGATGAGGCACAAGCAAGGGCGTCAGTTCATAGTTCTTCTCGCATGCTTGAAGAAGCCAGCGCTACTGGGGAAAGTATTCTCAGGAAATATGCAGAACAAAGGGATTGGCTAAAGAGCGCACAACGAAAAGGACTGGATGTCCTGAACACAATGGGTCTCTCTAACTCTGTATTGAAGCTCATTGAGAGGCGGAACCGTGTCGATCAGTCGATCAAGTATGCAGGCATGGTTCTGACAGTTGTCATTGTTGTGTATCTCATATGGAGGTGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002682 GO:0002791 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031347 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0048583 GO:0050708 GO:0050776 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0065007 GO:0070201 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080134 GO:0090087 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

302

Amino Acids

34.18

Weight (kDa)

9.16

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36900 AT2G36900 AT2G36900 AT5G50440 AT5G50440
fragaria_vesca	FvH4_3g25040
malus_domestica	MD02G1195300.v1.1
prunus_persica	Prupe.2G153200_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1
pyrus_communis	pycom02g15910
rosa_chinensis	RchiOBHm_Chr5g0045181
rosa_laevigata	RLG00000034341
rosa_multiflora	Rmu_sc0001773.1_g000012
rosa_roxburghii	Rroxscaffold_1G00035850
rosa_rugosa	Rorug05G0221300 Rorug05G0221400
rosa_samantha	Rh5AG302800 Rh5BG311300 Rh5CG337300 Rh5DG321500
rosa_wichuraiana	Rw5G028100 Rw5G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AciI	CCGC	5 cut(s)	156, 345, 424, 491, 820
AclWI	GGATC	1 cut(s)	391
AcyI	GRCGYC	2 cut(s)	444, 650
AfeI	AGCGCT	1 cut(s)	691
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	193, 511, 680, 805
AhdI	GACNNNNNGTC	1 cut(s)	767
AjiI	CACGTC	1 cut(s)	372
AluBI	AGCT	6 cut(s)	110, 174, 289, 322, 593, 808
AluI	AGCT	6 cut(s)	110, 174, 289, 322, 593, 808
Alw21I	GWGCWC	2 cut(s)	112, 610
Alw26I	GTCTC	3 cut(s)	5, 378, 791
AlwI	GGATC	1 cut(s)	391
Aor51HI	AGCGCT	1 cut(s)	691
AoxI	GGCC	2 cut(s)	310, 552
ApaI	GGGCCC	1 cut(s)	556
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	4 cut(s)	281, 446, 692, 749
AspS9I	GGNCC	4 cut(s)	361, 421, 552, 553
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	143, 145
AvaII	GGWCC	2 cut(s)	361, 421
BaeGI	GKGCMC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	2 cut(s)	112, 556
Bbv12I	GWGCWC	2 cut(s)	112, 610
BccI	CCATC	2 cut(s)	302, 412
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	3 cut(s)	5, 378, 791
BfoI	RGCGCY	3 cut(s)	282, 447, 693
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	2 cut(s)	361, 421
BmeRI	GACNNNNNGTC	1 cut(s)	767
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	4 cut(s)	361, 421, 552, 553
BmiI	GGNNCC	3 cut(s)	445, 554, 824
BmrFI	CCNGG	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	705
BoxI	GACNNNNGTC	1 cut(s)	869
BpmI	CTGGAG	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	359
BsaHI	GRCGYC	2 cut(s)	444, 650
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	3 cut(s)	400, 700, 768
Bse3DI	GCAATG	3 cut(s)	81, 231, 237
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMI	GCAATG	3 cut(s)	81, 231, 237
BseMII	CTCAG	3 cut(s)	407, 515, 724
BseNI	ACTGG	3 cut(s)	400, 700, 768
BseRI	GAGGAG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	556
BshFI	GGCC	2 cut(s)	312, 554
BshNI	GGYRCC	1 cut(s)	443
BsiHKAI	GWGCWC	2 cut(s)	112, 610
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	2 cut(s)	268, 388
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	3 cut(s)	5, 378, 791
BsmFI	GGGAC	2 cut(s)	268, 388
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	312, 554
Bso31I	GGTCTC	1 cut(s)	791
Bsp120I	GGGCCC	1 cut(s)	552
Bsp1286I	GDGCHC	3 cut(s)	112, 556, 610
Bsp143I	GATC	6 cut(s)	396, 434, 460, 572, 832, 840
BspACI	CCGC	5 cut(s)	156, 345, 424, 491, 820
BspANI	GGCC	2 cut(s)	312, 554
BspCNI	CTCAG	3 cut(s)	406, 514, 723
BspLI	GGNNCC	3 cut(s)	445, 554, 824
BspPI	GGATC	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	583
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	791
BsrDI	GCAATG	3 cut(s)	81, 231, 237
BsrI	ACTGG	3 cut(s)	400, 700, 768
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	6 cut(s)	396, 434, 460, 572, 832, 840
BssNI	GRCGYC	2 cut(s)	444, 650
Bst4CI	ACNGT	2 cut(s)	827, 868
Bst6I	CTCTTC	3 cut(s)	489, 542, 583
BstACI	GRCGYC	2 cut(s)	444, 650
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstC8I	GCNNGC	4 cut(s)	343, 674, 688, 853
BstDEI	CTNAG	4 cut(s)	296, 393, 501, 710
BstF5I	GGATG	1 cut(s)	772
BstH2I	RGCGCY	3 cut(s)	282, 447, 693
BstHHI	GCGC	4 cut(s)	281, 446, 692, 749
BstKTI	GATC	6 cut(s)	399, 437, 463, 575, 835, 843
BstMAI	GTCTC	3 cut(s)	5, 378, 791
BstMBI	GATC	6 cut(s)	396, 434, 460, 572, 832, 840
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 202, 497, 560
BstNSI	RCATGY	1 cut(s)	676
BstPAI	GACNNNNGTC	1 cut(s)	869
BstSCI	CCNGG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	312, 554
BtrI	CACGTC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	772
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	4 cut(s)	343, 674, 688, 853
CfoI	GCGC	4 cut(s)	281, 446, 692, 749
Cfr13I	GGNCC	4 cut(s)	361, 421, 552, 553
CseI	GACGC	1 cut(s)	639
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	3 cut(s)	611, 673, 856
DdeI	CTNAG	4 cut(s)	296, 393, 501, 710
DinI	GGCGCC	1 cut(s)	445
DpnI	GATC	6 cut(s)	398, 436, 462, 574, 834, 842
DpnII	GATC	6 cut(s)	396, 434, 460, 572, 832, 840
DriI	GACNNNNNGTC	1 cut(s)	767
Eam1104I	CTCTTC	3 cut(s)	489, 542, 583
Eam1105I	GACNNNNNGTC	1 cut(s)	767
EarI	CTCTTC	3 cut(s)	489, 542, 583
EciI	GGCGGA	1 cut(s)	835
Ecl136II	GAGCTC	1 cut(s)	110
Eco24I	GRGCYC	2 cut(s)	112, 556
Eco31I	GGTCTC	1 cut(s)	791
Eco47I	GGWCC	2 cut(s)	361, 421
Eco47III	AGCGCT	1 cut(s)	691
Eco53kI	GAGCTC	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	552
EcoT38I	GRGCYC	2 cut(s)	112, 556
EgeI	GGCGCC	1 cut(s)	445
EheI	GGCGCC	1 cut(s)	445
FaeI	CATG	3 cut(s)	614, 676, 859
FaqI	GGGAC	2 cut(s)	268, 388
FatI	CATG	3 cut(s)	610, 672, 855
FauNDI	CATATG	1 cut(s)	890
Fnu4HI	GCNGC	1 cut(s)	346
FokI	GGATG	1 cut(s)	779
FriOI	GRGCYC	2 cut(s)	112, 556
Fsp4HI	GCNGC	1 cut(s)	346
GlaI	GCGC	4 cut(s)	280, 445, 691, 748
GluI	GCNGC	1 cut(s)	346
GsuI	CTGGAG	1 cut(s)	344
HaeII	RGCGCY	3 cut(s)	282, 447, 693
HaeIII	GGCC	2 cut(s)	312, 554
HapII	CCGG	1 cut(s)	359
HgaI	GACGC	1 cut(s)	639
HhaI	GCGC	4 cut(s)	281, 446, 692, 749
Hin1I	GRCGYC	2 cut(s)	444, 650
Hin1II	CATG	3 cut(s)	614, 676, 859
Hin6I	GCGC	4 cut(s)	279, 444, 690, 747
HinP1I	GCGC	4 cut(s)	279, 444, 690, 747
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	5 cut(s)	98, 213, 353, 541, 621
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	143, 145
Hpy188I	TCNGA	9 cut(s)	212, 248, 265, 276, 396, 415, 546, 577, 864
Hpy188III	TCNNGA	4 cut(s)	466, 521, 712, 772
HpyCH4III	ACNGT	2 cut(s)	827, 868
HpyCH4IV	ACGT	3 cut(s)	257, 371, 457
HpyCH4V	TGCA	4 cut(s)	224, 341, 722, 851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 202, 497, 560
HpyF3I	CTNAG	4 cut(s)	296, 393, 501, 710
HpySE526I	ACGT	3 cut(s)	257, 371, 457
Hsp92I	GRCGYC	2 cut(s)	444, 650
Hsp92II	CATG	3 cut(s)	614, 676, 859
HspAI	GCGC	4 cut(s)	279, 444, 690, 747
KasI	GGCGCC	1 cut(s)	443
Kzo9I	GATC	6 cut(s)	396, 434, 460, 572, 832, 840
LguI	GCTCTTC	1 cut(s)	583
LmnI	GCTCC	2 cut(s)	107, 416
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	3 cut(s)	257, 371, 457
MalI	GATC	6 cut(s)	398, 436, 462, 574, 834, 842
MboI	GATC	6 cut(s)	396, 434, 460, 572, 832, 840
MboII	GAAGA	8 cut(s)	17, 44, 506, 559, 600, 616, 657, 692
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	3 cut(s)	112, 556, 610
MluCI	AATT	3 cut(s)	160, 219, 532
Mly113I	GGCGCC	1 cut(s)	444
MlyI	GAGTC	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	705
MslI	CAYNNNNRTG	1 cut(s)	878
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	4 cut(s)	83, 202, 497, 560
NarI	GGCGCC	1 cut(s)	444
NciI	CCSGG	1 cut(s)	359
NdeI	CATATG	1 cut(s)	890
NdeII	GATC	6 cut(s)	396, 434, 460, 572, 832, 840
NlaIII	CATG	3 cut(s)	614, 676, 859
NlaIV	GGNNCC	3 cut(s)	445, 554, 824
NspI	RCATGY	1 cut(s)	676
PaeI	GCATGC	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	583
PctI	GAATGC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	4 cut(s)	98, 213, 541, 621
PkrI	GCNGC	1 cut(s)	347
PleI	GAGTC	1 cut(s)	347
PluTI	GGCGCC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	347
PshAI	GACNNNNGTC	1 cut(s)	869
Psp124BI	GAGCTC	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	445, 554, 824
PspOMI	GGGCCC	1 cut(s)	552
PspPI	GGNCC	4 cut(s)	361, 421, 552, 553
PsuI	RGATCY	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	878
SacI	GAGCTC	1 cut(s)	112
SapI	GCTCTTC	1 cut(s)	583
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	6 cut(s)	396, 434, 460, 572, 832, 840
Sau96I	GGNCC	4 cut(s)	361, 421, 552, 553
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	3 cut(s)	112, 556, 610
SfaNI	GCATC	1 cut(s)	357
SfoI	GGCGCC	1 cut(s)	445
SinI	GGWCC	2 cut(s)	361, 421
SmiMI	CAYNNNNRTG	1 cut(s)	878
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SphI	GCATGC	1 cut(s)	676
Sse9I	AATT	3 cut(s)	160, 219, 532
SsiI	CCGC	5 cut(s)	156, 345, 424, 491, 820
SspDI	GGCGCC	1 cut(s)	443
SspI	AATATT	1 cut(s)	189
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	827, 868
TaiI	ACGT	3 cut(s)	260, 374, 460
TaqI	TCGA	4 cut(s)	351, 627, 831, 839
TasI	AATT	3 cut(s)	160, 219, 532
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	4 cut(s)	98, 213, 541, 621
TscAI	CASTG	1 cut(s)	243
TspDTI	ATGAA	4 cut(s)	70, 111, 198, 647
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	2 cut(s)	361, 421
XceI	RCATGY	1 cut(s)	676
XmnI	GAANNNNTTC	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.