Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007710

Physical Location & Seq

Genomic Coordinates Forward (+)

41072177 .. 41078842

Gene Structure 6666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034341

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTGTGAATTTACAGCGTGGCGTAATGGTGTTGGATGGTTGATTTGTCCTCCCGTCTTTGCTACATTTTCCCAATTCATTCTACCATTGAAGAGTTCTACAAAGCAAGTCTCTACCCAGTCCCTCCTGATCCATCACTCTTCTTTCACTTCTCAACCGCCCTCGGAATCTCTCGGTTTCCGGCCCGCAGAACCAGCAACAGAAGGAATCGTCGCGGTTGCAATGGCGGTGGAAAGAGGAGGAGGGACGCTATCGGAGATATACCAGAGCGCGAAGAAGCTGTTGCTGAGAACGCGCGACGGCCTCGAGAGGCTGGAGAGGTTGGAGTACTCGAGCGGCATCGACTCCCCTGACCTTTGCATGTCCATCAAGAACGATCTTTCTCAGATCCAATCTCTCTGCGCCGATATGGACCGCCTCTGGCGCTCCGTAGGCGCCAAGTCCCAACGCGATCTCTGGAAAAGAAAAGTGGAACAAGTAGCGGAAGAGGCCGAATCGTTGAAGGAGAGTTTGGATAAGTATAATTTGAGGAACCAGAGGAAGATGAATGAAGCCAGAGAGAGGGCGGAGTTGCTTGGAAGAGCTAATGGAGAGTCTTCTCATGTTATTAGAGTCTTTGATGAGGAGGCGCAAGCAATGCAGTCCGCTCGTAATTCTTCTCGCATGCTTCACGAAGCCACGTCGGTCGGGGAAGCTATTCTTTCCAAATATGCAGGGCAAAGGGAACACATAAAGAGAGCACAACGAAAAGCACTCGATGTCCTGAACACAGTGGGTCTGTCCAACTCTGTACTGAAGCTTATCGAGAGGCGGCACCGTGTTGATCAGTGGATCAAGTATGCAGGCATGATTTTGACAGTCGTTATTGTGTTTTTCTTTTGGAGGTGGACACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002682 GO:0002791 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031347 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0048583 GO:0050708 GO:0050776 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0065007 GO:0070201 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080134 GO:0090087 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

299

Amino Acids

33.87

Weight (kDa)

9.39

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	207 - 271	2.7e-15	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36900 AT2G36900 AT2G36900 AT5G50440 AT5G50440
fragaria_vesca	FvH4_3g25040
malus_domestica	MD02G1195300.v1.1
prunus_persica	Prupe.2G153200_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1
pyrus_communis	pycom02g15910
rosa_chinensis	RchiOBHm_Chr5g0045181
rosa_laevigata	RLG00000034341
rosa_multiflora	Rmu_sc0001773.1_g000012
rosa_roxburghii	Rroxscaffold_1G00035850
rosa_rugosa	Rorug05G0221300 Rorug05G0221400
rosa_samantha	Rh5AG302800 Rh5BG311300 Rh5CG337300 Rh5DG321500
rosa_wichuraiana	Rw5G028100 Rw5G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	434, 813
AccBSI	CCGCTC	2 cut(s)	336, 647
AccII	CGCG	5 cut(s)	215, 272, 295, 297, 450
AclWI	GGATC	3 cut(s)	124, 382, 839
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	815
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	2 cut(s)	329, 792
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	2 cut(s)	91, 502
AjiI	CACGTC	1 cut(s)	681
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	4 cut(s)	280, 584, 695, 799
AluI	AGCT	4 cut(s)	280, 584, 695, 799
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	3 cut(s)	124, 382, 839
Ama87I	CYCGRG	2 cut(s)	305, 331
AoxI	GGCC	3 cut(s)	182, 301, 489
ApoI	RAATTY	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	6 cut(s)	272, 297, 404, 426, 437, 631
AspS9I	GGNCC	2 cut(s)	183, 412
AvaI	CYCGRG	2 cut(s)	305, 331
AvaII	GGWCC	1 cut(s)	412
BanI	GGYRCC	2 cut(s)	434, 813
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	742
BccI	CCATC	3 cut(s)	30, 141, 374
BceAI	ACGGC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BclI	TGATCA	1 cut(s)	823
BcoDI	GTCTC	1 cut(s)	115
BfoI	RGCGCY	2 cut(s)	427, 438
BisI	GCNGC	2 cut(s)	337, 812
BlsI	GCNGC	2 cut(s)	338, 813
BmcAI	AGTACT	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	2 cut(s)	305, 331
BmgBI	CACGTC	1 cut(s)	681
BmgT120I	GGNCC	2 cut(s)	183, 412
BmiI	GGNNCC	3 cut(s)	436, 533, 815
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	588
BpmI	CTGGAG	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	2 cut(s)	228, 642
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	2 cut(s)	228, 642
BseMII	CTCAG	2 cut(s)	278, 398
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	3 cut(s)	252, 255, 638
Bsh1236I	CGCG	5 cut(s)	215, 272, 295, 297, 450
Bsh1285I	CGRYCG	1 cut(s)	687
BshFI	GGCC	3 cut(s)	184, 303, 491
BshNI	GGYRCC	2 cut(s)	434, 813
BsiEI	CGRYCG	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	742
BsiHKCI	CYCGRG	2 cut(s)	305, 331
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	3 cut(s)	106, 259, 427
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	3 cut(s)	106, 259, 427
BsnI	GGCC	3 cut(s)	184, 303, 491
BsoBI	CYCGRG	2 cut(s)	305, 331
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp143I	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
BspANI	GGCC	3 cut(s)	184, 303, 491
BspCNI	CTCAG	2 cut(s)	279, 397
BspFNI	CGCG	5 cut(s)	215, 272, 295, 297, 450
BspLI	GGNNCC	3 cut(s)	436, 533, 815
BspPI	GGATC	3 cut(s)	124, 382, 839
BspQI	GCTCTTC	1 cut(s)	574
BspT107I	GGYRCC	2 cut(s)	434, 813
BsrBI	CCGCTC	2 cut(s)	336, 647
BsrDI	GCAATG	2 cut(s)	228, 642
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
BssNI	GRCGYC	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	772, 818, 859
Bst6I	CTCTTC	4 cut(s)	86, 145, 480, 574
BstACI	GRCGYC	1 cut(s)	435
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstC8I	GCNNGC	4 cut(s)	186, 633, 665, 844
BstDEI	CTNAG	2 cut(s)	287, 384
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	5 cut(s)	215, 272, 295, 297, 450
BstH2I	RGCGCY	2 cut(s)	427, 438
BstHHI	GCGC	6 cut(s)	272, 297, 404, 426, 437, 631
BstKTI	GATC	6 cut(s)	132, 379, 390, 454, 826, 834
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
BstMCI	CGRYCG	1 cut(s)	687
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 292, 423, 432, 488, 637
BstNSI	RCATGY	2 cut(s)	364, 667
BstUI	CGCG	5 cut(s)	215, 272, 295, 297, 450
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	184, 303, 491
BtrI	CACGTC	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	777, 833
Cac8I	GCNNGC	4 cut(s)	186, 633, 665, 844
CfoI	GCGC	6 cut(s)	272, 297, 404, 426, 437, 631
Cfr13I	GGNCC	2 cut(s)	183, 412
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	328, 791
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	4 cut(s)	361, 602, 664, 847
CviQI	GTAC	2 cut(s)	328, 791
DdeI	CTNAG	2 cut(s)	287, 384
DinI	GGCGCC	1 cut(s)	436
DpnI	GATC	6 cut(s)	131, 378, 389, 453, 825, 833
DpnII	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
Eam1104I	CTCTTC	4 cut(s)	86, 145, 480, 574
EarI	CTCTTC	4 cut(s)	86, 145, 480, 574
EciI	GGCGGA	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	815
Eco88I	CYCGRG	2 cut(s)	305, 331
EgeI	GGCGCC	1 cut(s)	436
EheI	GGCGCC	1 cut(s)	436
FaeI	CATG	4 cut(s)	364, 605, 667, 850
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	3 cut(s)	106, 259, 427
FatI	CATG	4 cut(s)	360, 601, 663, 846
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	823
Fnu4HI	GCNGC	2 cut(s)	337, 812
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	337, 812
GlaI	GCGC	6 cut(s)	271, 296, 403, 425, 436, 630
GluI	GCNGC	2 cut(s)	337, 812
GsuI	CTGGAG	1 cut(s)	335
HaeII	RGCGCY	2 cut(s)	427, 438
HaeIII	GGCC	3 cut(s)	184, 303, 491
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	6 cut(s)	272, 297, 404, 426, 437, 631
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	364, 605, 667, 850
Hin6I	GCGC	6 cut(s)	270, 295, 402, 424, 435, 629
HinP1I	GCGC	6 cut(s)	270, 295, 402, 424, 435, 629
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	6 cut(s)	167, 207, 344, 494, 593, 612
HpaII	CCGG	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	888
Hpy188I	TCNGA	3 cut(s)	166, 256, 387
Hpy188III	TCNNGA	7 cut(s)	127, 307, 370, 457, 671, 763, 805
Hpy8I	GTNNAC	1 cut(s)	888
Hpy99I	CGWCG	3 cut(s)	215, 302, 685
HpyAV	CCTTC	2 cut(s)	197, 496
HpyCH4III	ACNGT	3 cut(s)	772, 818, 859
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	5 cut(s)	221, 360, 640, 713, 842
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 292, 423, 432, 488, 637
HpyF3I	CTNAG	2 cut(s)	287, 384
HpySE526I	ACGT	1 cut(s)	680
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	4 cut(s)	364, 605, 667, 850
HspAI	GCGC	6 cut(s)	270, 295, 402, 424, 435, 629
KasI	GGCGCC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
LguI	GCTCTTC	1 cut(s)	574
LmnI	GCTCC	1 cut(s)	431
LweI	GCATC	1 cut(s)	348
MaeII	ACGT	1 cut(s)	680
MalI	GATC	6 cut(s)	131, 378, 389, 453, 825, 833
MbiI	CCGCTC	2 cut(s)	336, 647
MboI	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
MboII	GAAGA	8 cut(s)	103, 132, 286, 497, 553, 588, 591, 648
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	742
MluCI	AATT	4 cut(s)	8, 74, 523, 652
Mly113I	GGCGCC	1 cut(s)	435
MlyI	GAGTC	3 cut(s)	338, 602, 621
MmeI	TCCRAC	3 cut(s)	13, 303, 807
MroXI	GAANNNNTTC	1 cut(s)	696
MspI	CCGG	1 cut(s)	181
MvnI	CGCG	5 cut(s)	215, 272, 295, 297, 450
MwoI	GCNNNNNNNGC	6 cut(s)	194, 292, 423, 432, 488, 637
NarI	GGCGCC	1 cut(s)	435
NdeII	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
NlaIII	CATG	4 cut(s)	364, 605, 667, 850
NlaIV	GGNNCC	3 cut(s)	436, 533, 815
NspI	RCATGY	2 cut(s)	364, 667
PaeI	GCATGC	1 cut(s)	667
PaeR7I	CTCGAG	2 cut(s)	305, 331
PciSI	GCTCTTC	1 cut(s)	574
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	3 cut(s)	167, 207, 494
PkrI	GCNGC	2 cut(s)	338, 813
PleI	GAGTC	3 cut(s)	338, 601, 620
PluTI	GGCGCC	1 cut(s)	438
PpsI	GAGTC	3 cut(s)	338, 601, 620
PspN4I	GGNNCC	3 cut(s)	436, 533, 815
PspPI	GGNCC	2 cut(s)	183, 412
PspXI	VCTCGAGB	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	2 cut(s)	329, 792
RsaNI	GTAC	2 cut(s)	328, 791
SapI	GCTCTTC	1 cut(s)	574
SatI	GCNGC	2 cut(s)	337, 812
Sau3AI	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
Sau96I	GGNCC	2 cut(s)	183, 412
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	3 cut(s)	338, 602, 621
SduI	GDGCHC	1 cut(s)	742
SetI	ASST	8 cut(s)	282, 323, 357, 586, 683, 697, 801, 887
SfaNI	GCATC	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	436
Sfr274I	CTCGAG	2 cut(s)	305, 331
SinI	GGWCC	1 cut(s)	412
SlaI	CTCGAG	2 cut(s)	305, 331
SmlI	CTYRAG	2 cut(s)	305, 331
SmoI	CTYRAG	2 cut(s)	305, 331
SphI	GCATGC	1 cut(s)	667
Sse9I	AATT	4 cut(s)	8, 74, 523, 652
SspDI	GGCGCC	1 cut(s)	434
TaaI	ACNGT	3 cut(s)	772, 818, 859
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	5 cut(s)	306, 332, 342, 756, 804
TaqII	GACCGA	1 cut(s)	673
TasI	AATT	4 cut(s)	8, 74, 523, 652
TatI	WGTACW	2 cut(s)	327, 790
TauI	GCSGC	2 cut(s)	339, 814
TfiI	GAWTC	3 cut(s)	167, 207, 494
TscAI	CASTG	2 cut(s)	777, 833
TspDTI	ATGAA	3 cut(s)	67, 560, 564
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	2 cut(s)	777, 833
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	2 cut(s)	364, 667
XhoI	CTCGAG	2 cut(s)	305, 331
XmnI	GAANNNNTTC	1 cut(s)	696
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.