Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007710

Physical Location & Seq

Genomic Coordinates Forward (+)

41148113 .. 41151334

Gene Structure 3222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32330

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTGTGAATTTACAGCGTGGCGTAATGGTGTTGGATGGTTGATGTGTCCTCCTGTCTTTGCTACATTTTCCCAATTCATTCTACCATTGAAGAGTTCTACAAAGCAAGGCTCTACCCAGTCCCTCCTGATCCATCACTCTTCTTTCACTCTTCAACCGCCCTCGGAATCTCTCCGTTTCCGGCTCACAGAACCAGCAACAGAAGGAATCGTCGCGGTTGCAATGGCGTCGGAAAGAGGAGGAGGGACGCTATCGGAGATATACCAGAGCGCGAAGAAGCTGTTGCTGAGAACGCGAGACGGCCTCGAGAGGCTGGAGAGGTTGGAGTACTCGAGCGGCATCGACTCCCCTGACCTTTGCATGTCCATCAGAAACGATCTTACTCAGATCCAATCTCTCTGCGCCGATATGGACCGCCTCTGGCGCTCCGTCGGCGCCAAGTCCCAACGCGATCTCTGGAAAAGAAAAGTGGAACAAGTAGCGGAAGAGGCCGAATCGTTGAAGGAGAGTTTGGATAAGTATAATTTGAGGAACCAGAGGAAGATGAAAGAAGCCAGAGAGAGGGCGGAGTTGCTCGGAAGAGCTAATGGAGAGTCTTCTCATGTTATTAGAGTCTTTGATGAGGAGGCACAAGCAATGCAGTCGGCTCGTAACTCTTCTCGCATGCTTCACGAAGCCACTTCCGTCGGGGAAGCTATACTTTCCAAATATGCAGGGCAAAGGGAACACATAAAGAGAGCACAACGAAAAGCACTCGATGTCCTGAACACAGTGGGTCTGTCCAACTCTGTACTGAAGCTTATCGAGAGGCGGCACCGTGTTGATCAGTGGATCAAGTATGCAGGCATGATTTTGACAGTCGTTATTGTGTTTTTCTTTTGGAGGTGGACACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002682 GO:0002791 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031347 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0048583 GO:0050708 GO:0050776 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0065007 GO:0070201 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080134 GO:0090087 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

298

Amino Acids

34.06

Weight (kDa)

9.57

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	207 - 271	2.7e-15	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36900 AT2G36900 AT2G36900 AT5G50440 AT5G50440
fragaria_vesca	FvH4_3g25040
malus_domestica	MD02G1195300.v1.1
prunus_persica	Prupe.2G153200_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1
pyrus_communis	pycom02g15910
rosa_chinensis	RchiOBHm_Chr5g0045181
rosa_laevigata	RLG00000034341
rosa_multiflora	Rmu_sc0001773.1_g000012
rosa_roxburghii	Rroxscaffold_1G00035850
rosa_rugosa	Rorug05G0221300 Rorug05G0221400
rosa_samantha	Rh5AG302800 Rh5BG311300 Rh5CG337300 Rh5DG321500
rosa_wichuraiana	Rw5G028100 Rw5G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	434, 813
AccBSI	CCGCTC	1 cut(s)	336
AccII	CGCG	4 cut(s)	215, 272, 295, 450
AciI	CCGC	7 cut(s)	158, 215, 336, 415, 482, 566, 811
AclWI	GGATC	3 cut(s)	124, 382, 839
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	815
AcyI	GRCGYC	2 cut(s)	227, 435
AfaI	GTAC	2 cut(s)	329, 792
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	3 cut(s)	91, 155, 502
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	4 cut(s)	280, 584, 695, 799
AluI	AGCT	4 cut(s)	280, 584, 695, 799
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	3 cut(s)	124, 382, 839
Ama87I	CYCGRG	2 cut(s)	305, 331
AoxI	GGCC	2 cut(s)	301, 489
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	4 cut(s)	272, 404, 426, 437
AspS9I	GGNCC	1 cut(s)	412
AvaI	CYCGRG	2 cut(s)	305, 331
AvaII	GGWCC	1 cut(s)	412
BanI	GGYRCC	2 cut(s)	434, 813
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	742
BccI	CCATC	3 cut(s)	30, 141, 374
BceAI	ACGGC	1 cut(s)	316
BcgI	CGANNNNNNTGC	6 cut(s)	210, 244, 624, 629, 658, 663
BclI	TGATCA	1 cut(s)	823
BcoDI	GTCTC	1 cut(s)	291
BfoI	RGCGCY	2 cut(s)	427, 438
BisI	GCNGC	2 cut(s)	337, 812
BlsI	GCNGC	2 cut(s)	338, 813
BmcAI	AGTACT	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	2 cut(s)	305, 331
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	3 cut(s)	436, 533, 815
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	588
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
BpmI	CTGGAG	1 cut(s)	335
BsaHI	GRCGYC	2 cut(s)	227, 435
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	2 cut(s)	228, 642
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	2 cut(s)	228, 642
BseMII	CTCAG	2 cut(s)	278, 398
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	3 cut(s)	252, 255, 638
Bsh1236I	CGCG	4 cut(s)	215, 272, 295, 450
BshFI	GGCC	2 cut(s)	303, 491
BshNI	GGYRCC	2 cut(s)	434, 813
BsiHKAI	GWGCWC	1 cut(s)	742
BsiHKCI	CYCGRG	2 cut(s)	305, 331
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	3 cut(s)	106, 259, 427
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	291
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	3 cut(s)	106, 259, 427
BsnI	GGCC	2 cut(s)	303, 491
BsoBI	CYCGRG	2 cut(s)	305, 331
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp143I	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
BspACI	CCGC	7 cut(s)	158, 215, 336, 415, 482, 566, 811
BspANI	GGCC	2 cut(s)	303, 491
BspCNI	CTCAG	2 cut(s)	279, 397
BspFNI	CGCG	4 cut(s)	215, 272, 295, 450
BspLI	GGNNCC	3 cut(s)	436, 533, 815
BspPI	GGATC	3 cut(s)	124, 382, 839
BspQI	GCTCTTC	1 cut(s)	574
BspT107I	GGYRCC	2 cut(s)	434, 813
BsrBI	CCGCTC	1 cut(s)	336
BsrDI	GCAATG	2 cut(s)	228, 642
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
BssNI	GRCGYC	2 cut(s)	227, 435
Bst4CI	ACNGT	3 cut(s)	772, 818, 859
Bst6I	CTCTTC	6 cut(s)	86, 145, 156, 480, 574, 661
BstACI	GRCGYC	2 cut(s)	227, 435
BstC8I	GCNNGC	2 cut(s)	665, 844
BstDEI	CTNAG	2 cut(s)	287, 384
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	4 cut(s)	215, 272, 295, 450
BstH2I	RGCGCY	2 cut(s)	427, 438
BstHHI	GCGC	4 cut(s)	272, 404, 426, 437
BstKTI	GATC	6 cut(s)	132, 379, 390, 454, 826, 834
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	292, 423, 432, 488
BstNSI	RCATGY	2 cut(s)	364, 667
BstUI	CGCG	4 cut(s)	215, 272, 295, 450
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	303, 491
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	2 cut(s)	777, 833
Cac8I	GCNNGC	2 cut(s)	665, 844
CfoI	GCGC	4 cut(s)	272, 404, 426, 437
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	2 cut(s)	216, 256
Csp6I	GTAC	2 cut(s)	328, 791
CviAII	CATG	4 cut(s)	361, 602, 664, 847
CviQI	GTAC	2 cut(s)	328, 791
DdeI	CTNAG	2 cut(s)	287, 384
DinI	GGCGCC	1 cut(s)	436
DpnI	GATC	6 cut(s)	131, 378, 389, 453, 825, 833
DpnII	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
Eam1104I	CTCTTC	6 cut(s)	86, 145, 156, 480, 574, 661
EarI	CTCTTC	6 cut(s)	86, 145, 156, 480, 574, 661
EciI	GGCGGA	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	815
Eco88I	CYCGRG	2 cut(s)	305, 331
EgeI	GGCGCC	1 cut(s)	436
EheI	GGCGCC	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	4 cut(s)	364, 605, 667, 850
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	3 cut(s)	106, 259, 427
FatI	CATG	4 cut(s)	360, 601, 663, 846
FbaI	TGATCA	1 cut(s)	823
Fnu4HI	GCNGC	2 cut(s)	337, 812
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	337, 812
GlaI	GCGC	4 cut(s)	271, 403, 425, 436
GluI	GCNGC	2 cut(s)	337, 812
GsuI	CTGGAG	1 cut(s)	335
HaeII	RGCGCY	2 cut(s)	427, 438
HaeIII	GGCC	2 cut(s)	303, 491
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	2 cut(s)	216, 256
HhaI	GCGC	4 cut(s)	272, 404, 426, 437
Hin1I	GRCGYC	2 cut(s)	227, 435
Hin1II	CATG	4 cut(s)	364, 605, 667, 850
Hin6I	GCGC	4 cut(s)	270, 402, 424, 435
HinP1I	GCGC	4 cut(s)	270, 402, 424, 435
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	6 cut(s)	167, 207, 344, 494, 593, 612
HpaII	CCGG	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	888
Hpy188I	TCNGA	6 cut(s)	166, 232, 256, 371, 387, 578
Hpy188III	TCNNGA	6 cut(s)	127, 307, 457, 671, 763, 805
Hpy8I	GTNNAC	1 cut(s)	888
Hpy99I	CGWCG	4 cut(s)	215, 232, 434, 689
HpyAV	CCTTC	2 cut(s)	197, 496
HpyCH4III	ACNGT	3 cut(s)	772, 818, 859
HpyCH4V	TGCA	5 cut(s)	221, 360, 640, 713, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	292, 423, 432, 488
HpyF3I	CTNAG	2 cut(s)	287, 384
Hsp92I	GRCGYC	2 cut(s)	227, 435
Hsp92II	CATG	4 cut(s)	364, 605, 667, 850
HspAI	GCGC	4 cut(s)	270, 402, 424, 435
KasI	GGCGCC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
LguI	GCTCTTC	1 cut(s)	574
LmnI	GCTCC	1 cut(s)	431
LweI	GCATC	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	6 cut(s)	131, 378, 389, 453, 825, 833
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
MboII	GAAGA	9 cut(s)	103, 132, 143, 286, 497, 553, 588, 591, 648
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	742
MluCI	AATT	3 cut(s)	8, 74, 523
Mly113I	GGCGCC	1 cut(s)	435
MlyI	GAGTC	3 cut(s)	338, 602, 621
MmeI	TCCRAC	4 cut(s)	13, 210, 303, 807
MspI	CCGG	1 cut(s)	181
MvnI	CGCG	4 cut(s)	215, 272, 295, 450
MwoI	GCNNNNNNNGC	4 cut(s)	292, 423, 432, 488
NarI	GGCGCC	1 cut(s)	435
NdeII	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
NlaIII	CATG	4 cut(s)	364, 605, 667, 850
NlaIV	GGNNCC	3 cut(s)	436, 533, 815
NspI	RCATGY	2 cut(s)	364, 667
PaeI	GCATGC	1 cut(s)	667
PaeR7I	CTCGAG	2 cut(s)	305, 331
PciSI	GCTCTTC	1 cut(s)	574
PfeI	GAWTC	3 cut(s)	167, 207, 494
PkrI	GCNGC	2 cut(s)	338, 813
PleI	GAGTC	3 cut(s)	338, 601, 620
PluTI	GGCGCC	1 cut(s)	438
PpsI	GAGTC	3 cut(s)	338, 601, 620
PspN4I	GGNNCC	3 cut(s)	436, 533, 815
PspPI	GGNCC	1 cut(s)	412
PspXI	VCTCGAGB	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	2 cut(s)	329, 792
RsaNI	GTAC	2 cut(s)	328, 791
SapI	GCTCTTC	1 cut(s)	574
SatI	GCNGC	2 cut(s)	337, 812
Sau3AI	GATC	6 cut(s)	129, 376, 387, 451, 823, 831
Sau96I	GGNCC	1 cut(s)	412
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	3 cut(s)	338, 602, 621
SduI	GDGCHC	1 cut(s)	742
SetI	ASST	7 cut(s)	282, 323, 357, 586, 697, 801, 887
SfaNI	GCATC	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	436
Sfr274I	CTCGAG	2 cut(s)	305, 331
SinI	GGWCC	1 cut(s)	412
SlaI	CTCGAG	2 cut(s)	305, 331
SmlI	CTYRAG	2 cut(s)	305, 331
SmoI	CTYRAG	2 cut(s)	305, 331
SphI	GCATGC	1 cut(s)	667
Sse9I	AATT	3 cut(s)	8, 74, 523
SsiI	CCGC	7 cut(s)	158, 215, 336, 415, 482, 566, 811
SspDI	GGCGCC	1 cut(s)	434
TaaI	ACNGT	3 cut(s)	772, 818, 859
TaqI	TCGA	5 cut(s)	306, 332, 342, 756, 804
TasI	AATT	3 cut(s)	8, 74, 523
TatI	WGTACW	2 cut(s)	327, 790
TauI	GCSGC	2 cut(s)	339, 814
TfiI	GAWTC	3 cut(s)	167, 207, 494
TscAI	CASTG	2 cut(s)	777, 833
TspDTI	ATGAA	2 cut(s)	67, 560
TspGWI	ACGGA	3 cut(s)	164, 418, 673
TspRI	CASTG	2 cut(s)	777, 833
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	2 cut(s)	364, 667
XhoI	CTCGAG	2 cut(s)	305, 331
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.