Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007710

Physical Location & Seq

Genomic Coordinates Forward (+)

18100452 .. 18103757

Gene Structure 3306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCGGTGGAAAGAGGAGGAGGAGGGACGCTATCGGAGATATACCAGAGCGCGAAGAAGCTCCTGCTCCGAACGCGAGACGGGCTCGAAAGGCTGGAGAGATTGGAGTACTCGAGCGGCATCGACTCGCCGGACCTTTCCATGTCCATCAGAAACGACCTCTCTCAGATCCAGTCTCTCTGCGCCGATATGGACCGCCTCTGGCGCTCTGTCGCCGCCAAGTCCCAGCGCGATCTCTGGAAACGAAAAGTGGAGCAAGTAGCGGAGGAGACTGAGTCGTTGAAGGAGAGTTTGGATAAGTATAGTTTGAGGAACCAGAGGAAGATGAATGAGGCCAGAGAGAGGGCGGAGTTGCTCGGAAGAGCTAATGGAGAGTCTTCTCATGTTATTAGAGTGTTTGATGAGGAGGCGCAAGCAATGCAGTCGGCTCGCAATTCTTCGCGCATGCTTCATGAGGCTACGTCGGTAGGGGAAGCTATTCTTTCCAAATATGCAGGGCAAAGGGAACACATAAAGAGAGCTCAACGGAAAGCACTCGATGTCCTGAACACATTGGGTCTGTCCAACTCTGTACTGAAGCTTATCGAGAGACGGCACCGTGGTGATCAGTGGATCAAATATGCAGGCATGATTTTGACAGTCGTTGTTGTGTTTTTCTTTTGGAGGTGGACATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002682 GO:0002791 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031347 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0048583 GO:0050708 GO:0050776 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0065007 GO:0070201 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080134 GO:0090087 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

226

Amino Acids

25.93

Weight (kDa)

9.6

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	134 - 198	1e-15	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36900 AT2G36900 AT2G36900 AT5G50440 AT5G50440
fragaria_vesca	FvH4_3g25040
malus_domestica	MD02G1195300.v1.1
prunus_persica	Prupe.2G153200_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1
pyrus_communis	pycom02g15910
rosa_chinensis	RchiOBHm_Chr5g0045181
rosa_laevigata	RLG00000034341
rosa_multiflora	Rmu_sc0001773.1_g000012
rosa_roxburghii	Rroxscaffold_1G00035850
rosa_rugosa	Rorug05G0221300 Rorug05G0221400
rosa_samantha	Rh5AG302800 Rh5BG311300 Rh5CG337300 Rh5DG321500
rosa_wichuraiana	Rw5G028100 Rw5G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	594
AccBSI	CCGCTC	1 cut(s)	117
AccII	CGCG	4 cut(s)	53, 76, 231, 442
AciI	CCGC	6 cut(s)	5, 117, 196, 216, 263, 347
AclWI	GGATC	2 cut(s)	163, 620
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	2 cut(s)	110, 573
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AleI	CACNNNNGTG	1 cut(s)	600
AluBI	AGCT	5 cut(s)	61, 365, 476, 521, 580
AluI	AGCT	5 cut(s)	61, 365, 476, 521, 580
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	4 cut(s)	72, 180, 263, 583
AlwI	GGATC	2 cut(s)	163, 620
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	6 cut(s)	53, 185, 207, 231, 412, 444
AspS9I	GGNCC	2 cut(s)	133, 193
AsuHPI	GGTGA	1 cut(s)	614
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	133, 193
BanI	GGYRCC	1 cut(s)	594
BanII	GRGCYC	2 cut(s)	87, 523
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	523
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	608
BcgI	CGANNNNNNTGC	4 cut(s)	405, 410, 439, 444
BclI	TGATCA	1 cut(s)	604
BcoDI	GTCTC	4 cut(s)	72, 180, 263, 583
BfoI	RGCGCY	1 cut(s)	208
BisI	GCNGC	2 cut(s)	118, 216
BlsI	GCNGC	2 cut(s)	119, 217
BmcAI	AGTACT	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	133, 193
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	133, 193
BmiI	GGNNCC	2 cut(s)	314, 596
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpmI	CTGGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	598
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	179, 264
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	5 cut(s)	30, 33, 36, 281, 419
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	4 cut(s)	53, 76, 231, 442
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	594
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	2 cut(s)	40, 208
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	4 cut(s)	72, 180, 263, 583
BsmBI	CGTCTC	2 cut(s)	72, 583
BsmFI	GGGAC	2 cut(s)	40, 208
BsnI	GGCC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	87, 523
Bsp143I	GATC	4 cut(s)	168, 232, 604, 612
BspACI	CCGC	6 cut(s)	5, 117, 196, 216, 263, 347
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	2 cut(s)	178, 265
BspFNI	CGCG	4 cut(s)	53, 76, 231, 442
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	314, 596
BspPI	GGATC	2 cut(s)	163, 620
BspQI	GCTCTTC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	594
BsrBI	CCGCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	4 cut(s)	168, 232, 604, 612
Bst4CI	ACNGT	2 cut(s)	599, 640
Bst6I	CTCTTC	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstC8I	GCNNGC	4 cut(s)	414, 430, 446, 625
BstDEI	CTNAG	2 cut(s)	165, 273
BstDSI	CCRYGG	1 cut(s)	598
BstFNI	CGCG	4 cut(s)	53, 76, 231, 442
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	6 cut(s)	53, 185, 207, 231, 412, 444
BstKTI	GATC	4 cut(s)	171, 235, 607, 615
BstMAI	GTCTC	4 cut(s)	72, 180, 263, 583
BstMBI	GATC	4 cut(s)	168, 232, 604, 612
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 82, 91, 204, 418
BstNSI	RCATGY	1 cut(s)	448
BstUI	CGCG	4 cut(s)	53, 76, 231, 442
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	598
BtsIMutI	CAGTG	1 cut(s)	614
Cac8I	GCNNGC	4 cut(s)	414, 430, 446, 625
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	6 cut(s)	53, 185, 207, 231, 412, 444
Cfr13I	GGNCC	2 cut(s)	133, 193
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	109, 572
CviAII	CATG	6 cut(s)	142, 383, 445, 452, 628, 672
CviQI	GTAC	2 cut(s)	109, 572
DdeI	CTNAG	2 cut(s)	165, 273
DpnI	GATC	4 cut(s)	170, 234, 606, 614
DpnII	GATC	4 cut(s)	168, 232, 604, 612
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
EciI	GGCGGA	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	521
Eco24I	GRGCYC	2 cut(s)	87, 523
Eco47I	GGWCC	2 cut(s)	133, 193
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	596
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	521
EcoT38I	GRGCYC	2 cut(s)	87, 523
Esp3I	CGTCTC	2 cut(s)	72, 583
FaeI	CATG	6 cut(s)	145, 386, 448, 455, 631, 675
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	2 cut(s)	40, 208
FatI	CATG	6 cut(s)	141, 382, 444, 451, 627, 671
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	2 cut(s)	118, 216
FriOI	GRGCYC	2 cut(s)	87, 523
Fsp4HI	GCNGC	2 cut(s)	118, 216
GlaI	GCGC	6 cut(s)	52, 184, 206, 230, 411, 443
GluI	GCNGC	2 cut(s)	118, 216
GsaI	CCCAGC	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	6 cut(s)	53, 185, 207, 231, 412, 444
Hin1II	CATG	6 cut(s)	145, 386, 448, 455, 631, 675
Hin6I	GCGC	6 cut(s)	51, 183, 205, 229, 410, 442
HinP1I	GCGC	6 cut(s)	51, 183, 205, 229, 410, 442
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	3 cut(s)	125, 275, 374
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	5 cut(s)	37, 71, 152, 168, 359
Hpy188III	TCNNGA	4 cut(s)	238, 452, 544, 586
Hpy8I	GTNNAC	1 cut(s)	669
Hpy99I	CGWCG	1 cut(s)	466
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	599, 640
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	3 cut(s)	421, 494, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 82, 91, 204, 418
HpyF3I	CTNAG	2 cut(s)	165, 273
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	6 cut(s)	145, 386, 448, 455, 631, 675
HspAI	GCGC	6 cut(s)	51, 183, 205, 229, 410, 442
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	168, 232, 604, 612
LguI	GCTCTTC	1 cut(s)	355
LmnI	GCTCC	3 cut(s)	66, 72, 253
LweI	GCATC	1 cut(s)	129
MaeII	ACGT	1 cut(s)	461
MalI	GATC	4 cut(s)	170, 234, 606, 614
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	4 cut(s)	168, 232, 604, 612
MboII	GAAGA	5 cut(s)	67, 334, 369, 372, 429
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	87, 523
MluCI	AATT	1 cut(s)	433
MlyI	GAGTC	3 cut(s)	119, 284, 383
MmeI	TCCRAC	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	600
MspI	CCGG	1 cut(s)	131
MvnI	CGCG	4 cut(s)	53, 76, 231, 442
MwoI	GCNNNNNNNGC	5 cut(s)	73, 82, 91, 204, 418
NdeII	GATC	4 cut(s)	168, 232, 604, 612
NlaIII	CATG	6 cut(s)	145, 386, 448, 455, 631, 675
NlaIV	GGNNCC	2 cut(s)	314, 596
NspI	RCATGY	1 cut(s)	448
OliI	CACNNNNGTG	1 cut(s)	600
PaeI	GCATGC	1 cut(s)	448
PaeR7I	CTCGAG	1 cut(s)	112
PagI	TCATGA	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	477
PflFI	GACNNNGTC	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	119, 217
PleI	GAGTC	3 cut(s)	119, 283, 382
PpsI	GAGTC	3 cut(s)	119, 283, 382
Psp124BI	GAGCTC	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	314, 596
PspPI	GGNCC	2 cut(s)	133, 193
PspXI	VCTCGAGB	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	168
PsyI	GACNNNGTC	1 cut(s)	274
RsaI	GTAC	2 cut(s)	110, 573
RsaNI	GTAC	2 cut(s)	109, 572
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	523
SapI	GCTCTTC	1 cut(s)	355
SatI	GCNGC	2 cut(s)	118, 216
Sau3AI	GATC	4 cut(s)	168, 232, 604, 612
Sau96I	GGNCC	2 cut(s)	133, 193
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	3 cut(s)	119, 284, 383
SduI	GDGCHC	2 cut(s)	87, 523
SetI	ASST	9 cut(s)	63, 138, 162, 367, 464, 478, 523, 582, 668
SfaNI	GCATC	1 cut(s)	129
Sfr274I	CTCGAG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	133, 193
SlaI	CTCGAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SphI	GCATGC	1 cut(s)	448
Sse9I	AATT	1 cut(s)	433
SsiI	CCGC	6 cut(s)	5, 117, 196, 216, 263, 347
SstI	GAGCTC	1 cut(s)	523
TaaI	ACNGT	2 cut(s)	599, 640
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	5 cut(s)	87, 113, 123, 537, 585
TasI	AATT	1 cut(s)	433
TatI	WGTACW	2 cut(s)	108, 571
TauI	GCSGC	2 cut(s)	120, 218
TscAI	CASTG	1 cut(s)	614
TspDTI	ATGAA	2 cut(s)	341, 440
TspGWI	ACGGA	1 cut(s)	541
TspRI	CASTG	1 cut(s)	614
Tth111I	GACNNNGTC	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	133, 193
XceI	RCATGY	1 cut(s)	448
XhoI	CTCGAG	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	477
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.