Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007710

Physical Location & Seq

Genomic Coordinates Forward (+)

41025983 .. 41029192

Gene Structure 3210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG311300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCGTCGGAAAGAGGAGGAGGGACGCTATCGGAGATATACCAGAGCGCGAAGAAGCTGTTGCTGAGAACGCGAGACGGCCTCGAGAGGCTGGAGAGGTTGGAGTACTCGAGCGGCATCGACTCCCCTGACCTTTGCATGTCCATCAGAAACGATCTTACTCAGATCCAATCTCTCTGCGCCGATATGGACCGCCTCTGGCGCTCCGTCGGCGCCAAGTCCCAACGCGATCTCTGGAAAAGAAAAGTGGAACAAGTAGCGGAAGAGGCCGAATCGTTGAAGGAGAGTTTGGATAAGTATAATTTGAGGAACCAGAGGAAGATGAAAGAAGCCAGAGAGAGGGCGGAGTTGCTCGGAAGAGCTAATGGAGAGTCTTCTCATGTTATTAGAGTCTTTGATGAGGAGGCACAAGCAATGCAGTCGGCTCGTAACTCTTCTCGCATGCTTCACGAAGCCACTTCCGTCGGGGAAGCTATACTTTCCAAATATGCAGGGCAAAGGGAACACATAAAGAGAGCACAACGAAAAGCACTCGATGTCCTGAACACAGTGGGTCTGTCCAACTCTGTACTGAAGCTTATCGAGAGGCGGCACCGTGTTGATCAGTGGATCAAGTATGCAGGCATGATTTTGACAGTCGTTATTGTGTTTTTCTTTTGGAGGTGGACACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002682 GO:0002791 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031347 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0048583 GO:0050708 GO:0050776 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0065007 GO:0070201 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080134 GO:0090087 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

224

Amino Acids

25.9

Weight (kDa)

9.69

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	133 - 197	1.6e-15	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36900 AT2G36900 AT2G36900 AT5G50440 AT5G50440
fragaria_vesca	FvH4_3g25040
malus_domestica	MD02G1195300.v1.1
prunus_persica	Prupe.2G153200_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1
pyrus_communis	pycom02g15910
rosa_chinensis	RchiOBHm_Chr5g0045181
rosa_laevigata	RLG00000034341
rosa_multiflora	Rmu_sc0001773.1_g000012
rosa_roxburghii	Rroxscaffold_1G00035850
rosa_rugosa	Rorug05G0221300 Rorug05G0221400
rosa_samantha	Rh5AG302800 Rh5BG311300 Rh5CG337300 Rh5DG321500
rosa_wichuraiana	Rw5G028100 Rw5G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	212, 591
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	3 cut(s)	50, 73, 228
AciI	CCGC	5 cut(s)	114, 193, 260, 344, 589
AclWI	GGATC	2 cut(s)	160, 617
AcuI	CTGAAG	1 cut(s)	593
AcyI	GRCGYC	2 cut(s)	5, 213
AfaI	GTAC	2 cut(s)	107, 570
AfiI	CCNNNNNNNGG	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	4 cut(s)	58, 362, 473, 577
AluI	AGCT	4 cut(s)	58, 362, 473, 577
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	160, 617
Ama87I	CYCGRG	2 cut(s)	83, 109
AoxI	GGCC	2 cut(s)	79, 267
AspLEI	GCGC	4 cut(s)	50, 182, 204, 215
AspS9I	GGNCC	1 cut(s)	190
AvaI	CYCGRG	2 cut(s)	83, 109
AvaII	GGWCC	1 cut(s)	190
BanI	GGYRCC	2 cut(s)	212, 591
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	520
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	4 cut(s)	402, 407, 436, 441
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	69
BfoI	RGCGCY	2 cut(s)	205, 216
BisI	GCNGC	2 cut(s)	115, 590
BlsI	GCNGC	2 cut(s)	116, 591
BmcAI	AGTACT	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	190
BmeT110I	CYCGRG	2 cut(s)	83, 109
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	3 cut(s)	214, 311, 593
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	5, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	56, 176
BseRI	GAGGAG	3 cut(s)	30, 33, 416
Bsh1236I	CGCG	3 cut(s)	50, 73, 228
BshFI	GGCC	2 cut(s)	81, 269
BshNI	GGYRCC	2 cut(s)	212, 591
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	2 cut(s)	83, 109
BslFI	GGGAC	2 cut(s)	37, 205
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	37, 205
BsnI	GGCC	2 cut(s)	81, 269
BsoBI	CYCGRG	2 cut(s)	83, 109
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	5 cut(s)	154, 165, 229, 601, 609
BspACI	CCGC	5 cut(s)	114, 193, 260, 344, 589
BspANI	GGCC	2 cut(s)	81, 269
BspCNI	CTCAG	2 cut(s)	57, 175
BspFNI	CGCG	3 cut(s)	50, 73, 228
BspLI	GGNNCC	3 cut(s)	214, 311, 593
BspPI	GGATC	2 cut(s)	160, 617
BspQI	GCTCTTC	1 cut(s)	352
BspT107I	GGYRCC	2 cut(s)	212, 591
BsrBI	CCGCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	420
BssMI	GATC	5 cut(s)	154, 165, 229, 601, 609
BssNI	GRCGYC	2 cut(s)	5, 213
Bst4CI	ACNGT	3 cut(s)	550, 596, 637
Bst6I	CTCTTC	3 cut(s)	258, 352, 439
BstACI	GRCGYC	2 cut(s)	5, 213
BstC8I	GCNNGC	2 cut(s)	443, 622
BstDEI	CTNAG	2 cut(s)	65, 162
BstFNI	CGCG	3 cut(s)	50, 73, 228
BstH2I	RGCGCY	2 cut(s)	205, 216
BstHHI	GCGC	4 cut(s)	50, 182, 204, 215
BstKTI	GATC	5 cut(s)	157, 168, 232, 604, 612
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	5 cut(s)	154, 165, 229, 601, 609
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 201, 210, 266
BstNSI	RCATGY	2 cut(s)	142, 445
BstUI	CGCG	3 cut(s)	50, 73, 228
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	81, 269
BtsIMutI	CAGTG	2 cut(s)	555, 611
Cac8I	GCNNGC	2 cut(s)	443, 622
CfoI	GCGC	4 cut(s)	50, 182, 204, 215
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	106, 569
CviAII	CATG	4 cut(s)	139, 380, 442, 625
CviQI	GTAC	2 cut(s)	106, 569
DdeI	CTNAG	2 cut(s)	65, 162
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	5 cut(s)	156, 167, 231, 603, 611
DpnII	GATC	5 cut(s)	154, 165, 229, 601, 609
Eam1104I	CTCTTC	3 cut(s)	258, 352, 439
EarI	CTCTTC	3 cut(s)	258, 352, 439
EciI	GGCGGA	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	593
Eco88I	CYCGRG	2 cut(s)	83, 109
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	4 cut(s)	142, 383, 445, 628
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	2 cut(s)	37, 205
FatI	CATG	4 cut(s)	138, 379, 441, 624
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	2 cut(s)	115, 590
Fsp4HI	GCNGC	2 cut(s)	115, 590
GlaI	GCGC	4 cut(s)	49, 181, 203, 214
GluI	GCNGC	2 cut(s)	115, 590
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	2 cut(s)	205, 216
HaeIII	GGCC	2 cut(s)	81, 269
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	4 cut(s)	50, 182, 204, 215
Hin1I	GRCGYC	2 cut(s)	5, 213
Hin1II	CATG	4 cut(s)	142, 383, 445, 628
Hin6I	GCGC	4 cut(s)	48, 180, 202, 213
HinP1I	GCGC	4 cut(s)	48, 180, 202, 213
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	4 cut(s)	122, 272, 371, 390
Hpy166II	GTNNAC	1 cut(s)	666
Hpy188I	TCNGA	5 cut(s)	10, 34, 149, 165, 356
Hpy188III	TCNNGA	5 cut(s)	85, 235, 449, 541, 583
Hpy8I	GTNNAC	1 cut(s)	666
Hpy99I	CGWCG	3 cut(s)	10, 212, 467
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	3 cut(s)	550, 596, 637
HpyCH4V	TGCA	4 cut(s)	138, 418, 491, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 201, 210, 266
HpyF3I	CTNAG	2 cut(s)	65, 162
Hsp92I	GRCGYC	2 cut(s)	5, 213
Hsp92II	CATG	4 cut(s)	142, 383, 445, 628
HspAI	GCGC	4 cut(s)	48, 180, 202, 213
KasI	GGCGCC	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	5 cut(s)	154, 165, 229, 601, 609
LguI	GCTCTTC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	209
LweI	GCATC	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	5 cut(s)	156, 167, 231, 603, 611
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	5 cut(s)	154, 165, 229, 601, 609
MboII	GAAGA	6 cut(s)	64, 275, 331, 366, 369, 426
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	1 cut(s)	301
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	3 cut(s)	116, 380, 399
MmeI	TCCRAC	2 cut(s)	81, 585
MvnI	CGCG	3 cut(s)	50, 73, 228
MwoI	GCNNNNNNNGC	4 cut(s)	70, 201, 210, 266
NarI	GGCGCC	1 cut(s)	213
NdeII	GATC	5 cut(s)	154, 165, 229, 601, 609
NlaIII	CATG	4 cut(s)	142, 383, 445, 628
NlaIV	GGNNCC	3 cut(s)	214, 311, 593
NspI	RCATGY	2 cut(s)	142, 445
PaeI	GCATGC	1 cut(s)	445
PaeR7I	CTCGAG	2 cut(s)	83, 109
PciSI	GCTCTTC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	116, 591
PleI	GAGTC	3 cut(s)	116, 379, 398
PluTI	GGCGCC	1 cut(s)	216
PpsI	GAGTC	3 cut(s)	116, 379, 398
PspN4I	GGNNCC	3 cut(s)	214, 311, 593
PspPI	GGNCC	1 cut(s)	190
PspXI	VCTCGAGB	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	2 cut(s)	107, 570
RsaNI	GTAC	2 cut(s)	106, 569
SapI	GCTCTTC	1 cut(s)	352
SatI	GCNGC	2 cut(s)	115, 590
Sau3AI	GATC	5 cut(s)	154, 165, 229, 601, 609
Sau96I	GGNCC	1 cut(s)	190
ScaI	AGTACT	1 cut(s)	107
SchI	GAGTC	3 cut(s)	116, 380, 399
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	7 cut(s)	60, 101, 135, 364, 475, 579, 665
SfaNI	GCATC	1 cut(s)	126
SfoI	GGCGCC	1 cut(s)	214
Sfr274I	CTCGAG	2 cut(s)	83, 109
SinI	GGWCC	1 cut(s)	190
SlaI	CTCGAG	2 cut(s)	83, 109
SmlI	CTYRAG	2 cut(s)	83, 109
SmoI	CTYRAG	2 cut(s)	83, 109
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	5 cut(s)	114, 193, 260, 344, 589
SspDI	GGCGCC	1 cut(s)	212
TaaI	ACNGT	3 cut(s)	550, 596, 637
TaqI	TCGA	5 cut(s)	84, 110, 120, 534, 582
TasI	AATT	1 cut(s)	301
TatI	WGTACW	2 cut(s)	105, 568
TauI	GCSGC	2 cut(s)	117, 592
TfiI	GAWTC	1 cut(s)	272
TscAI	CASTG	2 cut(s)	555, 611
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	2 cut(s)	196, 451
TspRI	CASTG	2 cut(s)	555, 611
VpaK11BI	GGWCC	1 cut(s)	190
XceI	RCATGY	2 cut(s)	142, 445
XhoI	CTCGAG	2 cut(s)	83, 109
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.