Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007710

Physical Location & Seq

Genomic Coordinates Reverse (-)

20537426 .. 20538996

Gene Structure 1571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGTCTGGGACAGTGGGAGGGTTGTCTGAGGTATATAGTAGTGCAAAAAGGATTCTACTAAGAGCTCGGAATGGAATCGAGAAGTTGGAGAGGTTCGACTCTGATCCTACCGACCTCGCCTCCTCCGTGAAACGAGACATTACCGAGGTTCAATCTCTTTGTTCCAATATGGACGGTCTCTGGCGTTCGATCCCTGTCAAATCCCAGCGTGATCTTTGGAGAAGGAAGAGTGAACAAGTAGGAGAAGAGGCTGAGTATTTGAACCAAAGTCTAGAGAAGTACATGTGGAGGAATCAGAGGAAGATGTTGGAAGCTAAAGAGAGAGCGGATTTGTTAGGTAGAGGGAGTGGAGAAGGAGCTCACATTTTGCAAATATTTGATGAGGAGGCTCAAGGAATGAACTCTGTTAAGAATTCAAAGAGAATGCTTGAAGATTCGTTTCAAAGTGGAGTTGCTATTCTCTCTAAATATGCTGAACAAAGGGATCGTTTGAAGAGTGCGCAGAGGAAGGCTTTGGATGTTCTGAACACTGTTGGGCTCTCTAACTCTGTATTGAGGCTCATTGAGAGGCGTAATCGTGTTGATACCTGGATTAAATATGCGGGTATGATCGCAACGCTTGTCATATTGTATCTCTTCATAAGATGGACACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002682 GO:0002791 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031347 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0048583 GO:0050708 GO:0050776 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0065007 GO:0070201 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0080134 GO:0090087 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

V-SNARE_C

Protein Analysis

219

Amino Acids

25.1

Weight (kDa)

9.64

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	128 - 193	2.1e-19	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36900 AT2G36900 AT2G36900 AT5G50440 AT5G50440
fragaria_vesca	FvH4_3g25040
malus_domestica	MD02G1195300.v1.1
prunus_persica	Prupe.2G153200_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1 Prupe.7G022400_v2.0.a1
pyrus_communis	pycom02g15910
rosa_chinensis	RchiOBHm_Chr5g0045181
rosa_laevigata	RLG00000034341
rosa_multiflora	Rmu_sc0001773.1_g000012
rosa_roxburghii	Rroxscaffold_1G00035850
rosa_rugosa	Rorug05G0221300 Rorug05G0221400
rosa_samantha	Rh5AG302800 Rh5BG311300 Rh5CG337300 Rh5DG321500
rosa_wichuraiana	Rw5G028100 Rw5G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	504
AccBSI	CCGCTC	1 cut(s)	329
AciI	CCGC	2 cut(s)	329, 605
AclWI	GGATC	3 cut(s)	101, 187, 495
AcsI	RAATTY	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	6 cut(s)	155, 265, 420, 434, 446, 496
AjnI	CCWGG	1 cut(s)	590
AluBI	AGCT	3 cut(s)	68, 317, 362
AluI	AGCT	3 cut(s)	68, 317, 362
Alw21I	GWGCWC	2 cut(s)	70, 364
Alw26I	GTCTC	2 cut(s)	132, 185
AlwI	GGATC	3 cut(s)	101, 187, 495
ApoI	RAATTY	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	505
BanII	GRGCYC	3 cut(s)	70, 364, 543
Bbv12I	GWGCWC	2 cut(s)	70, 364
BccI	CCATC	1 cut(s)	642
BciT130I	CCWGG	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	132, 185
BfaI	CTAG	2 cut(s)	275, 658
Bme1390I	CCNGG	1 cut(s)	592
BmrFI	CCNGG	1 cut(s)	592
BpuEI	CTTGAG	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
BseBI	CCWGG	1 cut(s)	592
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	526
BseMII	CTCAG	2 cut(s)	21, 246
BseRI	GAGGAG	2 cut(s)	115, 401
BseYI	CCCAGC	1 cut(s)	207
BsiHKAI	GWGCWC	2 cut(s)	70, 364
BslFI	GGGAC	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	132, 185
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	432
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	70, 364, 543
Bsp143I	GATC	5 cut(s)	106, 192, 214, 487, 612
BspACI	CCGC	2 cut(s)	329, 605
BspCNI	CTCAG	2 cut(s)	22, 247
BspPI	GGATC	3 cut(s)	101, 187, 495
BspTNI	GGTCTC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	5 cut(s)	106, 192, 214, 487, 612
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	592
Bst4CI	ACNGT	3 cut(s)	16, 179, 535
Bst6I	CTCTTC	4 cut(s)	224, 243, 491, 644
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	3 cut(s)	30, 62, 255
BstF5I	GGATG	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	5 cut(s)	109, 195, 217, 490, 615
BstMAI	GTCTC	2 cut(s)	132, 185
BstMBI	GATC	5 cut(s)	106, 192, 214, 487, 612
BstNI	CCWGG	1 cut(s)	592
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	590
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	21, 531
CfoI	GCGC	1 cut(s)	505
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	8 cut(s)	68, 254, 317, 362, 392, 515, 541, 562
CviKI_1	RGCY	8 cut(s)	68, 254, 317, 362, 392, 515, 541, 562
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	3 cut(s)	30, 62, 255
DpnI	GATC	5 cut(s)	108, 194, 216, 489, 614
DpnII	GATC	5 cut(s)	106, 192, 214, 487, 612
Eam1104I	CTCTTC	4 cut(s)	224, 243, 491, 644
EarI	CTCTTC	4 cut(s)	224, 243, 491, 644
Ecl136II	GAGCTC	2 cut(s)	68, 362
Eco24I	GRGCYC	3 cut(s)	70, 364, 543
Eco31I	GGTCTC	1 cut(s)	185
Eco53kI	GAGCTC	2 cut(s)	68, 362
EcoICRI	GAGCTC	2 cut(s)	68, 362
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	590
EcoT38I	GRGCYC	3 cut(s)	70, 364, 543
FaeI	CATG	1 cut(s)	289
FaiI	YATR	9 cut(s)	37, 39, 173, 287, 474, 603, 611, 629, 644
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	1 cut(s)	285
FauI	CCCGC	1 cut(s)	598
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	3 cut(s)	70, 364, 543
FspBI	CTAG	2 cut(s)	275, 658
FspI	TGCGCA	1 cut(s)	504
GlaI	GCGC	1 cut(s)	504
GsaI	CCCAGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	5 cut(s)	55, 78, 101, 295, 437
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	5 cut(s)	31, 72, 106, 300, 528
Hpy188III	TCNNGA	2 cut(s)	82, 275
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	219, 350, 505
HpyCH4III	ACNGT	3 cut(s)	16, 179, 535
HpyCH4V	TGCA	2 cut(s)	47, 373
HpyF3I	CTNAG	3 cut(s)	30, 62, 255
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	1 cut(s)	503
Kzo9I	GATC	5 cut(s)	106, 192, 214, 487, 612
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	5 cut(s)	169, 210, 221, 577, 604
MaeI	CTAG	2 cut(s)	275, 658
MalI	GATC	5 cut(s)	108, 194, 216, 489, 614
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	5 cut(s)	106, 192, 214, 487, 612
MboII	GAAGA	6 cut(s)	241, 260, 316, 446, 508, 631
MhlI	GDGCHC	3 cut(s)	70, 364, 543
MluCI	AATT	1 cut(s)	415
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	2 cut(s)	69, 291
MseI	TTAA	2 cut(s)	411, 597
MspR9I	CCNGG	1 cut(s)	592
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	592
NdeII	GATC	5 cut(s)	106, 192, 214, 487, 612
NlaIII	CATG	1 cut(s)	289
NsbI	TGCGCA	1 cut(s)	504
NspI	RCATGY	1 cut(s)	289
PciI	ACATGT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	55, 78, 295, 437
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PscI	ACATGT	1 cut(s)	285
Psp124BI	GAGCTC	2 cut(s)	70, 364
Psp6I	CCWGG	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	590
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SacI	GAGCTC	2 cut(s)	70, 364
SaqAI	TTAA	2 cut(s)	411, 597
Sau3AI	GATC	5 cut(s)	106, 192, 214, 487, 612
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	592
SduI	GDGCHC	3 cut(s)	70, 364, 543
SetI	ASST	9 cut(s)	36, 70, 98, 120, 153, 319, 343, 364, 593
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	1 cut(s)	415
SsiI	CCGC	2 cut(s)	329, 605
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	2 cut(s)	275, 658
SstI	GAGCTC	2 cut(s)	70, 364
StyD4I	CCNGG	1 cut(s)	590
TaaI	ACNGT	3 cut(s)	16, 179, 535
TaqI	TCGA	3 cut(s)	81, 99, 191
TasI	AATT	1 cut(s)	415
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	4 cut(s)	55, 78, 295, 437
Tru1I	TTAA	2 cut(s)	411, 597
Tru9I	TTAA	2 cut(s)	411, 597
TscAI	CASTG	2 cut(s)	21, 538
TspDTI	ATGAA	2 cut(s)	416, 631
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	21, 538
XapI	RAATTY	1 cut(s)	415
XbaI	TCTAGA	1 cut(s)	274
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	2 cut(s)	275, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.