Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010307

Physical Location & Seq

Genomic Coordinates Reverse (-)

15751568 .. 15754061

Gene Structure 2494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGAATATATGGAGTGATGACAGGGAAAAAAGGAAAGAGTGGGTTTGGATCTGCTTCTACTGCTGAAGATGTTACTCAAGCCATTGATGCCAGTCATCTCACTGCCATCATCACAGGTGGAACAAGTGGGATTGGATTGGAGGCAGCTAGAGTGTTAGCAATGAGAGGAGCTCATGTCATCATTGCCGCAAGAAACCCAAAAGCTGCTAATGAGTCTAAAGAGATGATTCTTCAGATGAACCCTAATGCTCGCGTCGACTATCTCCAGATCGATGTCTCTTCCATCAAATCAGTCAGATCCTTCGTTGATCAGTTTCTTGCCCTTAATGTTCCTCTCAACATTCTCATAAACAATGCAGGTGTTATGTTTTGTCCTTTCAAGCTCACCGAAGATGGGATTGAATCACAATTCGCAACAAACCACATTGGTCATTTTCTGTTGACGAATCTGCTTCTGGACAAAATGAAAAGTACCGCAAGAGAAAGTGGAGTCCAAGGAAGGATTGTGAATCTGTCATCTATTGCTCATACTTATACTTACTCTGAAGGTATCAAGTTCCAAGGCATCAATGACCCTGCTGGATATTCGGAGAGAAGGGCTTATGGACAGTCCAAACTCTCAAACTTGTTGCACTCCAATGCACTCTCTCGTAGACTACAGGAAGAAGGTGTGAACATCACTATAAATTCGGTGCACCCTGGTCTTGTCACCACTAATCTCTTTCGCTACTCCGGTTTTAGCATGAAGGTCTTCAGGGCTATGACTTTCCTCTTTTGGAAAAATATACCTCAGGGAGCAGCAACAACATGCTACGTTGCACTTCATCCAGATCTCGAAGGCGTCACCGGAAAGTATTTCGGCGACTGTAACATCGTTGCTCCGAGCAAATTTGCTACCAACAATTCTCTCGCCGATAAACTTTGGGATTTCAGTGTCTTTCTCATCGATTCTATCTCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

321

Amino Acids

34.88

Weight (kDa)

9.02

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	35 - 182	2.6e-27	short chain dehydrogenase
KR	PF08659	35 - 123	1.2e-11	KR domain
adh_short_C2	PF13561	43 - 242	7.7e-17	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37540 AT2G37540 AT5G02540
fragaria_vesca	FvH4_6g14170 FvH4_6g14170
malus_domestica	MD04G1123600.v1.1 MD04G1124100.v1.1 MD12G1139500.v1.1
prunus_persica	Prupe.6G251300_v2.0.a1 Prupe.6G251300_v2.0.a1 Prupe.6G251400_v2.0.a1
pyrus_communis	pycom12g13380
rosa_chinensis	RchiOBHm_Chr3g0467121
rosa_laevigata	RLG00000024524
rosa_multiflora	Rmu_sc0018989.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413870
rosa_rugosa	Rorug03G0085500
rosa_samantha	Rh3BG154900 Rh3CG154700 Rh3DG155800
rosa_wichuraiana	Rw3G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	350
AccI	GTMKAC	2 cut(s)	258, 655
AccII	CGCG	1 cut(s)	255
AciI	CCGC	2 cut(s)	189, 477
AclWI	GGATC	2 cut(s)	58, 294
AcsI	RAATTY	2 cut(s)	688, 890
AcuI	CTGAAG	4 cut(s)	87, 218, 567, 739
AcyI	GRCGYC	1 cut(s)	843
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	382, 404
AjnI	CCWGG	1 cut(s)	700
AluBI	AGCT	4 cut(s)	149, 173, 206, 385
AluI	AGCT	4 cut(s)	149, 173, 206, 385
Alw21I	GWGCWC	2 cut(s)	175, 699
Alw26I	GTCTC	1 cut(s)	283
Alw44I	GTGCAC	1 cut(s)	695
AlwI	GGATC	2 cut(s)	58, 294
ApaLI	GTGCAC	1 cut(s)	695
ApeKI	GCWGC	3 cut(s)	146, 206, 800
ApoI	RAATTY	2 cut(s)	688, 890
Asp700I	GAANNNNTTC	1 cut(s)	752
AsuHPI	GGTGA	3 cut(s)	379, 703, 838
AxyI	CCTNAGG	1 cut(s)	792
BaeGI	GKGCMC	1 cut(s)	699
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	745
Bbv12I	GWGCWC	2 cut(s)	175, 699
BbvI	GCAGC	3 cut(s)	158, 193, 812
BccI	CCATC	3 cut(s)	116, 293, 389
BciT130I	CCWGG	1 cut(s)	702
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	659
BfuAI	ACCTGC	1 cut(s)	350
BglII	AGATCT	1 cut(s)	832
BisI	GCNGC	4 cut(s)	147, 189, 207, 801
BlsI	GCNGC	4 cut(s)	148, 190, 208, 802
Bme1390I	CCNGG	1 cut(s)	702
BmrFI	CCNGG	1 cut(s)	702
BmsI	GCATC	2 cut(s)	79, 576
BpiI	GAAGAC	1 cut(s)	745
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	63
Bsa29I	ATCGAT	2 cut(s)	273, 948
BsaHI	GRCGYC	1 cut(s)	843
BsaJI	CCNNGG	3 cut(s)	496, 562, 700
BsaWI	WCCGGW	2 cut(s)	734, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	93
Bse21I	CCTNAGG	1 cut(s)	792
Bse3DI	GCAATG	2 cut(s)	168, 183
BseBI	CCWGG	1 cut(s)	702
BseCI	ATCGAT	2 cut(s)	273, 948
BseDI	CCNNGG	3 cut(s)	496, 562, 700
BseGI	GGATG	1 cut(s)	826
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	2 cut(s)	168, 183
BseMII	CTCAG	1 cut(s)	806
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	3 cut(s)	158, 193, 812
Bsh1236I	CGCG	1 cut(s)	255
BshVI	ATCGAT	2 cut(s)	273, 948
BsiHKAI	GWGCWC	2 cut(s)	175, 699
BsiSI	CCGG	2 cut(s)	735, 849
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	175, 699
Bsp143I	GATC	5 cut(s)	50, 270, 299, 310, 832
BspACI	CCGC	2 cut(s)	189, 477
BspCNI	CTCAG	1 cut(s)	805
BspDI	ATCGAT	2 cut(s)	273, 948
BspFNI	CGCG	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	58, 294
BsrDI	GCAATG	2 cut(s)	168, 183
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	496, 562, 700
BssMI	GATC	5 cut(s)	50, 270, 299, 310, 832
BssNI	GRCGYC	1 cut(s)	843
BssT1I	CCWWGG	2 cut(s)	496, 562
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	2 cut(s)	612, 869
Bst6I	CTCTTC	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	843
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	792
BstF5I	GGATG	1 cut(s)	826
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	5 cut(s)	53, 273, 302, 313, 835
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	5 cut(s)	50, 270, 299, 310, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 89
BstNI	CCWGG	1 cut(s)	702
BstNSI	RCATGY	1 cut(s)	813
BstSCI	CCNGG	1 cut(s)	700
BstSFI	CTRYAG	1 cut(s)	659
BstSLI	GKGCMC	1 cut(s)	699
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	158, 193, 812
BstV2I	GAAGAC	1 cut(s)	745
BstX2I	RGATCY	3 cut(s)	50, 299, 832
BstYI	RGATCY	3 cut(s)	50, 299, 832
Bsu15I	ATCGAT	2 cut(s)	273, 948
Bsu36I	CCTNAGG	1 cut(s)	792
BsuTUI	ATCGAT	2 cut(s)	273, 948
BtsCI	GGATG	1 cut(s)	826
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	102, 940
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	253
ClaI	ATCGAT	2 cut(s)	273, 948
CseI	GACGC	2 cut(s)	244, 832
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	3 cut(s)	176, 745, 810
CviJI	RGCY	7 cut(s)	83, 149, 173, 206, 385, 602, 761
CviKI_1	RGCY	7 cut(s)	83, 149, 173, 206, 385, 602, 761
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	1 cut(s)	792
DpnI	GATC	5 cut(s)	52, 272, 301, 312, 834
DpnII	GATC	5 cut(s)	50, 270, 299, 310, 832
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	496, 562
Eco24I	GRGCYC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	4 cut(s)	87, 218, 567, 739
Eco81I	CCTNAGG	1 cut(s)	792
EcoICRI	GAGCTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	700
EcoT14I	CCWWGG	2 cut(s)	496, 562
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	496, 562
FaeI	CATG	3 cut(s)	179, 748, 813
FatI	CATG	3 cut(s)	175, 744, 809
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	2 cut(s)	258, 655
Fnu4HI	GCNGC	4 cut(s)	147, 189, 207, 801
FokI	GGATG	1 cut(s)	813
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	4 cut(s)	147, 189, 207, 801
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	4 cut(s)	147, 189, 207, 801
GsuI	CTGGAG	1 cut(s)	251
HapII	CCGG	2 cut(s)	735, 849
HgaI	GACGC	2 cut(s)	244, 832
Hin1I	GRCGYC	1 cut(s)	843
Hin1II	CATG	3 cut(s)	179, 748, 813
HincII	GTYRAC	2 cut(s)	259, 444
HindII	GTYRAC	2 cut(s)	259, 444
HinfI	GANTC	7 cut(s)	215, 229, 404, 448, 492, 511, 950
HpaII	CCGG	2 cut(s)	735, 849
HphI	GGTGA	3 cut(s)	379, 703, 838
Hpy166II	GTNNAC	5 cut(s)	259, 444, 656, 676, 697
Hpy188I	TCNGA	5 cut(s)	237, 299, 547, 592, 885
Hpy188III	TCNNGA	4 cut(s)	268, 458, 830, 836
Hpy8I	GTNNAC	5 cut(s)	259, 444, 656, 676, 697
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	7 cut(s)	313, 495, 542, 591, 662, 742, 833
HpyCH4III	ACNGT	2 cut(s)	612, 869
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	5 cut(s)	359, 634, 644, 697, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 89
HpyF3I	CTNAG	1 cut(s)	792
HpySE526I	ACGT	1 cut(s)	816
Hsp92I	GRCGYC	1 cut(s)	843
Hsp92II	CATG	3 cut(s)	179, 748, 813
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	50, 270, 299, 310, 832
LmnI	GCTCC	3 cut(s)	170, 797, 886
Lsp1109I	GCAGC	3 cut(s)	158, 193, 812
LweI	GCATC	2 cut(s)	79, 576
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	4 cut(s)	73, 709, 844, 869
MalI	GATC	5 cut(s)	52, 272, 301, 312, 834
MboI	GATC	5 cut(s)	50, 270, 299, 310, 832
MboII	GAAGA	6 cut(s)	80, 224, 273, 404, 677, 745
MflI	RGATCY	3 cut(s)	50, 299, 832
MhlI	GDGCHC	2 cut(s)	175, 699
MluCI	AATT	4 cut(s)	410, 688, 890, 904
MlyI	GAGTC	2 cut(s)	224, 501
MnlI	CCTC	5 cut(s)	136, 161, 345, 782, 801
MroXI	GAANNNNTTC	1 cut(s)	752
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	639
MspI	CCGG	2 cut(s)	735, 849
MspR9I	CCNGG	1 cut(s)	702
MvaI	CCWGG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	62, 89
NdeII	GATC	5 cut(s)	50, 270, 299, 310, 832
NlaIII	CATG	3 cut(s)	179, 748, 813
NmuCI	GTSAC	2 cut(s)	709, 844
NspI	RCATGY	1 cut(s)	813
PaqCI	CACCTGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	5 cut(s)	229, 404, 448, 511, 950
PkrI	GCNGC	4 cut(s)	148, 190, 208, 802
PleI	GAGTC	2 cut(s)	223, 500
PpsI	GAGTC	2 cut(s)	223, 500
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PsuI	RGATCY	3 cut(s)	50, 299, 832
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	639
SacI	GAGCTC	1 cut(s)	175
SalI	GTCGAC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	4 cut(s)	147, 189, 207, 801
Sau3AI	GATC	5 cut(s)	50, 270, 299, 310, 832
SchI	GAGTC	2 cut(s)	224, 501
ScrFI	CCNGG	1 cut(s)	702
SduI	GDGCHC	2 cut(s)	175, 699
SfaNI	GCATC	2 cut(s)	79, 576
SfcI	CTRYAG	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	4 cut(s)	410, 688, 890, 904
SsiI	CCGC	2 cut(s)	189, 477
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	700
StyI	CCWWGG	2 cut(s)	496, 562
TaaI	ACNGT	2 cut(s)	612, 869
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	4 cut(s)	258, 273, 837, 948
TasI	AATT	4 cut(s)	410, 688, 890, 904
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	5 cut(s)	229, 404, 448, 511, 950
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	2 cut(s)	109, 940
TseFI	GTSAC	2 cut(s)	709, 844
TseI	GCWGC	3 cut(s)	146, 206, 800
Tsp45I	GTSAC	2 cut(s)	709, 844
TspDTI	ATGAA	4 cut(s)	254, 482, 761, 815
TspRI	CASTG	2 cut(s)	109, 940
VneI	GTGCAC	1 cut(s)	695
XapI	RAATTY	2 cut(s)	688, 890
XceI	RCATGY	1 cut(s)	813
XmiI	GTMKAC	2 cut(s)	258, 655
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.