Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010307

Physical Location & Seq

Genomic Coordinates Forward (+)

8697607 .. 8702129

Gene Structure 4523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGTAATAGGCCTGGTGCAAGTGGGTTTGGATCATCTTCAACTGCTGAGCAAGTCACTAATGGGATTGATGCAAGAAACCTCACCGCCATTGTCACTGGCGGGGCGAGTGGGATTGGACTGGAGACGGCAAAGATCTTGGCTCTTCGAAGAGCCCATGTCATCATTGCTGCTAGAAACGTTGAGGCTGCAAACAAAGCGAAACAGCTCATTCTTGAAGAGAATGAGAAAGCACGAGTGGATGTGCTACAGCTTGACCTCTGCTCAGTCAAGTCTGTTAGAGCATTTGTTGATAGCTTTATTGCACTTGATCTTCCTCTCAACCTCTTAATAAACAACGCTGGTGTTATGTTCTGCCCTCACCAGCTTTCAGAAGATGGGATAGAGCTGCAGTTTGCTACCAATCATCTTGGTCATTTTCTCTTGACCAACCTCCTCCTGGAGAAAATGAAGAACACGGCTAAAACCACCGGCATTGAAGGCAGAATTGTGAACCTGTCATCGATTGCTCACGTACACACCTACAACAATGGGATTCGATTTGAAAGGATCAATGATCGAAGTGGTTACTCGGACAAAAGAGCATATGGCCAATCCAAACTAGCCAACATACTCCATGCTAATGAGCTCTCTCGTAGGTTGCAGGAAGAAGGTGTGAACATCACAGTCAACTCAGTCCACCCAGGAATAATAATGACACCTCTCATGAGGCACTCTGCTTTTCTAATGAAAACTTTGAGGTTTTTCACCTTCTGCATTTGGAAGAATGTTCCTCAGGGAGCAGCCACAACATGCTTTGTAGCACTGCATCCAAAAATGAAGGGCGTGACCGGAAAATACTATGTGGACTGCAACGAGATGAAGCCGAGCTCCTATGCTAGAAATGAGAAGTTGGCGAAAAGACTGTGGGACTTCAGCAACAAATTGATTGATGGAGCTTCTGTTAAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

318

Amino Acids

34.82

Weight (kDa)

9.49

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	29 - 176	2.2e-24	short chain dehydrogenase
KR	PF08659	29 - 117	4.9e-07	KR domain
adh_short_C2	PF13561	36 - 279	1.1e-16	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37540 AT2G37540 AT5G02540
fragaria_vesca	FvH4_6g14170 FvH4_6g14170
malus_domestica	MD04G1123600.v1.1 MD04G1124100.v1.1 MD12G1139500.v1.1
prunus_persica	Prupe.6G251300_v2.0.a1 Prupe.6G251300_v2.0.a1 Prupe.6G251400_v2.0.a1
pyrus_communis	pycom12g13380
rosa_chinensis	RchiOBHm_Chr3g0467121
rosa_laevigata	RLG00000024524
rosa_multiflora	Rmu_sc0018989.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413870
rosa_rugosa	Rorug03G0085500
rosa_samantha	Rh3BG154900 Rh3CG154700 Rh3DG155800
rosa_wichuraiana	Rw3G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 102
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	2 cut(s)	40, 557
AcoI	YGGCCR	1 cut(s)	589
AcuI	CTGAAG	1 cut(s)	898
AfaI	GTAC	1 cut(s)	516
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	4 cut(s)	42, 218, 479, 545
AjnI	CCWGG	3 cut(s)	13, 438, 682
AluBI	AGCT	8 cut(s)	208, 253, 297, 367, 388, 628, 870, 938
AluI	AGCT	8 cut(s)	208, 253, 297, 367, 388, 628, 870, 938
Alw21I	GWGCWC	2 cut(s)	630, 872
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	40, 557
AoxI	GGCC	2 cut(s)	11, 589
ApeKI	GCWGC	4 cut(s)	170, 188, 388, 782
AsuHPI	GGTGA	3 cut(s)	76, 353, 739
AsuII	TTCGAA	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	774
BalI	TGGCCA	1 cut(s)	591
BanII	GRGCYC	3 cut(s)	157, 630, 872
BauI	CACGAG	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	630, 872
BbvI	GCAGC	4 cut(s)	157, 175, 375, 794
BccI	CCATC	2 cut(s)	371, 926
BceAI	ACGGC	2 cut(s)	144, 474
BciT130I	CCWGG	3 cut(s)	15, 440, 684
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	3 cut(s)	174, 602, 879
BfmI	CTRYAG	2 cut(s)	248, 389
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	4 cut(s)	171, 189, 389, 783
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	4 cut(s)	172, 190, 390, 784
Bme1390I	CCNGG	3 cut(s)	15, 440, 684
BmrFI	CCNGG	3 cut(s)	15, 440, 684
BmsI	GCATC	2 cut(s)	61, 817
BpmI	CTGGAG	2 cut(s)	143, 461
Bpu1102I	GCTNAGC	1 cut(s)	48
Bpu14I	TTCGAA	1 cut(s)	148
Bsa29I	ATCGAT	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	682
BsaWI	WCCGGW	1 cut(s)	830
BsaXI	ACNNNNNCTCC	1 cut(s)	927
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	103, 126
Bse21I	CCTNAGG	1 cut(s)	774
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	15, 440, 684
BseCI	ATCGAT	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	682
BseGI	GGATG	2 cut(s)	247, 808
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	4 cut(s)	39, 279, 687, 788
BseNI	ACTGG	2 cut(s)	103, 126
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	4 cut(s)	157, 175, 375, 794
BshFI	GGCC	2 cut(s)	13, 591
BshVI	ATCGAT	1 cut(s)	503
BsiHKAI	GWGCWC	2 cut(s)	630, 872
BsiSI	CCGG	2 cut(s)	471, 831
BslFI	GGGAC	1 cut(s)	923
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	923
BsnI	GGCC	2 cut(s)	13, 591
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	3 cut(s)	157, 630, 872
Bsp143I	GATC	5 cut(s)	32, 135, 310, 549, 556
Bsp1720I	GCTNAGC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	87, 102
BspANI	GGCC	2 cut(s)	13, 591
BspCNI	CTCAG	4 cut(s)	40, 278, 686, 787
BspDI	ATCGAT	1 cut(s)	503
BspHI	TCATGA	1 cut(s)	705
BspMAI	CTGCAG	1 cut(s)	393
BspPI	GGATC	2 cut(s)	40, 557
BspQI	GCTCTTC	2 cut(s)	145, 150
BspT104I	TTCGAA	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	2 cut(s)	103, 126
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	682
BssMI	GATC	5 cut(s)	32, 135, 310, 549, 556
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	3 cut(s)	15, 440, 684
Bst4CI	ACNGT	2 cut(s)	667, 906
Bst6I	CTCTTC	3 cut(s)	145, 150, 213
BstBAI	YACGTR	1 cut(s)	514
BstBI	TTCGAA	1 cut(s)	148
BstDEI	CTNAG	4 cut(s)	48, 265, 673, 774
BstF5I	GGATG	2 cut(s)	247, 808
BstKTI	GATC	5 cut(s)	35, 138, 313, 552, 559
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	5 cut(s)	32, 135, 310, 549, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 480
BstNI	CCWGG	3 cut(s)	15, 440, 684
BstNSI	RCATGY	1 cut(s)	795
BstSCI	CCNGG	3 cut(s)	13, 438, 682
BstSFI	CTRYAG	2 cut(s)	248, 389
BstV1I	GCAGC	4 cut(s)	157, 175, 375, 794
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	503
Bsu36I	CCTNAGG	1 cut(s)	774
BsuRI	GGCC	2 cut(s)	13, 591
BsuTUI	ATCGAT	1 cut(s)	503
BtsCI	GGATG	2 cut(s)	247, 808
BtsI	GCAGTG	1 cut(s)	803
BtsIMutI	CAGTG	2 cut(s)	96, 803
CciI	TCATGA	1 cut(s)	705
Cfr10I	RCCGGY	1 cut(s)	470
ClaI	ATCGAT	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	515
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	4 cut(s)	158, 617, 706, 792
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	4 cut(s)	48, 265, 673, 774
DpnI	GATC	5 cut(s)	34, 137, 312, 551, 558
DpnII	GATC	5 cut(s)	32, 135, 310, 549, 556
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	3 cut(s)	145, 150, 213
EarI	CTCTTC	3 cut(s)	145, 150, 213
Ecl136II	GAGCTC	2 cut(s)	628, 870
Eco147I	AGGCCT	1 cut(s)	13
Eco24I	GRGCYC	3 cut(s)	157, 630, 872
Eco53kI	GAGCTC	2 cut(s)	628, 870
Eco57I	CTGAAG	1 cut(s)	898
Eco81I	CCTNAGG	1 cut(s)	774
EcoICRI	GAGCTC	2 cut(s)	628, 870
EcoRII	CCWGG	3 cut(s)	13, 438, 682
EcoT38I	GRGCYC	3 cut(s)	157, 630, 872
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	4 cut(s)	161, 620, 709, 795
FaqI	GGGAC	1 cut(s)	923
FatI	CATG	4 cut(s)	157, 616, 705, 791
FauI	CCCGC	1 cut(s)	95
FauNDI	CATATG	1 cut(s)	586
Fnu4HI	GCNGC	4 cut(s)	171, 189, 389, 783
FokI	GGATG	2 cut(s)	254, 795
FriOI	GRGCYC	3 cut(s)	157, 630, 872
Fsp4HI	GCNGC	4 cut(s)	171, 189, 389, 783
FspBI	CTAG	3 cut(s)	174, 602, 879
GluI	GCNGC	4 cut(s)	171, 189, 389, 783
GsuI	CTGGAG	2 cut(s)	143, 461
HaeIII	GGCC	2 cut(s)	13, 591
HapII	CCGG	2 cut(s)	471, 831
Hin1II	CATG	4 cut(s)	161, 620, 709, 795
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	1 cut(s)	535
HpaII	CCGG	2 cut(s)	471, 831
HphI	GGTGA	3 cut(s)	76, 353, 739
Hpy166II	GTNNAC	6 cut(s)	493, 517, 658, 670, 679, 847
Hpy188I	TCNGA	2 cut(s)	373, 574
Hpy188III	TCNNGA	3 cut(s)	215, 424, 706
Hpy8I	GTNNAC	6 cut(s)	493, 517, 658, 670, 679, 847
HpyAV	CCTTC	4 cut(s)	473, 644, 760, 814
HpyCH4III	ACNGT	2 cut(s)	667, 906
HpyCH4IV	ACGT	2 cut(s)	180, 513
HpyCH4V	TGCA	9 cut(s)	20, 74, 191, 305, 391, 643, 756, 808, 852
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 480
HpyF3I	CTNAG	4 cut(s)	48, 265, 673, 774
HpySE526I	ACGT	2 cut(s)	180, 513
Hsp92II	CATG	4 cut(s)	161, 620, 709, 795
Kzo9I	GATC	5 cut(s)	32, 135, 310, 549, 556
LguI	GCTCTTC	2 cut(s)	145, 150
LmnI	GCTCC	3 cut(s)	779, 875, 935
Lsp1109I	GCAGC	4 cut(s)	157, 175, 375, 794
LweI	GCATC	2 cut(s)	61, 817
MaeI	CTAG	3 cut(s)	174, 602, 879
MaeII	ACGT	2 cut(s)	180, 513
MaeIII	GTNAC	4 cut(s)	55, 94, 566, 826
MalI	GATC	5 cut(s)	34, 137, 312, 551, 558
MboI	GATC	5 cut(s)	32, 135, 310, 549, 556
MboII	GAAGA	9 cut(s)	30, 137, 162, 230, 305, 386, 463, 659, 775
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	3 cut(s)	157, 630, 872
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	2 cut(s)	486, 923
MluNI	TGGCCA	1 cut(s)	591
Mox20I	TGGCCA	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	591
MseI	TTAA	2 cut(s)	329, 945
MslI	CAYNNNNRTG	1 cut(s)	621
Msp20I	TGGCCA	1 cut(s)	591
MspI	CCGG	2 cut(s)	471, 831
MspR9I	CCNGG	3 cut(s)	15, 440, 684
MvaI	CCWGG	3 cut(s)	15, 440, 684
MwoI	GCNNNNNNNGC	2 cut(s)	197, 480
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	5 cut(s)	32, 135, 310, 549, 556
NlaIII	CATG	4 cut(s)	161, 620, 709, 795
NmeAIII	GCCGAG	1 cut(s)	891
NmuCI	GTSAC	3 cut(s)	55, 94, 826
NspI	RCATGY	1 cut(s)	795
NspV	TTCGAA	1 cut(s)	148
PagI	TCATGA	1 cut(s)	705
PceI	AGGCCT	1 cut(s)	13
PciSI	GCTCTTC	2 cut(s)	145, 150
PfeI	GAWTC	1 cut(s)	535
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	172, 190, 390, 784
Ppu21I	YACGTR	1 cut(s)	514
Psp124BI	GAGCTC	2 cut(s)	630, 872
Psp1406I	AACGTT	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	13, 438, 682
PspGI	CCWGG	3 cut(s)	13, 438, 682
PstI	CTGCAG	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	621
SacI	GAGCTC	2 cut(s)	630, 872
SapI	GCTCTTC	2 cut(s)	145, 150
SaqAI	TTAA	2 cut(s)	329, 945
SatI	GCNGC	4 cut(s)	171, 189, 389, 783
Sau3AI	GATC	5 cut(s)	32, 135, 310, 549, 556
ScrFI	CCNGG	3 cut(s)	15, 440, 684
SduI	GDGCHC	3 cut(s)	157, 630, 872
SfaNI	GCATC	2 cut(s)	61, 817
SfcI	CTRYAG	2 cut(s)	248, 389
SfuI	TTCGAA	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	621
Sse9I	AATT	2 cut(s)	486, 923
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	2 cut(s)	87, 102
SspMI	CTAG	3 cut(s)	174, 602, 879
SstI	GAGCTC	2 cut(s)	630, 872
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	3 cut(s)	13, 438, 682
TaaI	ACNGT	2 cut(s)	667, 906
TaiI	ACGT	2 cut(s)	183, 516
TaqI	TCGA	4 cut(s)	148, 503, 538, 559
TasI	AATT	2 cut(s)	486, 923
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	2 cut(s)	329, 945
Tru9I	TTAA	2 cut(s)	329, 945
TscAI	CASTG	2 cut(s)	103, 810
TseFI	GTSAC	3 cut(s)	55, 94, 826
TseI	GCWGC	4 cut(s)	170, 188, 388, 782
Tsp45I	GTSAC	3 cut(s)	55, 94, 826
TspDTI	ATGAA	4 cut(s)	464, 743, 833, 875
TspRI	CASTG	2 cut(s)	103, 810
XceI	RCATGY	1 cut(s)	795
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XspI	CTAG	3 cut(s)	174, 602, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.