Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010307

Physical Location & Seq

Genomic Coordinates Forward (+)

13200254 .. 13204668

Gene Structure 4415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG154900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGTTTCTTCTCATTGGTGACAGGAAGGCCTGGTGCAAGTGGGTTTGGATCAGCTTCAACTGCTGAGCAAGTCACTGAAGGGATTGATGCAAAAAACCTCACTGCCATTGTCACTGGCGGGGCGAGCGGGATTGGATTGGAGACGGCAAAGATCTTGGCGCTCCGAAGAGCCCATGTCATCATTGCTGCTAGAAACATTGGGGCTGCAAACAAAGCGAAACAGATCATTCTCGAAGAGAATGAGAAAGCTCGAGTGGATGTTCTAATACTTGACCTCTGCTCGGTCAAGTCTGTTAGAGCATTTGTTGATAGCTTCATAGCTCTTGATCTTCCTCTCAACCTCCTAATAAACAATGCTGGTGTTATGTTCTGCCCTCACCGGCTTTCAGAAGATGGAATAGAGATGCAGTTTGCAACCAATCATCTTGGTAACTATAATTTTCTCGACAAAATTATTTGTATCACATTTACACTTTACGTGTGTCTACGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

165

Amino Acids

17.68

Weight (kDa)

6.82

Isoelectric Point (pI)

28.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	35 - 148	3.1e-15	short chain dehydrogenase
KR	PF08659	35 - 123	1.5e-06	KR domain
adh_short_C2	PF13561	42 - 144	8.9e-06	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37540 AT2G37540 AT5G02540
fragaria_vesca	FvH4_6g14170 FvH4_6g14170
malus_domestica	MD04G1123600.v1.1 MD04G1124100.v1.1 MD12G1139500.v1.1
prunus_persica	Prupe.6G251300_v2.0.a1 Prupe.6G251300_v2.0.a1 Prupe.6G251400_v2.0.a1
pyrus_communis	pycom12g13380
rosa_chinensis	RchiOBHm_Chr3g0467121
rosa_laevigata	RLG00000024524
rosa_multiflora	Rmu_sc0018989.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413870
rosa_rugosa	Rorug03G0085500
rosa_samantha	Rh3BG154900 Rh3CG154700 Rh3DG155800
rosa_wichuraiana	Rw3G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	487
AciI	CCGC	2 cut(s)	120, 129
AclWI	GGATC	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	4 cut(s)	56, 251, 315, 323
AluI	AGCT	4 cut(s)	56, 251, 315, 323
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	188, 206
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	31, 371
AvaI	CYCGRG	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	175, 193
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	164
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	2 cut(s)	189, 207
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	2 cut(s)	190, 208
Bme1390I	CCNGG	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	79, 396
Bpu1102I	GCTNAGC	1 cut(s)	66
BsaAI	YACGTR	2 cut(s)	481, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	381
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	175, 193
BshFI	GGCC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	50, 153, 225, 328
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	120, 129
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	58
BspQI	GCTCTTC	1 cut(s)	163
BsrBI	CCGCTC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	381
BssMI	GATC	4 cut(s)	50, 153, 225, 328
Bst2UI	CCWGG	1 cut(s)	33
Bst6I	CTCTTC	2 cut(s)	163, 231
BstBAI	YACGTR	2 cut(s)	481, 491
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	4 cut(s)	53, 156, 228, 331
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	50, 153, 225, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 126, 215
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSNI	TACGTA	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	175, 193
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	3 cut(s)	75, 102, 114
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	8 cut(s)	31, 56, 173, 206, 251, 315, 323, 385
CviKI_1	RGCY	8 cut(s)	31, 56, 173, 206, 251, 315, 323, 385
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	4 cut(s)	52, 155, 227, 330
DpnII	GATC	4 cut(s)	50, 153, 225, 328
Eam1104I	CTCTTC	2 cut(s)	163, 231
EarI	CTCTTC	2 cut(s)	163, 231
Eco105I	TACGTA	1 cut(s)	491
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	1 cut(s)	179
FaiI	YATR	5 cut(s)	177, 320, 368, 438, 496
FatI	CATG	1 cut(s)	175
FauI	CCCGC	2 cut(s)	113, 122
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	189, 207
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	189, 207
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	189, 207
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	2 cut(s)	31, 371
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	2 cut(s)	167, 391
Hpy188III	TCNNGA	3 cut(s)	233, 326, 446
Hpy8I	GTNNAC	1 cut(s)	488
HpyAV	CCTTC	2 cut(s)	21, 74
HpyCH4IV	ACGT	2 cut(s)	480, 490
HpyCH4V	TGCA	5 cut(s)	38, 92, 209, 409, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 126, 215
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	2 cut(s)	480, 490
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	50, 153, 225, 328
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	6 cut(s)	9, 18, 45, 102, 345, 395
Lsp1109I	GCAGC	2 cut(s)	175, 193
LweI	GCATC	2 cut(s)	79, 396
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	2 cut(s)	480, 490
MaeIII	GTNAC	4 cut(s)	19, 73, 112, 431
MalI	GATC	4 cut(s)	52, 155, 227, 330
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	4 cut(s)	50, 153, 225, 328
MboII	GAAGA	4 cut(s)	180, 248, 323, 404
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	2 cut(s)	439, 453
MnlI	CCTC	5 cut(s)	110, 287, 345, 353, 387
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	62, 126, 215
NdeII	GATC	4 cut(s)	50, 153, 225, 328
NlaIII	CATG	1 cut(s)	179
NmuCI	GTSAC	3 cut(s)	19, 73, 112
PaeR7I	CTCGAG	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	190, 208
Ppu21I	YACGTR	2 cut(s)	481, 491
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspXI	VCTCGAGB	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
SapI	GCTCTTC	1 cut(s)	163
SatI	GCNGC	2 cut(s)	189, 207
Sau3AI	GATC	4 cut(s)	50, 153, 225, 328
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	9 cut(s)	58, 102, 253, 279, 317, 325, 345, 483, 493
SfaNI	GCATC	2 cut(s)	79, 396
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
SnaBI	TACGTA	1 cut(s)	491
Sse9I	AATT	2 cut(s)	439, 453
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	120, 129
SspMI	CTAG	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	31
TaiI	ACGT	2 cut(s)	483, 493
TaqI	TCGA	3 cut(s)	234, 253, 447
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	439, 453
TscAI	CASTG	3 cut(s)	82, 109, 121
TseFI	GTSAC	3 cut(s)	19, 73, 112
TseI	GCWGC	2 cut(s)	188, 206
Tsp45I	GTSAC	3 cut(s)	19, 73, 112
TspDTI	ATGAA	1 cut(s)	307
TspRI	CASTG	3 cut(s)	82, 109, 121
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.