Prupe.6G251400_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010307
Physical Location & Seq
Reverse (-)
24615250 .. 24618443
3194 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G251400.1

Sequence Viewer

Length: 969 bp
ATGGGTATCTTTGCATTGGTGACAGGAAGGCCAGGGCCTAGTGGGTTTGGATCAGCTTCCACTGCTGAGCAGGTCACTGATGGAGTTGATGCTAGCAACCTTACTGCTATTGTCACTGGTGGGGCAAGTGGGATTGGGTTGGAAACTGCAAGGGTCTTGGCACTTCGAGGAGCCCATGTCATCATTGCCTCCAGAAACGTAGAGGCTGCGAAGGAAGCAAAGCAGCTCATTCTTAAAGACAATCGAAGTGCTCGAGTTGATGTTCTAACACTTGACCTCTGCTCCATCAAGTCTGTTAGAGCATTTGTTGACAGCTTCAATGCTCTTGATCTTCCTCTCAACCTCTTAATAAACAATGCTGGTGTCATGTTCTGCCCCCACCGGCTTTCGGAAGATGGAATAGAATTGCAGTTTGCAACCAATCATCTTGGTCATTTTCTCTTAACAAACCTTCTCCTTGAGAAAATGAAGAACACTGCTAGAACTACTGGTGTGGAAGGCAGAATTGTGAATCTGTCATCAATTGCTCATGTACACACTTATAAAGATGGGATTTATTTCGATAAGATTAACGATCGAATGAGTTACAATGACAAAAGGGCGTATGGGCAATCCAAATTAGCAAACATACTTCATGCCAACGAGCTCTCTCGTCGATTGCAGGAAGAAGGTGTGAACATAACAGTCAATTCAGTCCACCCAGGATTGATCATGACACCTCTCATGAGGCATTCTGCTCTTTTGATGAGAACTTTGAAGTTGTTCACCTTTTGGTTTTGGAAGAATGTCCCTCAGGGAGCAGCCACAACATTGTATGTAGCCCTGCATCCAAAAGTGAAAGGTGTGACTGGAAAATACTATGTGGACTGTAACGAGATGAAACCCAGCTCATATGCTAGAGATGAAAACTTAGCCAAAAAGCTCTGGGACTTCAGCAACAAGTTGATTGATGGAGCTTCCAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

323

Amino Acids

35.3

Weight (kDa)

9.33

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
Acc36I ACCTGC 1 cut(s) 61
AclWI GGATC 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 916
AfaI GTAC 1 cut(s) 534
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 2 cut(s) 319, 757
AjnI CCWGG 2 cut(s) 31, 700
AluBI AGCT 8 cut(s) 56, 226, 315, 646, 888, 922, 956, 966
AluI AGCT 8 cut(s) 56, 226, 315, 646, 888, 922, 956, 966
Alw21I GWGCWC 2 cut(s) 253, 648
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 2 cut(s) 29, 35
ApeKI GCWGC 3 cut(s) 206, 223, 800
Asp700I GAANNNNTTC 1 cut(s) 761
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 31, 757
AsuNHI GCTAGC 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 252
AxyI CCTNAGG 1 cut(s) 792
BanII GRGCYC 2 cut(s) 175, 648
Bbv12I GWGCWC 2 cut(s) 253, 648
BbvI GCAGC 3 cut(s) 193, 235, 812
BccI CCATC 5 cut(s) 74, 293, 389, 542, 944
BciT130I CCWGG 2 cut(s) 33, 702
BclI TGATCA 1 cut(s) 708
BfaI CTAG 4 cut(s) 39, 93, 480, 897
BfuAI ACCTGC 1 cut(s) 61
BisI GCNGC 3 cut(s) 207, 224, 801
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 3 cut(s) 208, 225, 802
Bme1390I CCNGG 2 cut(s) 33, 702
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 2 cut(s) 33, 702
BmsI GCATC 2 cut(s) 79, 835
BmtI GCTAGC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 175
Bpu1102I GCTNAGC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 479
BsaJI CCNNGG 2 cut(s) 32, 700
BsaXI ACNNNNNCTCC 4 cut(s) 162, 192, 266, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 3 cut(s) 121, 493, 853
Bse21I CCTNAGG 1 cut(s) 792
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 33, 702
BseDI CCNNGG 2 cut(s) 32, 700
BseGI GGATG 1 cut(s) 826
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 57, 806
BseNI ACTGG 3 cut(s) 121, 493, 853
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 3 cut(s) 193, 235, 812
BseYI CCCAGC 1 cut(s) 884
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 2 cut(s) 31, 37
BsiEI CGRYCG 1 cut(s) 577
BsiHKAI GWGCWC 2 cut(s) 253, 648
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 2 cut(s) 773, 941
BslI CCNNNNNNNGG 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 773, 941
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 2 cut(s) 31, 37
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 3 cut(s) 175, 253, 648
Bsp1407I TGTACA 1 cut(s) 532
Bsp143I GATC 4 cut(s) 50, 328, 574, 708
Bsp1720I GCTNAGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 31, 37
BspCNI CTCAG 2 cut(s) 58, 805
BspHI TCATGA 2 cut(s) 711, 723
BspLI GGNNCC 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 61
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 381
BsrGI TGTACA 1 cut(s) 532
BsrI ACTGG 3 cut(s) 121, 493, 853
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 32, 700
BssMI GATC 4 cut(s) 50, 328, 574, 708
Bst2UI CCWGG 2 cut(s) 33, 702
Bst4CI ACNGT 2 cut(s) 685, 869
BstAUI TGTACA 1 cut(s) 532
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 3 cut(s) 66, 792, 910
BstF5I GGATG 1 cut(s) 826
BstKTI GATC 4 cut(s) 53, 331, 577, 711
BstMBI GATC 4 cut(s) 50, 328, 574, 708
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 2 cut(s) 62, 215
BstNI CCWGG 2 cut(s) 33, 702
BstSCI CCNGG 2 cut(s) 31, 700
BstV1I GCAGC 3 cut(s) 193, 235, 812
Bsu36I CCTNAGG 1 cut(s) 792
BsuRI GGCC 2 cut(s) 31, 37
BtsCI GGATG 1 cut(s) 826
BtsI GCAGTG 2 cut(s) 60, 474
BtsIMutI CAGTG 4 cut(s) 60, 75, 114, 474
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 94
CciI TCATGA 2 cut(s) 711, 723
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 533
CviAII CATG 6 cut(s) 176, 367, 530, 635, 712, 724
CviQI GTAC 1 cut(s) 533
DdeI CTNAG 3 cut(s) 66, 792, 910
DpnI GATC 4 cut(s) 52, 330, 576, 710
DpnII GATC 4 cut(s) 50, 328, 574, 708
Ecl136II GAGCTC 1 cut(s) 646
Eco24I GRGCYC 2 cut(s) 175, 648
Eco53kI GAGCTC 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 916
Eco81I CCTNAGG 1 cut(s) 792
Eco88I CYCGRG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 646
EcoO109I RGGNCCY 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 31, 700
EcoT38I GRGCYC 2 cut(s) 175, 648
FaeI CATG 6 cut(s) 179, 370, 533, 638, 715, 727
FaqI GGGAC 2 cut(s) 773, 941
FatI CATG 6 cut(s) 175, 366, 529, 634, 711, 723
FauNDI CATATG 1 cut(s) 892
FbaI TGATCA 1 cut(s) 708
Fnu4HI GCNGC 3 cut(s) 207, 224, 801
FokI GGATG 1 cut(s) 813
FriOI GRGCYC 2 cut(s) 175, 648
Fsp4HI GCNGC 3 cut(s) 207, 224, 801
FspBI CTAG 4 cut(s) 39, 93, 480, 897
GluI GCNGC 3 cut(s) 207, 224, 801
GsaI CCCAGC 1 cut(s) 888
GsuI CTGGAG 1 cut(s) 175
HaeIII GGCC 2 cut(s) 31, 37
HapII CCGG 1 cut(s) 382
Hin1II CATG 6 cut(s) 179, 370, 533, 638, 715, 727
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 1 cut(s) 511
HpaII CCGG 1 cut(s) 382
HphI GGTGA 2 cut(s) 31, 757
Hpy166II GTNNAC 6 cut(s) 310, 535, 676, 697, 765, 865
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 4 cut(s) 192, 326, 712, 724
Hpy8I GTNNAC 6 cut(s) 310, 535, 676, 697, 765, 865
Hpy99I CGWCG 1 cut(s) 657
HpyAV CCTTC 5 cut(s) 21, 205, 461, 491, 662
HpyCH4III ACNGT 2 cut(s) 685, 869
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 6 cut(s) 14, 149, 409, 416, 661, 826
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 215
HpyF3I CTNAG 3 cut(s) 66, 792, 910
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 6 cut(s) 179, 370, 533, 638, 715, 727
Ksp22I TGATCA 1 cut(s) 708
Kzo9I GATC 4 cut(s) 50, 328, 574, 708
LmnI GCTCC 4 cut(s) 170, 287, 797, 953
Lsp1109I GCAGC 3 cut(s) 193, 235, 812
LweI GCATC 2 cut(s) 79, 835
MaeI CTAG 4 cut(s) 39, 93, 480, 897
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 6 cut(s) 19, 73, 112, 584, 844, 869
MalI GATC 4 cut(s) 52, 330, 576, 710
MboI GATC 4 cut(s) 50, 328, 574, 708
MboII GAAGA 5 cut(s) 323, 404, 481, 677, 793
MfeI CAATTG 1 cut(s) 522
MhlI GDGCHC 3 cut(s) 175, 253, 648
MluCI AATT 5 cut(s) 404, 504, 522, 617, 688
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 9 cut(s) 161, 196, 199, 287, 345, 353, 720, 729, 801
MroXI GAANNNNTTC 1 cut(s) 761
MseI TTAA 4 cut(s) 234, 347, 443, 570
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 33, 702
MunI CAATTG 1 cut(s) 522
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 2 cut(s) 33, 702
MwoI GCNNNNNNNGC 2 cut(s) 62, 215
NdeI CATATG 1 cut(s) 892
NdeII GATC 4 cut(s) 50, 328, 574, 708
NheI GCTAGC 1 cut(s) 92
NlaIII CATG 6 cut(s) 179, 370, 533, 638, 715, 727
NlaIV GGNNCC 1 cut(s) 172
NmuCI GTSAC 4 cut(s) 19, 73, 112, 844
PaeR7I CTCGAG 1 cut(s) 252
PagI TCATGA 2 cut(s) 711, 723
PcsI WCGNNNNNNNCGW 1 cut(s) 250
PctI GAATGC 1 cut(s) 730
PdmI GAANNNNTTC 1 cut(s) 761
PfeI GAWTC 1 cut(s) 511
PkrI GCNGC 3 cut(s) 208, 225, 802
Ple19I CGATCG 1 cut(s) 577
PsiI TTATAA 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 31, 700
PspFI CCCAGC 1 cut(s) 884
PspGI CCWGG 2 cut(s) 31, 700
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 35
PspXI VCTCGAGB 1 cut(s) 252
PvuI CGATCG 1 cut(s) 577
RsaI GTAC 1 cut(s) 534
RsaNI GTAC 1 cut(s) 533
SacI GAGCTC 1 cut(s) 648
SaqAI TTAA 4 cut(s) 234, 347, 443, 570
SatI GCNGC 3 cut(s) 207, 224, 801
Sau3AI GATC 4 cut(s) 50, 328, 574, 708
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 33, 702
SduI GDGCHC 3 cut(s) 175, 253, 648
SfaNI GCATC 2 cut(s) 79, 835
Sfr274I CTCGAG 1 cut(s) 252
SlaI CTCGAG 1 cut(s) 252
SmlI CTYRAG 2 cut(s) 252, 458
SmoI CTYRAG 2 cut(s) 252, 458
Sse9I AATT 5 cut(s) 404, 504, 522, 617, 688
SspMI CTAG 4 cut(s) 39, 93, 480, 897
SstI GAGCTC 1 cut(s) 648
StyD4I CCNGG 2 cut(s) 31, 700
TaaI ACNGT 2 cut(s) 685, 869
TaiI ACGT 1 cut(s) 201
TaqI TCGA 6 cut(s) 166, 244, 253, 561, 577, 655
TasI AATT 5 cut(s) 404, 504, 522, 617, 688
TatI WGTACW 1 cut(s) 532
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 4 cut(s) 234, 347, 443, 570
Tru9I TTAA 4 cut(s) 234, 347, 443, 570
TscAI CASTG 4 cut(s) 67, 82, 121, 481
TseFI GTSAC 4 cut(s) 19, 73, 112, 844
TseI GCWGC 3 cut(s) 206, 223, 800
Tsp45I GTSAC 4 cut(s) 19, 73, 112, 844
TspDTI ATGAA 4 cut(s) 482, 623, 893, 918
TspRI CASTG 4 cut(s) 67, 82, 121, 481
XhoI CTCGAG 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 761
XspI CTAG 4 cut(s) 39, 93, 480, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.