Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010307

Physical Location & Seq

Genomic Coordinates Forward (+)

12948321 .. 12952839

Gene Structure 4519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG154700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGTTTCTTCTCATTGGTGACAGGAAGGCCTGGTGCAAGTGGGTTTGGATCAGCTTCAACTGCTGAGCAAGTCACTGAAGGGATTGATGCAAAAAACCTCACTGCCATTGTCACTGGCGGGGCGAGTGGGATTGGATTGGAGACAGCAAAGATCTTGGCGCTCCGAAGAGCCCATGTCATCATTGCTGCTAGAAACATTGAGGCTGCAAACAAAGCGAAACAGATCATTCTCGAAGAGAATGAGAAAGCTCGAGTGGATGTGCTAATACTTGACCTCTGCTCAGTCAAGTCTGTTAGAGCATTTGTTGACAGCTTCATTGCTCTCGATCTTCCTCTCAATCTCCTAATAAACAATGCTGGTGTTATGTTCTGCCCTCACCGGCTTTCAGAAGATGGAATAGAGATGCAGTTCGCAACCAATCATCTTGGTCATTTTCTCCTGACCAACCTCCTCCTTGAGAAAATGAAGCACACGGCTAAAACCACTGGCATCGAAGGCAGAATTGTGAACCTGTCGTCAATTGCTCATGTGCACACCTATGGCAATGGGATTCGATTTGATAGGATCAATGAACGAAGTGGTTACTCAGACAAAAGAGCATATGGCCAATCCAAACTAGCCAACATACTCCATGCTAATGAGCTCTCTCGTAGGTTGCAGGCAGAGGGAGTGAACATCACAGTCAATTCAGTCCACCCAGGAATAATAATGACACCTCTCATGAGGCACTCTGCTTTTTTAATGAGTATATCCCATTCAGAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

256

Amino Acids

27.71

Weight (kDa)

8.93

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	35 - 180	2.9e-23	short chain dehydrogenase
KR	PF08659	35 - 123	4.1e-06	KR domain
adh_short_C2	PF13561	42 - 244	1.3e-14	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37540 AT2G37540 AT5G02540
fragaria_vesca	FvH4_6g14170 FvH4_6g14170
malus_domestica	MD04G1123600.v1.1 MD04G1124100.v1.1 MD12G1139500.v1.1
prunus_persica	Prupe.6G251300_v2.0.a1 Prupe.6G251300_v2.0.a1 Prupe.6G251400_v2.0.a1
pyrus_communis	pycom12g13380
rosa_chinensis	RchiOBHm_Chr3g0467121
rosa_laevigata	RLG00000024524
rosa_multiflora	Rmu_sc0018989.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413870
rosa_rugosa	Rorug03G0085500
rosa_samantha	Rh3BG154900 Rh3CG154700 Rh3DG155800
rosa_wichuraiana	Rw3G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	58, 575
AcoI	YGGCCR	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	763
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	31, 700
AluBI	AGCT	4 cut(s)	56, 251, 315, 646
AluI	AGCT	4 cut(s)	56, 251, 315, 646
Alw21I	GWGCWC	2 cut(s)	537, 648
Alw26I	GTCTC	1 cut(s)	137
Alw44I	GTGCAC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	58, 575
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	2 cut(s)	29, 607
ApaLI	GTGCAC	1 cut(s)	533
ApeKI	GCWGC	2 cut(s)	188, 206
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	31, 371
AvaI	CYCGRG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	537
BalI	TGGCCA	1 cut(s)	609
BanII	GRGCYC	2 cut(s)	175, 648
Bbv12I	GWGCWC	2 cut(s)	537, 648
BbvI	GCAGC	2 cut(s)	175, 193
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	492
BciT130I	CCWGG	2 cut(s)	33, 702
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	192, 620
BfoI	RGCGCY	1 cut(s)	164
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	2 cut(s)	189, 207
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	2 cut(s)	190, 208
Bme1390I	CCNGG	2 cut(s)	33, 702
BmeT110I	CYCGRG	1 cut(s)	252
BmrFI	CCNGG	2 cut(s)	33, 702
BmsI	GCATC	3 cut(s)	79, 396, 501
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse118I	RCCGGY	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	121, 493
Bse3DI	GCAATG	3 cut(s)	183, 318, 553
BseBI	CCWGG	2 cut(s)	33, 702
BseDI	CCNNGG	1 cut(s)	700
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMI	GCAATG	3 cut(s)	183, 318, 553
BseMII	CTCAG	3 cut(s)	57, 297, 603
BseNI	ACTGG	2 cut(s)	121, 493
BseRI	GAGGAG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	2 cut(s)	175, 193
BshFI	GGCC	2 cut(s)	31, 609
BsiHKAI	GWGCWC	2 cut(s)	537, 648
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	31, 609
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	3 cut(s)	175, 537, 648
Bsp143I	GATC	5 cut(s)	50, 153, 225, 328, 567
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	2 cut(s)	31, 609
BspCNI	CTCAG	3 cut(s)	58, 296, 602
BspHI	TCATGA	1 cut(s)	723
BspPI	GGATC	2 cut(s)	58, 575
BspQI	GCTCTTC	1 cut(s)	163
BsrDI	GCAATG	3 cut(s)	183, 318, 553
BsrFI	RCCGGY	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	121, 493
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	700
BssMI	GATC	5 cut(s)	50, 153, 225, 328, 567
Bst2UI	CCWGG	2 cut(s)	33, 702
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	2 cut(s)	163, 231
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	3 cut(s)	66, 283, 589
BstF5I	GGATG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	5 cut(s)	53, 156, 228, 331, 570
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	5 cut(s)	50, 153, 225, 328, 567
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 215, 498
BstNI	CCWGG	2 cut(s)	33, 702
BstSCI	CCNGG	2 cut(s)	31, 700
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	175, 193
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	31, 609
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	4 cut(s)	75, 102, 114, 486
Cac8I	GCNNGC	1 cut(s)	663
CciI	TCATGA	1 cut(s)	723
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	381
CviAII	CATG	4 cut(s)	176, 530, 635, 724
DdeI	CTNAG	3 cut(s)	66, 283, 589
DpnI	GATC	5 cut(s)	52, 155, 227, 330, 569
DpnII	GATC	5 cut(s)	50, 153, 225, 328, 567
EaeI	YGGCCR	1 cut(s)	607
Eam1104I	CTCTTC	2 cut(s)	163, 231
EarI	CTCTTC	2 cut(s)	163, 231
Ecl136II	GAGCTC	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	2 cut(s)	175, 648
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	31, 700
EcoT38I	GRGCYC	2 cut(s)	175, 648
FaeI	CATG	4 cut(s)	179, 533, 638, 727
FatI	CATG	4 cut(s)	175, 529, 634, 723
FauI	CCCGC	1 cut(s)	113
FauNDI	CATATG	1 cut(s)	604
Fnu4HI	GCNGC	2 cut(s)	189, 207
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	2 cut(s)	175, 648
Fsp4HI	GCNGC	2 cut(s)	189, 207
FspBI	CTAG	2 cut(s)	192, 620
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	189, 207
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	31, 609
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	4 cut(s)	179, 533, 638, 727
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	553
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	2 cut(s)	31, 371
Hpy166II	GTNNAC	5 cut(s)	310, 511, 535, 676, 697
Hpy188I	TCNGA	4 cut(s)	167, 391, 592, 763
Hpy188III	TCNNGA	4 cut(s)	233, 326, 442, 724
Hpy8I	GTNNAC	5 cut(s)	310, 511, 535, 676, 697
HpyAV	CCTTC	3 cut(s)	21, 74, 491
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4V	TGCA	6 cut(s)	38, 92, 209, 409, 535, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 215, 498
HpyF3I	CTNAG	3 cut(s)	66, 283, 589
Hsp92II	CATG	4 cut(s)	179, 533, 638, 727
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	5 cut(s)	50, 153, 225, 328, 567
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	168
Lsp1109I	GCAGC	2 cut(s)	175, 193
LweI	GCATC	3 cut(s)	79, 396, 501
MaeI	CTAG	2 cut(s)	192, 620
MaeIII	GTNAC	4 cut(s)	19, 73, 112, 584
MalI	GATC	5 cut(s)	52, 155, 227, 330, 569
MboI	GATC	5 cut(s)	50, 153, 225, 328, 567
MboII	GAAGA	4 cut(s)	180, 248, 323, 404
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	3 cut(s)	175, 537, 648
MlsI	TGGCCA	1 cut(s)	609
MluCI	AATT	3 cut(s)	504, 522, 688
MluNI	TGGCCA	1 cut(s)	609
Mox20I	TGGCCA	1 cut(s)	609
MscI	TGGCCA	1 cut(s)	609
MseI	TTAA	1 cut(s)	743
MslI	CAYNNNNRTG	2 cut(s)	540, 639
Msp20I	TGGCCA	1 cut(s)	609
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	2 cut(s)	33, 702
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	2 cut(s)	33, 702
MwoI	GCNNNNNNNGC	3 cut(s)	62, 215, 498
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	5 cut(s)	50, 153, 225, 328, 567
NlaIII	CATG	4 cut(s)	179, 533, 638, 727
NmuCI	GTSAC	3 cut(s)	19, 73, 112
PaeR7I	CTCGAG	1 cut(s)	252
PagI	TCATGA	1 cut(s)	723
PceI	AGGCCT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	553
PkrI	GCNGC	2 cut(s)	190, 208
Psp124BI	GAGCTC	1 cut(s)	648
Psp6I	CCWGG	2 cut(s)	31, 700
PspGI	CCWGG	2 cut(s)	31, 700
PspXI	VCTCGAGB	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	540, 639
SacI	GAGCTC	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	743
SatI	GCNGC	2 cut(s)	189, 207
Sau3AI	GATC	5 cut(s)	50, 153, 225, 328, 567
ScrFI	CCNGG	2 cut(s)	33, 702
SduI	GDGCHC	3 cut(s)	175, 537, 648
SfaNI	GCATC	3 cut(s)	79, 396, 501
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	540, 639
SmlI	CTYRAG	2 cut(s)	252, 458
SmoI	CTYRAG	2 cut(s)	252, 458
Sse9I	AATT	3 cut(s)	504, 522, 688
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	2 cut(s)	192, 620
SstI	GAGCTC	1 cut(s)	648
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	31, 700
TaaI	ACNGT	1 cut(s)	685
TaqI	TCGA	5 cut(s)	234, 253, 327, 495, 556
TasI	AATT	3 cut(s)	504, 522, 688
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	1 cut(s)	743
Tru9I	TTAA	1 cut(s)	743
TscAI	CASTG	4 cut(s)	82, 109, 121, 493
TseFI	GTSAC	3 cut(s)	19, 73, 112
TseI	GCWGC	2 cut(s)	188, 206
Tsp45I	GTSAC	3 cut(s)	19, 73, 112
TspDTI	ATGAA	3 cut(s)	307, 482, 588
TspRI	CASTG	4 cut(s)	82, 109, 121, 493
VneI	GTGCAC	1 cut(s)	533
XhoI	CTCGAG	1 cut(s)	252
XspI	CTAG	2 cut(s)	192, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.