Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010307

Physical Location & Seq

Genomic Coordinates Reverse (-)

21711115 .. 21715154

Gene Structure 4040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1139500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATTTCTTTGCATTGGTGACGGGAAAACGAGGGCCAAGTGGGTTTGGATCAGCTTCCACTGCTGAGCAGGTTACTGAAGGAGTTGATGCATCCAACCTTACCGCCATTGTTACTGGAGGAGCTAGTGGGATTGGGTTAGAGACTGCAAGGGTGTTGGCACTCCGCGGAGCTCATGTCATCATCGCCGCCAGAAACCTTGAGGCTGCAGGTGAAGCCAAACAGCTTATTCTTAAAGACAATCATACAGCTCGAATCGATGTTCTGAAACTTGACCTCAGCTCTATCAAGTCTGTTAGATCATTTGTCAACAGCTTCAACGCTCTCGATCTCCCTCTCAACCTCTTAATAAACAATGCTGGTGTTATGTTCTGCCCCTTCCAGCTTTCAGAAGATGGAATAGAGATGCACTTTGCAACCAATCATCTTGGTCATTTTCTGTTAACGAACCTTCTCCTCGAGAAAATGAAGACTACTGCTAAAACTACTGGTGTGGAAGGCAGAATTGTGAATCTATCATCTCTTGCTCATGCAGGCACTTATAAAGGCGGGATTCGATTCGACAAAATCAATGATCCAGATAGTTACTCCACGATAAATGCATACGGGCAATCCAAATTAGCAAACTTACTGCATGCCAATGAGCTCTCTCGTCGATTGCAGGAAGAAGGTGTGAGCATTACAGTCAACTCTGTCCACCCAGGATTGATCATGACACCTCTCATGAGACATAATCCTCTTTTGATGAAGGCTTTTAAGATGTTCACCTTCTGCATGTGGAAGAATGTACCTCAGGGAGCGGCCACAACATCATATGTAGCTCTGCACCCGAAGCTGAAAGGTGTGACCGGAAAATACTATGCCGACTGCAATGAGACGGAACCCAGCAAAGATGCCGGTGATGAAAACTTGGCCAAAAAGCTTTGGGACTTCAGCAACAAGTTGATTGATGGAGCTTCCGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

323

Amino Acids

34.79

Weight (kDa)

7.76

Isoelectric Point (pI)

28.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	35 - 178	1.7e-24	short chain dehydrogenase
KR	PF08659	35 - 123	1.2e-08	KR domain
adh_short_C2	PF13561	42 - 284	1e-15	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37540 AT2G37540 AT5G02540
fragaria_vesca	FvH4_6g14170 FvH4_6g14170
malus_domestica	MD04G1123600.v1.1 MD04G1124100.v1.1 MD12G1139500.v1.1
prunus_persica	Prupe.6G251300_v2.0.a1 Prupe.6G251300_v2.0.a1 Prupe.6G251400_v2.0.a1
pyrus_communis	pycom12g13380
rosa_chinensis	RchiOBHm_Chr3g0467121
rosa_laevigata	RLG00000024524
rosa_multiflora	Rmu_sc0018989.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413870
rosa_rugosa	Rorug03G0085500
rosa_samantha	Rh3BG154900 Rh3CG154700 Rh3DG155800
rosa_wichuraiana	Rw3G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AarI	CACCTGC	1 cut(s)	200
Acc36I	ACCTGC	2 cut(s)	61, 200
AccBSI	CCGCTC	1 cut(s)	800
AccII	CGCG	1 cut(s)	168
AciI	CCGC	6 cut(s)	105, 166, 168, 189, 549, 800
AclWI	GGATC	2 cut(s)	58, 569
AcoI	YGGCCR	2 cut(s)	801, 912
AcuI	CTGAAG	2 cut(s)	99, 916
AfaI	GTAC	1 cut(s)	789
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	700
Alw21I	GWGCWC	2 cut(s)	175, 648
Alw26I	GTCTC	3 cut(s)	137, 721, 869
AlwI	GGATC	2 cut(s)	58, 569
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	3 cut(s)	35, 801, 912
ApeKI	GCWGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	4 cut(s)	31, 224, 757, 911
AvaI	CYCGRG	1 cut(s)	458
AxyI	CCTNAGG	1 cut(s)	792
BalI	TGGCCA	1 cut(s)	914
BanII	GRGCYC	2 cut(s)	175, 648
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	2 cut(s)	175, 648
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	389, 944
BciT130I	CCWGG	1 cut(s)	702
BclI	TGATCA	1 cut(s)	708
BcoDI	GTCTC	3 cut(s)	137, 721, 869
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	2 cut(s)	61, 200
BisI	GCNGC	3 cut(s)	189, 207, 801
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	3 cut(s)	190, 208, 802
Bme1390I	CCNGG	1 cut(s)	702
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	1 cut(s)	702
BmsI	GCATC	4 cut(s)	79, 101, 396, 883
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	166, 700
BsaWI	WCCGGW	1 cut(s)	848
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bse118I	RCCGGY	1 cut(s)	896
Bse1I	ACTGG	2 cut(s)	121, 493
Bse21I	CCTNAGG	1 cut(s)	792
Bse3DI	GCAATG	1 cut(s)	877
BseBI	CCWGG	1 cut(s)	702
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	166, 700
BseGI	GGATG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	877
BseMII	CTCAG	3 cut(s)	57, 292, 806
BseNI	ACTGG	2 cut(s)	121, 493
BseRI	GAGGAG	2 cut(s)	135, 446
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	884
BsgI	GTGCAG	1 cut(s)	809
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	37, 803, 914
BshVI	ATCGAT	1 cut(s)	258
BsiHKAI	GWGCWC	2 cut(s)	175, 648
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	2 cut(s)	849, 897
BslFI	GGGAC	1 cut(s)	941
BsmAI	GTCTC	3 cut(s)	137, 721, 869
BsmBI	CGTCTC	1 cut(s)	869
BsmFI	GGGAC	1 cut(s)	941
BsnI	GGCC	3 cut(s)	37, 803, 914
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	2 cut(s)	175, 648
Bsp143I	GATC	5 cut(s)	50, 299, 328, 574, 708
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	6 cut(s)	105, 166, 168, 189, 549, 800
BspANI	GGCC	3 cut(s)	37, 803, 914
BspCNI	CTCAG	3 cut(s)	58, 291, 805
BspDI	ATCGAT	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	2 cut(s)	711, 723
BspLI	GGNNCC	1 cut(s)	882
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	2 cut(s)	61, 200
BspPI	GGATC	2 cut(s)	58, 569
BsrBI	CCGCTC	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	877
BsrFI	RCCGGY	1 cut(s)	896
BsrI	ACTGG	2 cut(s)	121, 493
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	2 cut(s)	166, 700
BssMI	GATC	5 cut(s)	50, 299, 328, 574, 708
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	1 cut(s)	685
BstC8I	GCNNGC	2 cut(s)	535, 636
BstDEI	CTNAG	3 cut(s)	66, 278, 792
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	5 cut(s)	53, 302, 331, 577, 711
BstMAI	GTCTC	3 cut(s)	137, 721, 869
BstMBI	GATC	5 cut(s)	50, 299, 328, 574, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 215, 832
BstNI	CCWGG	1 cut(s)	702
BstNSI	RCATGY	2 cut(s)	638, 778
BstSCI	CCNGG	1 cut(s)	700
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	476
Bsu15I	ATCGAT	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	792
BsuRI	GGCC	3 cut(s)	37, 803, 914
BsuTUI	ATCGAT	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	166
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	2 cut(s)	61, 200
Cac8I	GCNNGC	2 cut(s)	535, 636
CciI	TCATGA	2 cut(s)	711, 723
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	1 cut(s)	35
Cfr42I	CCGCGG	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	788
CviAII	CATG	6 cut(s)	176, 530, 635, 712, 724, 775
CviQI	GTAC	1 cut(s)	788
DdeI	CTNAG	3 cut(s)	66, 278, 792
DpnI	GATC	5 cut(s)	52, 301, 330, 576, 710
DpnII	GATC	5 cut(s)	50, 299, 328, 574, 708
EaeI	YGGCCR	2 cut(s)	801, 912
Ecl136II	GAGCTC	2 cut(s)	173, 646
Eco24I	GRGCYC	2 cut(s)	175, 648
Eco53kI	GAGCTC	2 cut(s)	173, 646
Eco57I	CTGAAG	2 cut(s)	99, 916
Eco81I	CCTNAGG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	458
EcoICRI	GAGCTC	2 cut(s)	173, 646
EcoRII	CCWGG	1 cut(s)	700
EcoT22I	ATGCAT	2 cut(s)	94, 604
EcoT38I	GRGCYC	2 cut(s)	175, 648
Esp3I	CGTCTC	1 cut(s)	869
FaeI	CATG	6 cut(s)	179, 533, 638, 715, 727, 778
FaqI	GGGAC	1 cut(s)	941
FatI	CATG	6 cut(s)	175, 529, 634, 711, 723, 774
FauI	CCCGC	1 cut(s)	542
FauNDI	CATATG	1 cut(s)	814
FbaI	TGATCA	1 cut(s)	708
Fnu4HI	GCNGC	3 cut(s)	189, 207, 801
FokI	GGATG	1 cut(s)	79
FriOI	GRGCYC	2 cut(s)	175, 648
Fsp4HI	GCNGC	3 cut(s)	189, 207, 801
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	3 cut(s)	189, 207, 801
GsaI	CCCAGC	1 cut(s)	888
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	37, 803, 914
HapII	CCGG	2 cut(s)	849, 897
Hin1II	CATG	6 cut(s)	179, 533, 638, 715, 727, 778
HincII	GTYRAC	3 cut(s)	310, 444, 688
HindII	GTYRAC	3 cut(s)	310, 444, 688
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	4 cut(s)	255, 511, 553, 558
HpaI	GTTAAC	1 cut(s)	444
HpaII	CCGG	2 cut(s)	849, 897
HphI	GGTGA	4 cut(s)	31, 224, 757, 911
Hpy166II	GTNNAC	5 cut(s)	310, 444, 688, 697, 765
Hpy188I	TCNGA	4 cut(s)	267, 391, 961, 968
Hpy188III	TCNNGA	5 cut(s)	326, 460, 578, 712, 724
Hpy8I	GTNNAC	5 cut(s)	310, 444, 688, 697, 765
Hpy99I	CGWCG	1 cut(s)	657
HpyAV	CCTTC	7 cut(s)	74, 388, 461, 491, 662, 742, 778
HpyCH4III	ACNGT	1 cut(s)	685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 215, 832
HpyF3I	CTNAG	3 cut(s)	66, 278, 792
Hsp92II	CATG	6 cut(s)	179, 533, 638, 715, 727, 778
Ksp22I	TGATCA	1 cut(s)	708
KspAI	GTTAAC	1 cut(s)	444
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	50, 299, 328, 574, 708
LmnI	GCTCC	4 cut(s)	122, 170, 797, 953
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	4 cut(s)	79, 101, 396, 883
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	5 cut(s)	19, 73, 112, 584, 844
MalI	GATC	5 cut(s)	52, 301, 330, 576, 710
MbiI	CCGCTC	1 cut(s)	800
MboI	GATC	5 cut(s)	50, 299, 328, 574, 708
MboII	GAAGA	4 cut(s)	404, 481, 677, 793
MhlI	GDGCHC	2 cut(s)	175, 648
MlsI	TGGCCA	1 cut(s)	914
MluCI	AATT	2 cut(s)	504, 617
MluNI	TGGCCA	1 cut(s)	914
MmeI	TCCRAC	1 cut(s)	120
Mox20I	TGGCCA	1 cut(s)	914
Mph1103I	ATGCAT	2 cut(s)	94, 604
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	4 cut(s)	234, 347, 443, 756
MslI	CAYNNNNRTG	1 cut(s)	639
Msp20I	TGGCCA	1 cut(s)	914
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	2 cut(s)	849, 897
MspR9I	CCNGG	1 cut(s)	702
MvaI	CCWGG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	62, 215, 832
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	5 cut(s)	50, 299, 328, 574, 708
NlaIII	CATG	6 cut(s)	179, 533, 638, 715, 727, 778
NlaIV	GGNNCC	1 cut(s)	882
NmuCI	GTSAC	2 cut(s)	19, 844
NsiI	ATGCAT	2 cut(s)	94, 604
NspI	RCATGY	2 cut(s)	638, 778
PaeI	GCATGC	1 cut(s)	638
PaeR7I	CTCGAG	1 cut(s)	458
PagI	TCATGA	2 cut(s)	711, 723
PaqCI	CACCTGC	1 cut(s)	200
PfeI	GAWTC	4 cut(s)	255, 511, 553, 558
PkrI	GCNGC	3 cut(s)	190, 208, 802
PsiI	TTATAA	1 cut(s)	543
Psp124BI	GAGCTC	2 cut(s)	175, 648
Psp6I	CCWGG	1 cut(s)	700
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	1 cut(s)	882
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	789
RsaNI	GTAC	1 cut(s)	788
RseI	CAYNNNNRTG	1 cut(s)	639
SacI	GAGCTC	2 cut(s)	175, 648
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	4 cut(s)	234, 347, 443, 756
SatI	GCNGC	3 cut(s)	189, 207, 801
Sau3AI	GATC	5 cut(s)	50, 299, 328, 574, 708
Sau96I	GGNCC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	702
SduI	GDGCHC	2 cut(s)	175, 648
SfaNI	GCATC	4 cut(s)	79, 101, 396, 883
SfcI	CTRYAG	1 cut(s)	207
Sfr274I	CTCGAG	1 cut(s)	458
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SlaI	CTCGAG	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	2 cut(s)	200, 458
SmoI	CTYRAG	2 cut(s)	200, 458
SphI	GCATGC	1 cut(s)	638
Sse9I	AATT	2 cut(s)	504, 617
SsiI	CCGC	6 cut(s)	105, 166, 168, 189, 549, 800
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	2 cut(s)	175, 648
StyD4I	CCNGG	1 cut(s)	700
TaaI	ACNGT	1 cut(s)	685
TaqI	TCGA	7 cut(s)	253, 258, 327, 459, 556, 561, 655
TasI	AATT	2 cut(s)	504, 617
TauI	GCSGC	2 cut(s)	191, 803
TfiI	GAWTC	4 cut(s)	255, 511, 553, 558
Tru1I	TTAA	4 cut(s)	234, 347, 443, 756
Tru9I	TTAA	4 cut(s)	234, 347, 443, 756
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	2 cut(s)	19, 844
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	2 cut(s)	19, 844
TspDTI	ATGAA	3 cut(s)	482, 761, 918
TspGWI	ACGGA	1 cut(s)	893
TspRI	CASTG	1 cut(s)	67
XceI	RCATGY	2 cut(s)	638, 778
XhoI	CTCGAG	1 cut(s)	458
XspI	CTAG	1 cut(s)	126
Zsp2I	ATGCAT	2 cut(s)	94, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.