Prupe.6G251300_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010307
Physical Location & Seq
Reverse (-)
24609123 .. 24612387
3265 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G251300.2

Sequence Viewer

Length: 1014 bp
ATGCATTTGTGCTCATCTTTGTCTTTTACCCTCCAAGTTTCTGAAATGGGTATCTTTGCATTGATGACAGGAAGGCCAGGGCCTAGTGGGTTTGGGTCAGCTTCAACTGCTGAGCAGGTCACTGAAGGAGTTGATGCTAGCAACCTTACCGCTATTGTAACTGGTGGGGCAAGTGGGATTGGGTTTGAGACAGCAAGAGTCTTGGCACTTCGTAGAGCCCATGTCATCATTGCCGCCAGAAACATAGAGGCTGCTAATGAAGCAAAACAGGCTATTATTAAAGAAAATATAAGTGCCCGAGTGGATGTTCTGAAACTTGACCTCTGCTCTCTCAAGTCTGTTAGAGCATTTGTTGATAGCTTCAACGCTCTTGATCTTCCTCTCAACCTCTTAATAAACAATGCTGGTGTTATGTTCTGCTCCCACCAGCTTTCAGAAGATGGAGTAGAGGTGCAGTTTGCAACCAATCATCTTGGCCATTTTCTCTTAACAAACCTTCTGCTTGACAAAATGAAGAACACCGCTAGAACTACTGGTGTAGAAGGCAGAATTGTGATTCTGTCATCACTTGCTCATACAACCCCTTACCAAGAGGGGATTCGATTCGACAAGATCAACGATCGAATTGGTTACTCAGAACTGAAGGCATATGGGCAATCCAAATTAGCAAACTTACTGCATTCCAATGAGCTCTCTCGTCGATTGCAGGAAGAAGGTGTGAACATAACAGTCAACTCAGTCCACCCAGGATTGATCATGACACCTCTCATGAGGCATTCTCCTCTTTTGATGAAAACTTTCAAGTTGTTCACCTTTTGGATGTGGAAGAATGTACCTCAGGGAGCAGCCACAACATCATATGTAGCACTGCACCCAAAAATGAAAGGTGTGACTGGAAAATACTTTGTGGACTGCAACGAAATGAAACCCAGCTCACATGCTGGAGATGAAAAGTTGGCCAAAAAGCTTTGGGACTTCAGCAACAAGTTGATCGATGGGGCTTCCAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

338

Amino Acids

36.78

Weight (kDa)

8.95

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 3 cut(s) 150, 234, 522
AcoI YGGCCR 2 cut(s) 475, 957
AcuI CTGAAG 3 cut(s) 144, 662, 961
AfaI GTAC 1 cut(s) 834
AgsI TTSAA 3 cut(s) 105, 364, 802
AjnI CCWGG 2 cut(s) 76, 745
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 7 cut(s) 101, 360, 430, 691, 933, 967, 1011
AluI AGCT 7 cut(s) 101, 360, 430, 691, 933, 967, 1011
Alw21I GWGCWC 2 cut(s) 14, 693
Alw26I GTCTC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 4 cut(s) 74, 80, 475, 957
ApeKI GCWGC 2 cut(s) 251, 845
Asp700I GAANNNNTTC 1 cut(s) 797
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 802
AsuNHI GCTAGC 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 297
AxyI CCTNAGG 1 cut(s) 837
BaeGI GKGCMC 1 cut(s) 298
BalI TGGCCA 2 cut(s) 477, 959
BanII GRGCYC 2 cut(s) 220, 693
Bbv12I GWGCWC 2 cut(s) 14, 693
BbvI GCAGC 2 cut(s) 238, 857
BccI CCATC 2 cut(s) 434, 989
BciT130I CCWGG 2 cut(s) 78, 747
BclI TGATCA 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 3 cut(s) 84, 138, 525
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 3 cut(s) 234, 252, 846
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 3 cut(s) 235, 253, 847
Bme1390I CCNGG 2 cut(s) 78, 747
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 80
BmrFI CCNGG 2 cut(s) 78, 747
BmsI GCATC 1 cut(s) 124
BmtI GCTAGC 1 cut(s) 141
BplI GAGNNNNNCTC 2 cut(s) 763, 795
BpmI CTGGAG 1 cut(s) 963
Bpu1102I GCTNAGC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 993
BsaJI CCNNGG 2 cut(s) 77, 745
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bse1I ACTGG 3 cut(s) 166, 538, 898
Bse21I CCTNAGG 1 cut(s) 837
Bse3DI GCAATG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 78, 747
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 2 cut(s) 77, 745
BseGI GGATG 2 cut(s) 310, 825
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 4 cut(s) 102, 648, 750, 851
BseNI ACTGG 3 cut(s) 166, 538, 898
BseRI GAGGAG 1 cut(s) 771
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 2 cut(s) 238, 857
BseYI CCCAGC 1 cut(s) 929
BsgI GTGCAG 2 cut(s) 473, 854
Bsh1285I CGRYCG 1 cut(s) 622
BshFI GGCC 4 cut(s) 76, 82, 477, 959
BshVI ATCGAT 1 cut(s) 993
BsiEI CGRYCG 1 cut(s) 622
BsiHKAI GWGCWC 2 cut(s) 14, 693
BsiHKCI CYCGRG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 986
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 986
BsmI GAATGC 2 cut(s) 679, 775
BsnI GGCC 4 cut(s) 76, 82, 477, 959
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 4 cut(s) 14, 220, 298, 693
Bsp143I GATC 5 cut(s) 373, 612, 619, 753, 990
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 3 cut(s) 150, 234, 522
BspANI GGCC 4 cut(s) 76, 82, 477, 959
BspCNI CTCAG 4 cut(s) 103, 647, 749, 850
BspDI ATCGAT 1 cut(s) 993
BspHI TCATGA 2 cut(s) 756, 768
BspMI ACCTGC 1 cut(s) 106
BspOI GCTAGC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 3 cut(s) 166, 538, 898
BssECI CCNNGG 2 cut(s) 77, 745
BssMI GATC 5 cut(s) 373, 612, 619, 753, 990
Bst2UI CCWGG 2 cut(s) 78, 747
Bst4CI ACNGT 1 cut(s) 730
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 4 cut(s) 111, 634, 736, 837
BstF5I GGATG 2 cut(s) 310, 825
BstKTI GATC 5 cut(s) 376, 615, 622, 756, 993
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 5 cut(s) 373, 612, 619, 753, 990
BstMCI CGRYCG 1 cut(s) 622
BstMWI GCNNNNNNNGC 3 cut(s) 107, 260, 269
BstNI CCWGG 2 cut(s) 78, 747
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 2 cut(s) 76, 745
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 238, 857
Bsu15I ATCGAT 1 cut(s) 993
Bsu36I CCTNAGG 1 cut(s) 837
BsuRI GGCC 4 cut(s) 76, 82, 477, 959
BsuTUI ATCGAT 1 cut(s) 993
BtsCI GGATG 2 cut(s) 310, 825
BtsI GCAGTG 1 cut(s) 866
BtsIMutI CAGTG 2 cut(s) 120, 866
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 139
CciI TCATGA 2 cut(s) 756, 768
Cfr13I GGNCC 1 cut(s) 80
ClaI ATCGAT 1 cut(s) 993
Csp6I GTAC 1 cut(s) 833
CviAII CATG 4 cut(s) 221, 757, 769, 938
CviQI GTAC 1 cut(s) 833
DdeI CTNAG 4 cut(s) 111, 634, 736, 837
DpnI GATC 5 cut(s) 375, 614, 621, 755, 992
DpnII GATC 5 cut(s) 373, 612, 619, 753, 990
EaeI YGGCCR 2 cut(s) 475, 957
Ecl136II GAGCTC 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 220, 693
Eco53kI GAGCTC 1 cut(s) 691
Eco57I CTGAAG 3 cut(s) 144, 662, 961
Eco81I CCTNAGG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 76, 745
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 220, 693
FaeI CATG 4 cut(s) 224, 760, 772, 941
FaqI GGGAC 1 cut(s) 986
FatI CATG 4 cut(s) 220, 756, 768, 937
FauNDI CATATG 2 cut(s) 649, 859
FbaI TGATCA 1 cut(s) 753
Fnu4HI GCNGC 3 cut(s) 234, 252, 846
FokI GGATG 2 cut(s) 317, 832
FriOI GRGCYC 2 cut(s) 220, 693
Fsp4HI GCNGC 3 cut(s) 234, 252, 846
FspBI CTAG 3 cut(s) 84, 138, 525
GluI GCNGC 3 cut(s) 234, 252, 846
GsaI CCCAGC 1 cut(s) 933
GsuI CTGGAG 1 cut(s) 963
HaeIII GGCC 4 cut(s) 76, 82, 477, 959
Hin1II CATG 4 cut(s) 224, 760, 772, 941
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 4 cut(s) 198, 556, 598, 603
HphI GGTGA 1 cut(s) 802
Hpy166II GTNNAC 5 cut(s) 721, 733, 742, 810, 910
Hpy188I TCNGA 4 cut(s) 43, 312, 436, 637
Hpy188III TCNNGA 3 cut(s) 371, 757, 769
Hpy8I GTNNAC 5 cut(s) 721, 733, 742, 810, 910
Hpy99I CGWCG 1 cut(s) 702
HpyAV CCTTC 6 cut(s) 66, 119, 506, 536, 637, 707
HpyCH4III ACNGT 1 cut(s) 730
HpyCH4V TGCA 8 cut(s) 4, 59, 454, 461, 679, 706, 871, 915
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 260, 269
HpyF3I CTNAG 4 cut(s) 111, 634, 736, 837
Hsp92II CATG 4 cut(s) 224, 760, 772, 941
Ksp22I TGATCA 1 cut(s) 753
Kzo9I GATC 5 cut(s) 373, 612, 619, 753, 990
LmnI GCTCC 2 cut(s) 425, 842
Lsp1109I GCAGC 2 cut(s) 238, 857
LweI GCATC 1 cut(s) 124
MaeI CTAG 3 cut(s) 84, 138, 525
MaeIII GTNAC 4 cut(s) 118, 157, 629, 889
MalI GATC 5 cut(s) 375, 614, 621, 755, 992
MboI GATC 5 cut(s) 373, 612, 619, 753, 990
MboII GAAGA 5 cut(s) 368, 449, 526, 722, 838
MhlI GDGCHC 4 cut(s) 14, 220, 298, 693
MlsI TGGCCA 2 cut(s) 477, 959
MluCI AATT 3 cut(s) 549, 624, 662
MluNI TGGCCA 2 cut(s) 477, 959
MlyI GAGTC 1 cut(s) 207
Mox20I TGGCCA 2 cut(s) 477, 959
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 797
MscI TGGCCA 2 cut(s) 477, 959
MseI TTAA 3 cut(s) 279, 392, 488
MslI CAYNNNNRTG 1 cut(s) 684
Msp20I TGGCCA 2 cut(s) 477, 959
MspR9I CCNGG 2 cut(s) 78, 747
Mva1269I GAATGC 2 cut(s) 679, 775
MvaI CCWGG 2 cut(s) 78, 747
MwoI GCNNNNNNNGC 3 cut(s) 107, 260, 269
NdeI CATATG 2 cut(s) 649, 859
NdeII GATC 5 cut(s) 373, 612, 619, 753, 990
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 4 cut(s) 224, 760, 772, 941
NmuCI GTSAC 2 cut(s) 118, 889
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 941
PagI TCATGA 2 cut(s) 756, 768
PctI GAATGC 2 cut(s) 679, 775
PdmI GAANNNNTTC 1 cut(s) 797
PfeI GAWTC 3 cut(s) 556, 598, 603
PkrI GCNGC 3 cut(s) 235, 253, 847
Ple19I CGATCG 1 cut(s) 622
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 693
Psp6I CCWGG 2 cut(s) 76, 745
PspFI CCCAGC 1 cut(s) 929
PspGI CCWGG 2 cut(s) 76, 745
PspPI GGNCC 1 cut(s) 80
PvuI CGATCG 1 cut(s) 622
RsaI GTAC 1 cut(s) 834
RsaNI GTAC 1 cut(s) 833
RseI CAYNNNNRTG 1 cut(s) 684
SacI GAGCTC 1 cut(s) 693
SaqAI TTAA 3 cut(s) 279, 392, 488
SatI GCNGC 3 cut(s) 234, 252, 846
Sau3AI GATC 5 cut(s) 373, 612, 619, 753, 990
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 2 cut(s) 78, 747
SduI GDGCHC 4 cut(s) 14, 220, 298, 693
SfaNI GCATC 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 3 cut(s) 549, 624, 662
SsiI CCGC 3 cut(s) 150, 234, 522
SspMI CTAG 3 cut(s) 84, 138, 525
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 2 cut(s) 76, 745
TaaI ACNGT 1 cut(s) 730
TaqI TCGA 5 cut(s) 601, 606, 622, 700, 993
TasI AATT 3 cut(s) 549, 624, 662
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 3 cut(s) 556, 598, 603
Tru1I TTAA 3 cut(s) 279, 392, 488
Tru9I TTAA 3 cut(s) 279, 392, 488
TscAI CASTG 2 cut(s) 127, 873
TseFI GTSAC 2 cut(s) 118, 889
TseI GCWGC 2 cut(s) 251, 845
Tsp45I GTSAC 2 cut(s) 118, 889
TspDTI ATGAA 6 cut(s) 273, 527, 806, 896, 938, 963
TspRI CASTG 2 cut(s) 127, 873
XceI RCATGY 1 cut(s) 941
XmnI GAANNNNTTC 1 cut(s) 797
XspI CTAG 3 cut(s) 84, 138, 525
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.