AT2G37630
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006575
Physical Location & Seq
Reverse (-)
15781232 .. 15783480
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37630.1

Sequence Viewer

Length: 1104 bp
ATGAAAGAGAGACAACGTTGGAGTGGTGAAGAAGATGCATTGTTACGTGCTTACGTTAGACAGTTCGGTCCGAGAGAATGGCATCTTGTGTCTGAGCGTATGAACAAACCTTTGAACCGTGACGCCAAGTCTTGTTTAGAGAGATGGAAGAATTATCTTAAGCCAGGGATCAAGAAAGGGTCTTTGACAGAGGAAGAGCAGAGGCTTGTGATCCGTCTTCAGGAGAAACACGGCAACAAGTGGAAGAAGATTGCTGCTGAGGTTCCCGGGAGGACGGCAAAGCGGTTAGGGAAGTGGTGGGAAGTGTTTAAGGAGAAGCAACAGAGAGAAGAGAAAGAGAGTAACAAGAGAGTTGAGCCTATTGACGAGAGTAAGTACGATCGGATTCTCGAGAGTTTCGCTGAGAAGCTTGTCAAAGAGCGGTCTAACGTTGTCCCTGCTGCTGCCGCTGCTGCAACGGTTGTGATGGCTAATTCGAATGGAGGGTTTTTACATTCTGAACAACAAGTTCAGCCTCCTAACCCAGTGATCCCGCCTTGGTTAGCTACTTCTAACAATGGGAACAATGTTGTTGCAAGGCCTCCCTCGGTAACTTTGACATTATCGCCTTCCACAGTGGCTGCAGCTGCGCCTCAACCGCCAATCCCGTGGCTGCAGCAGCAACAGCCTGAGAGAGCAGAGAACGGTCCAGGGGGACTTGTGTTAGGGAGTATGATGCCGTCTTGTAGTGGGAGTAGCGAGAGTGTGTTCTTGTCAGAGCTTGTGGAGTGTTGTAGAGAGTTGGAGGAAGGGCACCGAGCTTGGGCAGACCATAAGAAAGAGGCTGCATGGAGGCTAAGAAGGCTGGAGCTGCAGCTAGAGTCAGAGAAGACGTGTAGACAAAGGGAGAAGATGGAGGAGATTGAGGCAAAGATGAAAGCTCTTAGGGAAGAGCAGAAGAACGCAATGGAGAAGATCGAAGGAGAGTACAGAGAACAGCTCGTTGGTTTGAGGCGAGACGCAGAGGCCAAAGACCAGAAACTGGCTGATCAATGGACCTCTAGGCATATCAGACTCACCAAGTTTCTTGAACAACAAATGGGTTGCAGATTAGACCGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002682 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009798 GO:0009889 GO:0009890 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010338 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045892 GO:0045934 GO:0046677 GO:0046686 GO:0046983 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051301 GO:0051704 GO:0051707 GO:0060255 GO:0065001 GO:0065007 GO:0070013 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

367

Amino Acids

42.24

Weight (kDa)

9.16

Isoelectric Point (pI)

65.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 4 - 53 4.4e-11 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 7 - 60 2.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 59 - 94 2e-09 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 63 - 110 2.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 792
AccB7I CCANNNNNTGG 1 cut(s) 1021
AccBSI CCGCTC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 877
AciI CCGC 6 cut(s) 283, 421, 447, 533, 638, 1096
AclI AACGTT 2 cut(s) 16, 429
AclWI GGATC 3 cut(s) 176, 205, 523
AcuI CTGAAG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 377, 968
AfiI CCNNNNNNNGG 3 cut(s) 220, 802, 1021
AflII CTTAAG 1 cut(s) 158
AflIII ACRYGT 1 cut(s) 872
AgsI TTSAA 2 cut(s) 115, 1070
AhdI GACNNNNNGTC 1 cut(s) 127
AjiI CACGTC 1 cut(s) 873
AjnI CCWGG 2 cut(s) 163, 688
AjuI GAANNNNNNNTTGG 2 cut(s) 966, 998
AluBI AGCT 9 cut(s) 409, 545, 626, 760, 800, 850, 856, 920, 979
AluI AGCT 9 cut(s) 409, 545, 626, 760, 800, 850, 856, 920, 979
Alw26I GTCTC 2 cut(s) 4, 990
AlwI GGATC 3 cut(s) 176, 205, 523
AlwNI CAGNNNCTG 2 cut(s) 620, 1021
Ama87I CYCGRG 2 cut(s) 266, 389
AoxI GGCC 2 cut(s) 578, 1005
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 3 cut(s) 68, 686, 1035
AsuC2I CCSGG 2 cut(s) 267, 268
AsuHPI GGTGA 2 cut(s) 38, 1048
AsuII TTCGAA 1 cut(s) 476
AvaI CYCGRG 2 cut(s) 266, 389
AvaII GGWCC 3 cut(s) 68, 686, 1035
BaeGI GKGCMC 1 cut(s) 795
BanI GGYRCC 1 cut(s) 792
BbsI GAAGAC 2 cut(s) 209, 875
BbvCI CCTCAGC 1 cut(s) 258
BccI CCATC 3 cut(s) 138, 460, 886
BceAI ACGGC 3 cut(s) 247, 291, 703
BciT130I CCWGG 2 cut(s) 165, 690
BclI TGATCA 1 cut(s) 1027
BcnI CCSGG 2 cut(s) 267, 268
BcoDI GTCTC 2 cut(s) 4, 990
BfaI CTAG 2 cut(s) 857, 1041
BfmI CTRYAG 3 cut(s) 621, 653, 851
BfrI CTTAAG 1 cut(s) 158
Bme1390I CCNGG 4 cut(s) 165, 267, 268, 690
Bme18I GGWCC 3 cut(s) 68, 686, 1035
BmeRI GACNNNNNGTC 1 cut(s) 127
BmeT110I CYCGRG 2 cut(s) 266, 389
BmgBI CACGTC 1 cut(s) 873
BmgT120I GGNCC 3 cut(s) 68, 686, 1035
BmiI GGNNCC 2 cut(s) 264, 794
BmrFI CCNGG 4 cut(s) 165, 267, 268, 690
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 3 cut(s) 25, 91, 705
BmuI ACTGGG 1 cut(s) 518
BpiI GAAGAC 2 cut(s) 209, 875
BplI GAGNNNNNCTC 2 cut(s) 963, 995
BpmI CTGGAG 1 cut(s) 866
Bpu10I CCTNAGC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 476
BpuMI CCSGG 2 cut(s) 267, 268
BsaAI YACGTR 1 cut(s) 47
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 6 cut(s) 164, 266, 536, 585, 647, 689
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 802, 1021
Bse1I ACTGG 2 cut(s) 524, 1026
Bse3DI GCAATG 1 cut(s) 951
BseBI CCWGG 2 cut(s) 165, 690
BseDI CCNNGG 6 cut(s) 164, 266, 536, 585, 647, 689
BseLI CCNNNNNNNGG 3 cut(s) 220, 802, 1021
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 4 cut(s) 84, 249, 393, 660
BseNI ACTGG 2 cut(s) 524, 1026
BseRI GAGGAG 1 cut(s) 911
BseSI GKGCMC 1 cut(s) 795
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 2 cut(s) 580, 1007
BshNI GGYRCC 1 cut(s) 792
BsiEI CGRYCG 1 cut(s) 382
BsiHKCI CYCGRG 2 cut(s) 266, 389
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 2 cut(s) 419, 708
BslI CCNNNNNNNGG 3 cut(s) 220, 802, 1021
BsmAI GTCTC 2 cut(s) 4, 990
BsmBI CGTCTC 1 cut(s) 990
BsmFI GGGAC 2 cut(s) 419, 708
BsnI GGCC 2 cut(s) 580, 1007
BsoBI CYCGRG 2 cut(s) 266, 389
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 1 cut(s) 795
Bsp143I GATC 6 cut(s) 168, 210, 379, 528, 954, 1027
BspACI CCGC 6 cut(s) 283, 421, 447, 533, 638, 1096
BspANI GGCC 2 cut(s) 580, 1007
BspCNI CTCAG 4 cut(s) 85, 250, 394, 661
BspLI GGNNCC 2 cut(s) 264, 794
BspMAI CTGCAG 3 cut(s) 625, 657, 855
BspPI GGATC 3 cut(s) 176, 205, 523
BspQI GCTCTTC 2 cut(s) 189, 924
BspT104I TTCGAA 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 792
BspTI CTTAAG 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 951
BsrI ACTGG 2 cut(s) 524, 1026
BssECI CCNNGG 6 cut(s) 164, 266, 536, 585, 647, 689
BssMI GATC 6 cut(s) 168, 210, 379, 528, 954, 1027
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 165, 690
Bst4CI ACNGT 5 cut(s) 63, 119, 460, 616, 686
Bst6I CTCTTC 3 cut(s) 189, 324, 924
BstACI GRCGYC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 476
BstDEI CTNAG 6 cut(s) 93, 258, 402, 669, 836, 923
BstDSI CCRYGG 1 cut(s) 647
BstHHI GCGC 1 cut(s) 631
BstKTI GATC 6 cut(s) 171, 213, 382, 531, 957, 1030
BstMAI GTCTC 2 cut(s) 4, 990
BstMBI GATC 6 cut(s) 168, 210, 379, 528, 954, 1027
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 9 cut(s) 446, 449, 452, 626, 637, 658, 664, 841, 850
BstNI CCWGG 2 cut(s) 165, 690
BstSCI CCNGG 4 cut(s) 163, 265, 266, 688
BstSFI CTRYAG 3 cut(s) 621, 653, 851
BstSLI GKGCMC 1 cut(s) 795
BstV2I GAAGAC 2 cut(s) 209, 875
BstXI CCANNNNNNTGG 1 cut(s) 648
BsuRI GGCC 2 cut(s) 580, 1007
BtgI CCRYGG 1 cut(s) 647
BtrI CACGTC 1 cut(s) 873
BtsIMutI CAGTG 2 cut(s) 531, 621
CaiI CAGNNNCTG 2 cut(s) 620, 1021
CfoI GCGC 1 cut(s) 631
Cfr13I GGNCC 3 cut(s) 68, 686, 1035
Cfr9I CCCGGG 1 cut(s) 266
CpoI CGGWCCG 1 cut(s) 68
CseI GACGC 2 cut(s) 131, 1007
Csp6I GTAC 2 cut(s) 376, 967
CspI CGGWCCG 1 cut(s) 68
CviAII CATG 1 cut(s) 828
CviQI GTAC 2 cut(s) 376, 967
DdeI CTNAG 6 cut(s) 93, 258, 402, 669, 836, 923
DpnI GATC 6 cut(s) 170, 212, 381, 530, 956, 1029
DpnII GATC 6 cut(s) 168, 210, 379, 528, 954, 1027
DrdI GACNNNNNNGTC 1 cut(s) 66
DriI GACNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 66
Eam1104I CTCTTC 3 cut(s) 189, 324, 924
Eam1105I GACNNNNNGTC 1 cut(s) 127
EarI CTCTTC 3 cut(s) 189, 324, 924
Eco130I CCWWGG 1 cut(s) 536
Eco147I AGGCCT 1 cut(s) 580
Eco47I GGWCC 3 cut(s) 68, 686, 1035
Eco57I CTGAAG 1 cut(s) 203
Eco88I CYCGRG 2 cut(s) 266, 389
EcoRII CCWGG 2 cut(s) 163, 688
EcoT14I CCWWGG 1 cut(s) 536
EcoT22I ATGCAT 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 536
Esp3I CGTCTC 1 cut(s) 990
FaeI CATG 1 cut(s) 831
FaiI YATR 5 cut(s) 101, 713, 813, 829, 1047
FaqI GGGAC 2 cut(s) 419, 708
FatI CATG 1 cut(s) 827
FauI CCCGC 1 cut(s) 540
FbaI TGATCA 1 cut(s) 1027
FblI GTMKAC 1 cut(s) 877
FspBI CTAG 2 cut(s) 857, 1041
GlaI GCGC 1 cut(s) 630
GsuI CTGGAG 1 cut(s) 866
HaeIII GGCC 2 cut(s) 580, 1007
HapII CCGG 1 cut(s) 267
HgaI GACGC 2 cut(s) 131, 1007
HhaI GCGC 1 cut(s) 631
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 1 cut(s) 831
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 3 cut(s) 385, 860, 1053
HpaII CCGG 1 cut(s) 267
HphI GGTGA 2 cut(s) 38, 1048
Hpy166II GTNNAC 1 cut(s) 878
Hpy188I TCNGA 7 cut(s) 72, 94, 384, 499, 757, 865, 1052
Hpy188III TCNNGA 5 cut(s) 172, 221, 389, 391, 1067
Hpy8I GTNNAC 1 cut(s) 878
HpyAV CCTTC 4 cut(s) 618, 782, 834, 953
HpyCH4III ACNGT 5 cut(s) 63, 119, 460, 616, 686
HpyCH4IV ACGT 5 cut(s) 16, 46, 54, 429, 872
HpyCH4V TGCA 8 cut(s) 38, 455, 575, 623, 655, 827, 853, 1086
HpyF10VI GCNNNNNNNGC 9 cut(s) 446, 449, 452, 626, 637, 658, 664, 841, 850
HpyF3I CTNAG 6 cut(s) 93, 258, 402, 669, 836, 923
HpySE526I ACGT 5 cut(s) 16, 46, 54, 429, 872
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 1 cut(s) 831
HspAI GCGC 1 cut(s) 629
Ksp22I TGATCA 1 cut(s) 1027
Kzo9I GATC 6 cut(s) 168, 210, 379, 528, 954, 1027
LguI GCTCTTC 2 cut(s) 189, 924
LmnI GCTCC 1 cut(s) 847
LweI GCATC 3 cut(s) 25, 91, 705
MaeI CTAG 2 cut(s) 857, 1041
MaeII ACGT 5 cut(s) 16, 46, 54, 429, 872
MaeIII GTNAC 4 cut(s) 42, 119, 341, 589
MalI GATC 6 cut(s) 170, 212, 381, 530, 956, 1029
MbiI CCGCTC 1 cut(s) 421
MboI GATC 6 cut(s) 168, 210, 379, 528, 954, 1027
MhlI GDGCHC 1 cut(s) 795
MluCI AATT 2 cut(s) 151, 472
MlyI GAGTC 2 cut(s) 869, 1047
MmeI TCCRAC 1 cut(s) 762
Mph1103I ATGCAT 1 cut(s) 40
MseI TTAA 2 cut(s) 159, 309
MspA1I CMGCKG 2 cut(s) 449, 626
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 4 cut(s) 165, 267, 268, 690
MvaI CCWGG 2 cut(s) 165, 690
MwoI GCNNNNNNNGC 9 cut(s) 446, 449, 452, 626, 637, 658, 664, 841, 850
NciI CCSGG 2 cut(s) 267, 268
NdeII GATC 6 cut(s) 168, 210, 379, 528, 954, 1027
NlaIII CATG 1 cut(s) 831
NlaIV GGNNCC 2 cut(s) 264, 794
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 40
NspV TTCGAA 1 cut(s) 476
PaeR7I CTCGAG 1 cut(s) 389
PceI AGGCCT 1 cut(s) 580
PciSI GCTCTTC 2 cut(s) 189, 924
PfeI GAWTC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 1021
Ple19I CGATCG 1 cut(s) 382
PleI GAGTC 2 cut(s) 868, 1047
PpsI GAGTC 2 cut(s) 868, 1047
Ppu21I YACGTR 1 cut(s) 47
Psp1406I AACGTT 2 cut(s) 16, 429
Psp6I CCWGG 2 cut(s) 163, 688
PspGI CCWGG 2 cut(s) 163, 688
PspN4I GGNNCC 2 cut(s) 264, 794
PspPI GGNCC 3 cut(s) 68, 686, 1035
PstI CTGCAG 3 cut(s) 625, 657, 855
PstNI CAGNNNCTG 2 cut(s) 620, 1021
PvuI CGATCG 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 2 cut(s) 377, 968
RsaNI GTAC 2 cut(s) 376, 967
Rsr2I CGGWCCG 1 cut(s) 68
RsrII CGGWCCG 1 cut(s) 68
SapI GCTCTTC 2 cut(s) 189, 924
SaqAI TTAA 2 cut(s) 159, 309
Sau3AI GATC 6 cut(s) 168, 210, 379, 528, 954, 1027
Sau96I GGNCC 3 cut(s) 68, 686, 1035
SchI GAGTC 2 cut(s) 869, 1047
ScrFI CCNGG 4 cut(s) 165, 267, 268, 690
SduI GDGCHC 1 cut(s) 795
SfaNI GCATC 3 cut(s) 25, 91, 705
SfcI CTRYAG 3 cut(s) 621, 653, 851
Sfr274I CTCGAG 1 cut(s) 389
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 3 cut(s) 68, 686, 1035
SlaI CTCGAG 1 cut(s) 389
SmaI CCCGGG 1 cut(s) 268
SmlI CTYRAG 2 cut(s) 158, 389
SmoI CTYRAG 2 cut(s) 158, 389
Sse9I AATT 2 cut(s) 151, 472
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 6 cut(s) 283, 421, 447, 533, 638, 1096
SspMI CTAG 2 cut(s) 857, 1041
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 4 cut(s) 163, 265, 266, 688
StyI CCWWGG 1 cut(s) 536
TaaI ACNGT 5 cut(s) 63, 119, 460, 616, 686
TaiI ACGT 5 cut(s) 19, 49, 57, 432, 875
TaqI TCGA 3 cut(s) 390, 476, 957
TaqII GACCGA 1 cut(s) 56
TasI AATT 2 cut(s) 151, 472
TatI WGTACW 1 cut(s) 966
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 2 cut(s) 159, 309
Tru9I TTAA 2 cut(s) 159, 309
TscAI CASTG 2 cut(s) 531, 621
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 17, 116, 929
TspGWI ACGGA 1 cut(s) 203
TspMI CCCGGG 1 cut(s) 266
TspRI CASTG 2 cut(s) 531, 621
Van91I CCANNNNNTGG 1 cut(s) 1021
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 3 cut(s) 68, 686, 1035
XhoI CTCGAG 1 cut(s) 389
XmaI CCCGGG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 877
XspI CTAG 2 cut(s) 857, 1041
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.