Rmu_sc0022726.1_g000008
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022726.1
Physical Location & Seq
Reverse (-)
28077 .. 30976
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022726.1_g000008.1.cds

Sequence Viewer

Length: 1263 bp
atgaaggagaggcagcgttggagacctgaagaggatgcattgttgcgtgcatatgtgaaacaatatggaccaagggagtggaaccttgtatcacagcgcatgaacacacccctaaacagggacgccaaatcttgcttagaaaggtggaagaattatctaaaaccaggcatcaagaaaggatctcttactgaagaggaacagcgtcttgtcatttgccttcaagagaaacacggtaataaatggaagaaaatcgctgctgaggtccctggtcgtactgctaaaagattaggcaagtggtgggaagtgttcaaagagaagcagcagagagaacagaagaacaacaagacagttgttcagcctattgaggagggcaagtacgataggattcttgaaacttttgctgagaagctagtgaaggagcgtccagccccagcttatctcatggccacttccaaaggggcctttcttcacaacgaagtgtctccagcgccctcgatgcttcctccttggctttcaaattcaaatgttacctcacatgtcaggccaccatctccttctgttaccttaagtctgtcccctacagttgcaccctctcgagcctctcctccaatcccctggctgcagcctgatagaggacctgaaaacagtagttttgtattgagcaatctgcctcctcctggttcagtcccttgtggagaaaatttcgtgatatctgagttggtggagtgctcgagagagttggaggaagtgcatcatgcttgggcagcacataaaaaggaagcctcctggaggttaagaagggtagagttgcaactggaatcggagaaggcttgtcggaagagggagaaaatggatgagattgaggcgaaggtgaaggctctaagggaagagcagaaggctgctctggataggatcgaagcagaatacagggaacaaatagctggactacggagagatgccgaattgaaggagcaaaagttggctgatcaatggtctgcaaagcatatgcgtctcactaaatttcttgagcagatgggcggcagacccaggcttgctgagcctaatggccgaggccaggggtctacgaagccagtttgcagttgggtggagtcgccggcgagcggtttgcagcgctgtccagaacctgcggttgcaggtgtggttgccgctcataaacctgcaaccccgacctccttcgaccttgatcgctgcctagaagccgtctgggatgcctctggtgtccgtccggcaagcctcgcgtag

Protein Analysis

420

Amino Acids

47.65

Weight (kDa)

9.34

Isoelectric Point (pI)

62.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1145
Acc36I ACCTGC 3 cut(s) 1145, 1153, 1186
AccBSI CCGCTC 2 cut(s) 1122, 1169
AccI GTMKAC 1 cut(s) 1082
AccII CGCG 1 cut(s) 1259
AciI CCGC 4 cut(s) 1038, 1122, 1148, 1167
AclWI GGATC 2 cut(s) 187, 920
AcoI YGGCCR 2 cut(s) 444, 1066
AcsI RAATTY 3 cut(s) 517, 700, 1019
AcuI CTGAAG 2 cut(s) 48, 210
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 274, 377
AfeI AGCGCT 1 cut(s) 1133
AfiI CCNNNNNNNGG 7 cut(s) 117, 118, 632, 677, 789, 1075, 1121
AflII CTTAAG 1 cut(s) 565
AflIII ACRYGT 1 cut(s) 535
AgsI TTSAA 6 cut(s) 221, 310, 392, 516, 522, 967
AjnI CCWGG 7 cut(s) 163, 265, 614, 676, 785, 1046, 1074
AluBI AGCT 3 cut(s) 409, 434, 941
AluI AGCT 3 cut(s) 409, 434, 941
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 3 cut(s) 16, 486, 1016
AlwI GGATC 2 cut(s) 187, 920
AlwNI CAGNNNCTG 1 cut(s) 1145
Ama87I CYCGRG 2 cut(s) 594, 730
Aor51HI AGCGCT 1 cut(s) 1133
AoxI GGCC 5 cut(s) 444, 459, 542, 1066, 1072
ApeKI GCWGC 9 cut(s) 13, 254, 319, 619, 622, 764, 899, 1129, 1209
ApoI RAATTY 3 cut(s) 517, 700, 1019
AspLEI GCGC 3 cut(s) 99, 490, 1134
AspS9I GGNCC 4 cut(s) 68, 262, 459, 635
AsuHPI GGTGA 1 cut(s) 883
AvaI CYCGRG 2 cut(s) 594, 730
AvaII GGWCC 3 cut(s) 68, 262, 635
BalI TGGCCA 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 731
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 9 cut(s) 25, 241, 331, 606, 634, 776, 886, 1141, 1196
BccI CCATC 2 cut(s) 556, 1027
BceAI ACGGC 1 cut(s) 1205
BcgI CGANNNNNNTGC 2 cut(s) 1108, 1142
BciT130I CCWGG 7 cut(s) 165, 267, 616, 678, 787, 1048, 1076
BclI TGATCA 1 cut(s) 985
BcoDI GTCTC 3 cut(s) 16, 486, 1016
BfaI CTAG 2 cut(s) 410, 1214
BfmI CTRYAG 2 cut(s) 579, 620
BfoI RGCGCY 2 cut(s) 491, 1135
BfrI CTTAAG 1 cut(s) 565
BfuAI ACCTGC 3 cut(s) 1145, 1153, 1186
BlpI GCTNAGC 1 cut(s) 1056
Bme1390I CCNGG 7 cut(s) 165, 267, 616, 678, 787, 1048, 1076
Bme18I GGWCC 3 cut(s) 68, 262, 635
BmeT110I CYCGRG 2 cut(s) 594, 730
BmgT120I GGNCC 4 cut(s) 68, 262, 459, 635
BmiI GGNNCC 3 cut(s) 83, 264, 460
BmrFI CCNGG 7 cut(s) 165, 267, 616, 678, 787, 1048, 1076
BmsI GCATC 6 cut(s) 25, 177, 486, 760, 946, 1219
BpmI CTGGAG 2 cut(s) 468, 808
Bpu10I CCTNAGC 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 1056
BpuEI CTTGAG 1 cut(s) 1046
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 7 cut(s) 71, 265, 506, 614, 1046, 1069, 1075
BsaXI ACNNNNNCTCC 4 cut(s) 359, 389, 962, 992
Bsc4I CCNNNNNNNGG 7 cut(s) 117, 118, 632, 677, 789, 1075, 1121
Bse118I RCCGGY 1 cut(s) 1114
Bse1I ACTGG 2 cut(s) 819, 1091
BseBI CCWGG 7 cut(s) 165, 267, 616, 678, 787, 1048, 1076
BseDI CCNNGG 7 cut(s) 71, 265, 506, 614, 1046, 1069, 1075
BseGI GGATG 3 cut(s) 40, 859, 1234
BseLI CCNNNNNNNGG 7 cut(s) 117, 118, 632, 677, 789, 1075, 1121
BseMII CTCAG 4 cut(s) 249, 393, 705, 1047
BseNI ACTGG 2 cut(s) 819, 1091
BseRI GAGGAG 3 cut(s) 380, 594, 663
BseXI GCAGC 9 cut(s) 25, 241, 331, 606, 634, 776, 886, 1141, 1196
BseYI CCCAGC 1 cut(s) 430
Bsh1236I CGCG 1 cut(s) 1259
BshFI GGCC 5 cut(s) 446, 461, 544, 1068, 1074
BsiHKAI GWGCWC 1 cut(s) 731
BsiHKCI CYCGRG 2 cut(s) 594, 730
BsiSI CCGG 2 cut(s) 1115, 1247
BslFI GGGAC 4 cut(s) 134, 248, 559, 671
BslI CCNNNNNNNGG 7 cut(s) 117, 118, 632, 677, 789, 1075, 1121
BsmAI GTCTC 3 cut(s) 16, 486, 1016
BsmBI CGTCTC 1 cut(s) 1016
BsmFI GGGAC 4 cut(s) 134, 248, 559, 671
BsnI GGCC 5 cut(s) 446, 461, 544, 1068, 1074
Bso31I GGTCTC 1 cut(s) 16
BsoBI CYCGRG 2 cut(s) 594, 730
Bsp1286I GDGCHC 1 cut(s) 731
Bsp143I GATC 4 cut(s) 179, 912, 985, 1204
Bsp1720I GCTNAGC 1 cut(s) 1056
BspACI CCGC 4 cut(s) 1038, 1122, 1148, 1167
BspANI GGCC 5 cut(s) 446, 461, 544, 1068, 1074
BspCNI CTCAG 4 cut(s) 250, 394, 706, 1048
BspFNI CGCG 1 cut(s) 1259
BspLI GGNNCC 3 cut(s) 83, 264, 460
BspMAI CTGCAG 1 cut(s) 624
BspMI ACCTGC 3 cut(s) 1145, 1153, 1186
BspPI GGATC 2 cut(s) 187, 920
BspQI GCTCTTC 1 cut(s) 882
BspTI CTTAAG 1 cut(s) 565
BspTNI GGTCTC 1 cut(s) 16
BsrBI CCGCTC 2 cut(s) 1122, 1169
BsrFI RCCGGY 1 cut(s) 1114
BsrI ACTGG 2 cut(s) 819, 1091
BssAI RCCGGY 1 cut(s) 1114
BssECI CCNNGG 7 cut(s) 71, 265, 506, 614, 1046, 1069, 1075
BssMI GATC 4 cut(s) 179, 912, 985, 1204
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 2 cut(s) 71, 506
Bst2UI CCWGG 7 cut(s) 165, 267, 616, 678, 787, 1048, 1076
Bst4CI ACNGT 4 cut(s) 233, 349, 583, 647
Bst6I CTCTTC 4 cut(s) 24, 186, 833, 882
BstACI GRCGYC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 565
BstC8I GCNNGC 5 cut(s) 48, 1053, 1116, 1120, 1252
BstDEI CTNAG 6 cut(s) 136, 258, 402, 714, 881, 1056
BstENI CCTNNNNNAGG 2 cut(s) 630, 787
BstF5I GGATG 3 cut(s) 40, 859, 1234
BstFNI CGCG 1 cut(s) 1259
BstH2I RGCGCY 2 cut(s) 491, 1135
BstHHI GCGC 3 cut(s) 99, 490, 1134
BstKTI GATC 4 cut(s) 182, 915, 988, 1207
BstMAI GTCTC 3 cut(s) 16, 486, 1016
BstMBI GATC 4 cut(s) 179, 912, 985, 1204
BstMWI GCNNNNNNNGC 4 cut(s) 496, 764, 1057, 1256
BstNI CCWGG 7 cut(s) 165, 267, 616, 678, 787, 1048, 1076
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 7 cut(s) 163, 265, 614, 676, 785, 1046, 1074
BstSFI CTRYAG 2 cut(s) 579, 620
BstUI CGCG 1 cut(s) 1259
BstV1I GCAGC 9 cut(s) 25, 241, 331, 606, 634, 776, 886, 1141, 1196
BstX2I RGATCY 1 cut(s) 179
BstXI CCANNNNNNTGG 2 cut(s) 78, 615
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 5 cut(s) 446, 461, 544, 1068, 1074
BtsCI GGATG 3 cut(s) 40, 859, 1234
BveI ACCTGC 3 cut(s) 1145, 1153, 1186
Cac8I GCNNGC 5 cut(s) 48, 1053, 1116, 1120, 1252
CaiI CAGNNNCTG 1 cut(s) 1145
CfoI GCGC 3 cut(s) 99, 490, 1134
Cfr10I RCCGGY 1 cut(s) 1114
Cfr13I GGNCC 4 cut(s) 68, 262, 459, 635
CseI GACGC 4 cut(s) 131, 191, 410, 998
Csp6I GTAC 2 cut(s) 273, 376
CviAII CATG 4 cut(s) 100, 442, 536, 755
CviQI GTAC 2 cut(s) 273, 376
DdeI CTNAG 6 cut(s) 136, 258, 402, 714, 881, 1056
DpnI GATC 4 cut(s) 181, 914, 987, 1206
DpnII GATC 4 cut(s) 179, 912, 985, 1204
EaeI YGGCCR 2 cut(s) 444, 1066
Eam1104I CTCTTC 4 cut(s) 24, 186, 833, 882
EarI CTCTTC 4 cut(s) 24, 186, 833, 882
Eco130I CCWWGG 2 cut(s) 71, 506
Eco31I GGTCTC 1 cut(s) 16
Eco32I GATATC 1 cut(s) 711
Eco47I GGWCC 3 cut(s) 68, 262, 635
Eco47III AGCGCT 1 cut(s) 1133
Eco57I CTGAAG 2 cut(s) 48, 210
Eco88I CYCGRG 2 cut(s) 594, 730
EcoNI CCTNNNNNAGG 2 cut(s) 630, 787
EcoO109I RGGNCCY 3 cut(s) 262, 459, 635
EcoRII CCWGG 7 cut(s) 163, 265, 614, 676, 785, 1046, 1074
EcoRV GATATC 1 cut(s) 711
EcoT14I CCWWGG 2 cut(s) 71, 506
EcoT22I ATGCAT 1 cut(s) 40
ErhI CCWWGG 2 cut(s) 71, 506
Esp3I CGTCTC 1 cut(s) 1016
FaeI CATG 4 cut(s) 103, 445, 539, 758
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 4 cut(s) 134, 248, 559, 671
FatI CATG 4 cut(s) 99, 441, 535, 754
FauNDI CATATG 2 cut(s) 52, 1005
FbaI TGATCA 1 cut(s) 985
FblI GTMKAC 1 cut(s) 1082
FokI GGATG 3 cut(s) 47, 866, 1241
FspBI CTAG 2 cut(s) 410, 1214
GlaI GCGC 3 cut(s) 98, 489, 1133
GsaI CCCAGC 1 cut(s) 434
GsuI CTGGAG 2 cut(s) 468, 808
HaeII RGCGCY 2 cut(s) 491, 1135
HaeIII GGCC 5 cut(s) 446, 461, 544, 1068, 1074
HapII CCGG 2 cut(s) 1115, 1247
HgaI GACGC 4 cut(s) 131, 191, 410, 998
HhaI GCGC 3 cut(s) 99, 490, 1134
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 4 cut(s) 103, 445, 539, 758
Hin6I GCGC 3 cut(s) 97, 488, 1132
HinP1I GCGC 3 cut(s) 97, 488, 1132
HinfI GANTC 3 cut(s) 385, 818, 1109
HpaII CCGG 2 cut(s) 1115, 1247
HphI GGTGA 1 cut(s) 883
Hpy166II GTNNAC 1 cut(s) 1083
Hpy188I TCNGA 3 cut(s) 715, 823, 837
Hpy188III TCNNGA 9 cut(s) 172, 221, 389, 594, 706, 732, 905, 1025, 1139
Hpy8I GTNNAC 1 cut(s) 1083
HpyCH4III ACNGT 4 cut(s) 233, 349, 583, 647
HpyF10VI GCNNNNNNNGC 4 cut(s) 496, 764, 1057, 1256
HpyF3I CTNAG 6 cut(s) 136, 258, 402, 714, 881, 1056
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 4 cut(s) 103, 445, 539, 758
HspAI GCGC 3 cut(s) 97, 488, 1132
KroI GCCGGC 1 cut(s) 1114
KroNI GCCGGC 1 cut(s) 1116
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 4 cut(s) 179, 912, 985, 1204
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 2 cut(s) 418, 970
Lsp1109I GCAGC 9 cut(s) 25, 241, 331, 606, 634, 776, 886, 1141, 1196
LweI GCATC 6 cut(s) 25, 177, 486, 760, 946, 1219
MaeI CTAG 2 cut(s) 410, 1214
MaeIII GTNAC 2 cut(s) 526, 559
MalI GATC 4 cut(s) 181, 914, 987, 1206
MbiI CCGCTC 2 cut(s) 1122, 1169
MboI GATC 4 cut(s) 179, 912, 985, 1204
MboII GAAGA 8 cut(s) 41, 160, 203, 256, 346, 458, 850, 899
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 731
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 5 cut(s) 151, 517, 700, 962, 1019
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 1 cut(s) 1118
MmeI TCCRAC 2 cut(s) 720, 815
Mox20I TGGCCA 1 cut(s) 446
Mph1103I ATGCAT 1 cut(s) 40
MreI CGCCGGCG 1 cut(s) 1114
MroNI GCCGGC 1 cut(s) 1114
MscI TGGCCA 1 cut(s) 446
MseI TTAA 2 cut(s) 566, 794
Msp20I TGGCCA 1 cut(s) 446
MspCI CTTAAG 1 cut(s) 565
MspI CCGG 2 cut(s) 1115, 1247
MspR9I CCNGG 7 cut(s) 165, 267, 616, 678, 787, 1048, 1076
MvaI CCWGG 7 cut(s) 165, 267, 616, 678, 787, 1048, 1076
MvnI CGCG 1 cut(s) 1259
MwoI GCNNNNNNNGC 4 cut(s) 496, 764, 1057, 1256
NaeI GCCGGC 1 cut(s) 1116
NdeI CATATG 2 cut(s) 52, 1005
NdeII GATC 4 cut(s) 179, 912, 985, 1204
NgoMIV GCCGGC 1 cut(s) 1114
NlaIII CATG 4 cut(s) 103, 445, 539, 758
NlaIV GGNNCC 3 cut(s) 83, 264, 460
NmeAIII GCCGAG 1 cut(s) 1094
NsiI ATGCAT 1 cut(s) 40
NspI RCATGY 1 cut(s) 539
PaeR7I CTCGAG 2 cut(s) 594, 730
PaqCI CACCTGC 1 cut(s) 1145
PciI ACATGT 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 882
PdiI GCCGGC 1 cut(s) 1116
PfeI GAWTC 2 cut(s) 385, 818
PfoI TCCNGGA 1 cut(s) 785
PleI GAGTC 1 cut(s) 1117
PpsI GAGTC 1 cut(s) 1117
PpuMI RGGWCCY 2 cut(s) 262, 635
PscI ACATGT 1 cut(s) 535
Psp5II RGGWCCY 2 cut(s) 262, 635
Psp6I CCWGG 7 cut(s) 163, 265, 614, 676, 785, 1046, 1074
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 7 cut(s) 163, 265, 614, 676, 785, 1046, 1074
PspN4I GGNNCC 3 cut(s) 83, 264, 460
PspPI GGNCC 4 cut(s) 68, 262, 459, 635
PspPPI RGGWCCY 2 cut(s) 262, 635
PstI CTGCAG 1 cut(s) 624
PstNI CAGNNNCTG 1 cut(s) 1145
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 2 cut(s) 274, 377
RsaNI GTAC 2 cut(s) 273, 376
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 2 cut(s) 566, 794
Sau3AI GATC 4 cut(s) 179, 912, 985, 1204
Sau96I GGNCC 4 cut(s) 68, 262, 459, 635
SchI GAGTC 1 cut(s) 1118
ScrFI CCNGG 7 cut(s) 165, 267, 616, 678, 787, 1048, 1076
SduI GDGCHC 1 cut(s) 731
SfaNI GCATC 6 cut(s) 25, 177, 486, 760, 946, 1219
SfcI CTRYAG 2 cut(s) 579, 620
Sfr274I CTCGAG 2 cut(s) 594, 730
SgrAI CRCCGGYG 1 cut(s) 1114
SinI GGWCC 3 cut(s) 68, 262, 635
SlaI CTCGAG 2 cut(s) 594, 730
SmlI CTYRAG 4 cut(s) 565, 594, 730, 1025
SmoI CTYRAG 4 cut(s) 565, 594, 730, 1025
Sse9I AATT 5 cut(s) 151, 517, 700, 962, 1019
SsiI CCGC 4 cut(s) 1038, 1122, 1148, 1167
SspMI CTAG 2 cut(s) 410, 1214
StyD4I CCNGG 7 cut(s) 163, 265, 614, 676, 785, 1046, 1074
StyI CCWWGG 2 cut(s) 71, 506
TaaI ACNGT 4 cut(s) 233, 349, 583, 647
TaqI TCGA 5 cut(s) 494, 595, 731, 915, 1197
TasI AATT 5 cut(s) 151, 517, 700, 962, 1019
TauI GCSGC 2 cut(s) 1041, 1169
TfiI GAWTC 2 cut(s) 385, 818
Tru1I TTAA 2 cut(s) 566, 794
Tru9I TTAA 2 cut(s) 566, 794
TseI GCWGC 9 cut(s) 13, 254, 319, 619, 622, 764, 899, 1129, 1209
TspDTI ATGAA 2 cut(s) 17, 116
TspGWI ACGGA 2 cut(s) 964, 1232
Vha464I CTTAAG 1 cut(s) 565
VpaK11BI GGWCC 3 cut(s) 68, 262, 635
XagI CCTNNNNNAGG 2 cut(s) 630, 787
XapI RAATTY 3 cut(s) 517, 700, 1019
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 1098
XhoI CTCGAG 2 cut(s) 594, 730
XmiI GTMKAC 1 cut(s) 1082
XspI CTAG 2 cut(s) 410, 1214
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.