Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8432707.1

Orthogroup ID

OG0006575

Physical Location & Seq

Genomic Coordinates Forward (+)

284 .. 1357

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8432707.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgaaggagaggcagcgttggagacctgaagaggatgcattgttgcgtgcatatgtgaaacaatatggaccaagggagtggaaccttgtatcacagcgcatgaacacacccctaaacagggacgccaaatcttgcttagaaaggtggaagaattatctaaaaccaggcatcaagaaaggatctcttactgaagaggaacagcgtcttgtcatttgccttcaagagaaacacggtaataaatggaagaaaatcgctgctgaggtccctggtcgtactgctaaaagattaggcaagtggtgggaagtgttcaaagagaagcagcagagagaacagaagaacaacaagacagttgttcagcctattgaggagggcaagtacgataggattcttgaaacttttgctgagaagctagtgaaggagcgtccagccccagcttatctcatggccacttccaaaggggcctttcttcacaacgaagtgtctccagcgccctcgatgcttcctccttggctttcaaattcaaatgttacctcacatgtcaggccaccatctccttctgttaccttaagtctgtcccctacagttgcaccctctcgagcctctcctccaatcccctggctgcagcctgatagaggacctgaaaacagtagttttgtattgagcaatctgcctcctcctggttcagtcccttgtggagaaaatttcgtgatatctgagttggtggagtgctcgagagagttggaggaagtgcatcatgcttgggcagcacataaaaaggaagcctcctggaggttaagaagggtagagttgcaactggaatcggagaaggcttgtcggaagagggagaaaatggatgagattgaggcgaaggtgaaggctctaagggaagagcagaaggctgctctggataggatcgaagcagaatacagggaacaaatagctggactacggagagatgccgaattgaaggagcaaaagttggctgatcaatggtctgcaaagcatatgcgtctcactaaatttcttgagcagatgggcggcagacccaggcttgctgagcctaatggccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

357

Amino Acids

41.24

Weight (kDa)

9.54

Isoelectric Point (pI)

64.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37630
fragaria_vesca	FvH4_2g38350 FvH4_2g38350 FvH4_6g13640 FvH4_6g13640 FvH4_6g13640
malus_domestica	MD04G1129500.v1.1 MD12G1142500.v1.1
prunus_persica	Prupe.6G255800_v2.0.a1 Prupe.6G255800_v2.0.a1 Prupe.6G255800_v2.0.a1 Prupe.6G255800_v2.0.a1
pyrus_communis	pycom04g11760 pycom12g13740
rosa_chinensis	RchiOBHm_Chr3g0466491
rosa_laevigata	RLG00000024567
rosa_multiflora	Rmu_co8432707.1_g000001 Rmu_sc0003332.1_g000018 Rmu_sc0022726.1_g000008
rosa_roxburghii	Rroxscaffold_6G00414420
rosa_rugosa	Rorug03G0082300 Rorug03G0082300
rosa_samantha	Rh3AG129000 Rh3BG150400 Rh3DG151000
rosa_wichuraiana	Rw3G012200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1038
AclWI	GGATC	2 cut(s)	187, 920
AcoI	YGGCCR	2 cut(s)	444, 1066
AcsI	RAATTY	3 cut(s)	517, 700, 1019
AcuI	CTGAAG	2 cut(s)	48, 210
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	274, 377
AfiI	CCNNNNNNNGG	5 cut(s)	117, 118, 632, 677, 789
AflII	CTTAAG	1 cut(s)	565
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	6 cut(s)	221, 310, 392, 516, 522, 967
AjnI	CCWGG	6 cut(s)	163, 265, 614, 676, 785, 1046
AluBI	AGCT	3 cut(s)	409, 434, 941
AluI	AGCT	3 cut(s)	409, 434, 941
Alw21I	GWGCWC	1 cut(s)	731
Alw26I	GTCTC	3 cut(s)	16, 486, 1016
AlwI	GGATC	2 cut(s)	187, 920
Ama87I	CYCGRG	2 cut(s)	594, 730
AoxI	GGCC	4 cut(s)	444, 459, 542, 1066
ApeKI	GCWGC	7 cut(s)	13, 254, 319, 619, 622, 764, 899
ApoI	RAATTY	3 cut(s)	517, 700, 1019
AspLEI	GCGC	2 cut(s)	99, 490
AspS9I	GGNCC	4 cut(s)	68, 262, 459, 635
AsuHPI	GGTGA	1 cut(s)	883
AvaI	CYCGRG	2 cut(s)	594, 730
AvaII	GGWCC	3 cut(s)	68, 262, 635
BalI	TGGCCA	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	731
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	7 cut(s)	25, 241, 331, 606, 634, 776, 886
BccI	CCATC	2 cut(s)	556, 1027
BciT130I	CCWGG	6 cut(s)	165, 267, 616, 678, 787, 1048
BclI	TGATCA	1 cut(s)	985
BcoDI	GTCTC	3 cut(s)	16, 486, 1016
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	2 cut(s)	579, 620
BfoI	RGCGCY	1 cut(s)	491
BfrI	CTTAAG	1 cut(s)	565
BisI	GCNGC	8 cut(s)	14, 255, 320, 620, 623, 765, 900, 1039
BlpI	GCTNAGC	1 cut(s)	1056
BlsI	GCNGC	8 cut(s)	15, 256, 321, 621, 624, 766, 901, 1040
Bme1390I	CCNGG	6 cut(s)	165, 267, 616, 678, 787, 1048
Bme18I	GGWCC	3 cut(s)	68, 262, 635
BmeT110I	CYCGRG	2 cut(s)	594, 730
BmgT120I	GGNCC	4 cut(s)	68, 262, 459, 635
BmiI	GGNNCC	3 cut(s)	83, 264, 460
BmrFI	CCNGG	6 cut(s)	165, 267, 616, 678, 787, 1048
BmsI	GCATC	5 cut(s)	25, 177, 486, 760, 946
BpmI	CTGGAG	2 cut(s)	468, 808
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	1056
BpuEI	CTTGAG	1 cut(s)	1046
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	5 cut(s)	71, 265, 506, 614, 1046
BsaXI	ACNNNNNCTCC	4 cut(s)	359, 389, 962, 992
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 118, 632, 677, 789
Bse118I	RCCGGY	1 cut(s)	1068
Bse1I	ACTGG	1 cut(s)	819
BseBI	CCWGG	6 cut(s)	165, 267, 616, 678, 787, 1048
BseDI	CCNNGG	5 cut(s)	71, 265, 506, 614, 1046
BseGI	GGATG	2 cut(s)	40, 859
BseLI	CCNNNNNNNGG	5 cut(s)	117, 118, 632, 677, 789
BseMII	CTCAG	4 cut(s)	249, 393, 705, 1047
BseNI	ACTGG	1 cut(s)	819
BseRI	GAGGAG	3 cut(s)	380, 594, 663
BseXI	GCAGC	7 cut(s)	25, 241, 331, 606, 634, 776, 886
BseYI	CCCAGC	1 cut(s)	430
BshFI	GGCC	4 cut(s)	446, 461, 544, 1068
BsiHKAI	GWGCWC	1 cut(s)	731
BsiHKCI	CYCGRG	2 cut(s)	594, 730
BsiSI	CCGG	1 cut(s)	1069
BslFI	GGGAC	4 cut(s)	134, 248, 559, 671
BslI	CCNNNNNNNGG	5 cut(s)	117, 118, 632, 677, 789
BsmAI	GTCTC	3 cut(s)	16, 486, 1016
BsmBI	CGTCTC	1 cut(s)	1016
BsmFI	GGGAC	4 cut(s)	134, 248, 559, 671
BsnI	GGCC	4 cut(s)	446, 461, 544, 1068
Bso31I	GGTCTC	1 cut(s)	16
BsoBI	CYCGRG	2 cut(s)	594, 730
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp143I	GATC	3 cut(s)	179, 912, 985
Bsp1720I	GCTNAGC	1 cut(s)	1056
BspACI	CCGC	1 cut(s)	1038
BspANI	GGCC	4 cut(s)	446, 461, 544, 1068
BspCNI	CTCAG	4 cut(s)	250, 394, 706, 1048
BspLI	GGNNCC	3 cut(s)	83, 264, 460
BspMAI	CTGCAG	1 cut(s)	624
BspPI	GGATC	2 cut(s)	187, 920
BspQI	GCTCTTC	1 cut(s)	882
BspTI	CTTAAG	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	1068
BsrI	ACTGG	1 cut(s)	819
BssAI	RCCGGY	1 cut(s)	1068
BssECI	CCNNGG	5 cut(s)	71, 265, 506, 614, 1046
BssMI	GATC	3 cut(s)	179, 912, 985
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	71, 506
Bst2UI	CCWGG	6 cut(s)	165, 267, 616, 678, 787, 1048
Bst4CI	ACNGT	4 cut(s)	233, 349, 583, 647
Bst6I	CTCTTC	4 cut(s)	24, 186, 833, 882
BstACI	GRCGYC	1 cut(s)	123
BstAFI	CTTAAG	1 cut(s)	565
BstC8I	GCNNGC	2 cut(s)	48, 1053
BstDEI	CTNAG	6 cut(s)	136, 258, 402, 714, 881, 1056
BstENI	CCTNNNNNAGG	2 cut(s)	630, 787
BstF5I	GGATG	2 cut(s)	40, 859
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	2 cut(s)	99, 490
BstKTI	GATC	3 cut(s)	182, 915, 988
BstMAI	GTCTC	3 cut(s)	16, 486, 1016
BstMBI	GATC	3 cut(s)	179, 912, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	496, 764, 1057
BstNI	CCWGG	6 cut(s)	165, 267, 616, 678, 787, 1048
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	6 cut(s)	163, 265, 614, 676, 785, 1046
BstSFI	CTRYAG	2 cut(s)	579, 620
BstV1I	GCAGC	7 cut(s)	25, 241, 331, 606, 634, 776, 886
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	2 cut(s)	78, 615
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	4 cut(s)	446, 461, 544, 1068
BtsCI	GGATG	2 cut(s)	40, 859
Cac8I	GCNNGC	2 cut(s)	48, 1053
CfoI	GCGC	2 cut(s)	99, 490
Cfr10I	RCCGGY	1 cut(s)	1068
Cfr13I	GGNCC	4 cut(s)	68, 262, 459, 635
CseI	GACGC	4 cut(s)	131, 191, 410, 998
Csp6I	GTAC	2 cut(s)	273, 376
CviAII	CATG	4 cut(s)	100, 442, 536, 755
CviQI	GTAC	2 cut(s)	273, 376
DdeI	CTNAG	6 cut(s)	136, 258, 402, 714, 881, 1056
DpnI	GATC	3 cut(s)	181, 914, 987
DpnII	GATC	3 cut(s)	179, 912, 985
EaeI	YGGCCR	2 cut(s)	444, 1066
Eam1104I	CTCTTC	4 cut(s)	24, 186, 833, 882
EarI	CTCTTC	4 cut(s)	24, 186, 833, 882
Eco130I	CCWWGG	2 cut(s)	71, 506
Eco31I	GGTCTC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	3 cut(s)	68, 262, 635
Eco57I	CTGAAG	2 cut(s)	48, 210
Eco88I	CYCGRG	2 cut(s)	594, 730
EcoNI	CCTNNNNNAGG	2 cut(s)	630, 787
EcoO109I	RGGNCCY	3 cut(s)	262, 459, 635
EcoRII	CCWGG	6 cut(s)	163, 265, 614, 676, 785, 1046
EcoRV	GATATC	1 cut(s)	711
EcoT14I	CCWWGG	2 cut(s)	71, 506
EcoT22I	ATGCAT	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	71, 506
Esp3I	CGTCTC	1 cut(s)	1016
FaeI	CATG	4 cut(s)	103, 445, 539, 758
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	4 cut(s)	134, 248, 559, 671
FatI	CATG	4 cut(s)	99, 441, 535, 754
FauNDI	CATATG	2 cut(s)	52, 1005
FbaI	TGATCA	1 cut(s)	985
Fnu4HI	GCNGC	8 cut(s)	14, 255, 320, 620, 623, 765, 900, 1039
FokI	GGATG	2 cut(s)	47, 866
Fsp4HI	GCNGC	8 cut(s)	14, 255, 320, 620, 623, 765, 900, 1039
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	2 cut(s)	98, 489
GluI	GCNGC	8 cut(s)	14, 255, 320, 620, 623, 765, 900, 1039
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	2 cut(s)	468, 808
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	4 cut(s)	446, 461, 544, 1068
HapII	CCGG	1 cut(s)	1069
HgaI	GACGC	4 cut(s)	131, 191, 410, 998
HhaI	GCGC	2 cut(s)	99, 490
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	103, 445, 539, 758
Hin6I	GCGC	2 cut(s)	97, 488
HinP1I	GCGC	2 cut(s)	97, 488
HinfI	GANTC	2 cut(s)	385, 818
HpaII	CCGG	1 cut(s)	1069
HphI	GGTGA	1 cut(s)	883
Hpy188I	TCNGA	3 cut(s)	715, 823, 837
Hpy188III	TCNNGA	8 cut(s)	172, 221, 389, 594, 706, 732, 905, 1025
HpyAV	CCTTC	9 cut(s)	227, 409, 564, 792, 820, 862, 868, 889, 961
HpyCH4III	ACNGT	4 cut(s)	233, 349, 583, 647
HpyCH4V	TGCA	7 cut(s)	38, 50, 587, 622, 751, 811, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	496, 764, 1057
HpyF3I	CTNAG	6 cut(s)	136, 258, 402, 714, 881, 1056
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	103, 445, 539, 758
HspAI	GCGC	2 cut(s)	97, 488
Ksp22I	TGATCA	1 cut(s)	985
Kzo9I	GATC	3 cut(s)	179, 912, 985
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	2 cut(s)	418, 970
Lsp1109I	GCAGC	7 cut(s)	25, 241, 331, 606, 634, 776, 886
LweI	GCATC	5 cut(s)	25, 177, 486, 760, 946
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	2 cut(s)	526, 559
MalI	GATC	3 cut(s)	181, 914, 987
MboI	GATC	3 cut(s)	179, 912, 985
MboII	GAAGA	8 cut(s)	41, 160, 203, 256, 346, 458, 850, 899
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	731
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	5 cut(s)	151, 517, 700, 962, 1019
MluNI	TGGCCA	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	720, 815
Mox20I	TGGCCA	1 cut(s)	446
Mph1103I	ATGCAT	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	2 cut(s)	566, 794
Msp20I	TGGCCA	1 cut(s)	446
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	1 cut(s)	1069
MspR9I	CCNGG	6 cut(s)	165, 267, 616, 678, 787, 1048
MvaI	CCWGG	6 cut(s)	165, 267, 616, 678, 787, 1048
MwoI	GCNNNNNNNGC	3 cut(s)	496, 764, 1057
NdeI	CATATG	2 cut(s)	52, 1005
NdeII	GATC	3 cut(s)	179, 912, 985
NlaIII	CATG	4 cut(s)	103, 445, 539, 758
NlaIV	GGNNCC	3 cut(s)	83, 264, 460
NsiI	ATGCAT	1 cut(s)	40
NspI	RCATGY	1 cut(s)	539
PaeR7I	CTCGAG	2 cut(s)	594, 730
PciI	ACATGT	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	882
PfeI	GAWTC	2 cut(s)	385, 818
PfoI	TCCNGGA	1 cut(s)	785
PkrI	GCNGC	8 cut(s)	15, 256, 321, 621, 624, 766, 901, 1040
PpuMI	RGGWCCY	2 cut(s)	262, 635
PscI	ACATGT	1 cut(s)	535
Psp5II	RGGWCCY	2 cut(s)	262, 635
Psp6I	CCWGG	6 cut(s)	163, 265, 614, 676, 785, 1046
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	6 cut(s)	163, 265, 614, 676, 785, 1046
PspN4I	GGNNCC	3 cut(s)	83, 264, 460
PspPI	GGNCC	4 cut(s)	68, 262, 459, 635
PspPPI	RGGWCCY	2 cut(s)	262, 635
PstI	CTGCAG	1 cut(s)	624
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	2 cut(s)	274, 377
RsaNI	GTAC	2 cut(s)	273, 376
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	2 cut(s)	566, 794
SatI	GCNGC	8 cut(s)	14, 255, 320, 620, 623, 765, 900, 1039
Sau3AI	GATC	3 cut(s)	179, 912, 985
Sau96I	GGNCC	4 cut(s)	68, 262, 459, 635
ScrFI	CCNGG	6 cut(s)	165, 267, 616, 678, 787, 1048
SduI	GDGCHC	1 cut(s)	731
SfaNI	GCATC	5 cut(s)	25, 177, 486, 760, 946
SfcI	CTRYAG	2 cut(s)	579, 620
Sfr274I	CTCGAG	2 cut(s)	594, 730
SinI	GGWCC	3 cut(s)	68, 262, 635
SlaI	CTCGAG	2 cut(s)	594, 730
SmlI	CTYRAG	4 cut(s)	565, 594, 730, 1025
SmoI	CTYRAG	4 cut(s)	565, 594, 730, 1025
Sse9I	AATT	5 cut(s)	151, 517, 700, 962, 1019
SsiI	CCGC	1 cut(s)	1038
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	6 cut(s)	163, 265, 614, 676, 785, 1046
StyI	CCWWGG	2 cut(s)	71, 506
TaaI	ACNGT	4 cut(s)	233, 349, 583, 647
TaqI	TCGA	4 cut(s)	494, 595, 731, 915
TasI	AATT	5 cut(s)	151, 517, 700, 962, 1019
TauI	GCSGC	1 cut(s)	1041
TfiI	GAWTC	2 cut(s)	385, 818
Tru1I	TTAA	2 cut(s)	566, 794
Tru9I	TTAA	2 cut(s)	566, 794
TseI	GCWGC	7 cut(s)	13, 254, 319, 619, 622, 764, 899
TspDTI	ATGAA	2 cut(s)	17, 116
TspGWI	ACGGA	1 cut(s)	964
Vha464I	CTTAAG	1 cut(s)	565
VpaK11BI	GGWCC	3 cut(s)	68, 262, 635
XagI	CCTNNNNNAGG	2 cut(s)	630, 787
XapI	RAATTY	3 cut(s)	517, 700, 1019
XceI	RCATGY	1 cut(s)	539
XhoI	CTCGAG	2 cut(s)	594, 730
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.