Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006575

Physical Location & Seq

Genomic Coordinates Reverse (-)

16220578 .. 16221642

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAAGGAGAGACAACGTTGGAGTGCTGAAGAGGACGCTTTGTTAAGTGCATATGTGAAGCAATATGGGCCAAGGGAGTGGAACCTTGTATCACAGCGCATGAACACACCCCTAGACAGGGATGCCAAATCTTGCTTAGAAAGGTGGAAGAATTATCTCAAACCTGGCATTAAGAAAGGATCCCTAACGGAAGAGGAGCAGCGCCTTGTCATTTGTCTTCAAGCCAAACACGGAAATAAGTGGAAGAAAATTGCTGCTGAAGTCCCTGGTCGTACGGCTAAGAGATTGGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAGAATAACAAGACAGCTGACCCGATTGTGGAGGGTAAATACGATAGAATTCTTGAAACTTTTGCTGAGAAGTTAGTGAAGGAGCGTGCTGCCCCAACCTATCTCATGGCTACTTCAAATGGTGCCTATCTTCATACTGAAACGTCTTCTCCAGCACCAACGATTCTTCCTCCTTGGCTTTCTAATTCCAATGTGTCCTCCAATGTGAGGCCACCATCTCCTTCTGTTACCCTGAGTCTGTCCTCGGCAGTGGCACCCTCTCCTCCAATCCCTTGGCTGCAGCAGGATAGAGGATCAGATAGTAGTTTTGCTTTGGGAAATTTGCCACATCATGGGGTAGTTCCTGCTTCTGGGGAGAACCTAGTGATATCCGAGTTGGTGGAGTGCTCCAGAGAGTTGGAAGAAGTGCACCGTGCTTGGGCAGCGCATAAGAAGGAAGCGTCGTGGAGGTTAAGAAGGGTGGAGTTGCAACTGGATTCAGAGAAGGCTAGTCGGAGGAGGGAGAAGATGGAAGAGATTGAGGCGAAGGTAAAGGCTCTAAGGGAAGAGCAAAACGCTGCTCTTGACAGGATCGAAGCAGAATACAGGGAACAATTAGCAGGGCTAAGGAGAGATGCAGAAGCGAAGGAGCAGAAGTTGGCTGAGCAATGGGCCGCAAAGCATTCGCGTCTCTCCAAGTTTCTCGAGCAGATGGGAGGCAGACCAAAGATTGCCGAGCCTAATGGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

355

Amino Acids

40.37

Weight (kDa)

9.41

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	4 - 53	1.1e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	7 - 67	2.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	59 - 94	3.4e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	63 - 111	5e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37630
fragaria_vesca	FvH4_2g38350 FvH4_2g38350 FvH4_6g13640 FvH4_6g13640 FvH4_6g13640
malus_domestica	MD04G1129500.v1.1 MD12G1142500.v1.1
prunus_persica	Prupe.6G255800_v2.0.a1 Prupe.6G255800_v2.0.a1 Prupe.6G255800_v2.0.a1 Prupe.6G255800_v2.0.a1
pyrus_communis	pycom04g11760 pycom12g13740
rosa_chinensis	RchiOBHm_Chr3g0466491
rosa_laevigata	RLG00000024567
rosa_multiflora	Rmu_co8432707.1_g000001 Rmu_sc0003332.1_g000018 Rmu_sc0022726.1_g000008
rosa_roxburghii	Rroxscaffold_6G00414420
rosa_rugosa	Rorug03G0082300 Rorug03G0082300
rosa_samantha	Rh3AG129000 Rh3BG150400 Rh3DG151000
rosa_wichuraiana	Rw3G012200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	455, 586
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccII	CGCG	1 cut(s)	1000
AciI	CCGC	1 cut(s)	987
AclI	AACGTT	1 cut(s)	16
AclWI	GGATC	4 cut(s)	174, 187, 634, 911
AcsI	RAATTY	2 cut(s)	381, 652
AcuI	CTGAAG	2 cut(s)	48, 279
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	7 cut(s)	117, 118, 361, 540, 665, 683, 751
AgsI	TTSAA	4 cut(s)	221, 310, 389, 450
AjnI	CCWGG	2 cut(s)	163, 265
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw21I	GWGCWC	2 cut(s)	722, 744
Alw26I	GTCTC	2 cut(s)	4, 1007
Alw44I	GTGCAC	1 cut(s)	740
AlwI	GGATC	4 cut(s)	174, 187, 634, 911
Ama87I	CYCGRG	1 cut(s)	1016
AoxI	GGCC	3 cut(s)	68, 542, 984
ApaLI	GTGCAC	1 cut(s)	740
ApeKI	GCWGC	8 cut(s)	199, 254, 319, 422, 610, 613, 755, 890
ApoI	RAATTY	2 cut(s)	381, 652
AspLEI	GCGC	3 cut(s)	99, 204, 760
AspS9I	GGNCC	2 cut(s)	68, 984
AvaI	CYCGRG	1 cut(s)	1016
BaeGI	GKGCMC	1 cut(s)	744
BamHI	GGATCC	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	455, 586
BbsI	GAAGAC	2 cut(s)	209, 471
Bbv12I	GWGCWC	2 cut(s)	722, 744
BbvI	GCAGC	8 cut(s)	211, 241, 331, 409, 597, 625, 767, 877
BccI	CCATC	3 cut(s)	556, 835, 1018
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	978, 1012
BciT130I	CCWGG	2 cut(s)	165, 267
BcoDI	GTCTC	2 cut(s)	4, 1007
BfaI	CTAG	3 cut(s)	113, 695, 822
BfmI	CTRYAG	1 cut(s)	611
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	9 cut(s)	200, 255, 320, 423, 611, 614, 756, 891, 987
BlpI	GCTNAGC	1 cut(s)	975
BlsI	GCNGC	9 cut(s)	201, 256, 321, 424, 612, 615, 757, 892, 988
Bme1390I	CCNGG	2 cut(s)	165, 267
BmeT110I	CYCGRG	1 cut(s)	1016
BmgT120I	GGNCC	2 cut(s)	68, 984
BmiI	GGNNCC	4 cut(s)	83, 181, 457, 588
BmrFI	CCNGG	2 cut(s)	165, 267
BmsI	GCATC	2 cut(s)	112, 937
BpiI	GAAGAC	2 cut(s)	209, 471
BpmI	CTGGAG	2 cut(s)	468, 706
Bpu10I	CCTNAGC	1 cut(s)	938
Bpu1102I	GCTNAGC	1 cut(s)	975
BsaJI	CCNNGG	5 cut(s)	71, 265, 506, 576, 605
BsaXI	ACNNNNNCTCC	4 cut(s)	466, 496, 953, 983
Bsc4I	CCNNNNNNNGG	7 cut(s)	117, 118, 361, 540, 665, 683, 751
Bse1I	ACTGG	1 cut(s)	810
Bse3DI	GCAATG	1 cut(s)	986
BseBI	CCWGG	2 cut(s)	165, 267
BseDI	CCNNGG	5 cut(s)	71, 265, 506, 576, 605
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	7 cut(s)	117, 118, 361, 540, 665, 683, 751
BseMI	GCAATG	1 cut(s)	986
BseMII	CTCAG	3 cut(s)	390, 557, 966
BseNI	ACTGG	1 cut(s)	810
BseRI	GAGGAG	3 cut(s)	209, 585, 844
BseSI	GKGCMC	1 cut(s)	744
BseXI	GCAGC	8 cut(s)	211, 241, 331, 409, 597, 625, 767, 877
Bsh1236I	CGCG	1 cut(s)	1000
BshFI	GGCC	3 cut(s)	70, 544, 986
BshNI	GGYRCC	2 cut(s)	455, 586
BsiHKAI	GWGCWC	2 cut(s)	722, 744
BsiHKCI	CYCGRG	1 cut(s)	1016
BsiWI	CGTACG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	7 cut(s)	117, 118, 361, 540, 665, 683, 751
BsmAI	GTCTC	2 cut(s)	4, 1007
BsmBI	CGTCTC	1 cut(s)	1007
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	3 cut(s)	70, 544, 986
BsoBI	CYCGRG	1 cut(s)	1016
Bsp1286I	GDGCHC	2 cut(s)	722, 744
Bsp143I	GATC	3 cut(s)	179, 626, 903
Bsp1720I	GCTNAGC	1 cut(s)	975
BspACI	CCGC	1 cut(s)	987
BspANI	GGCC	3 cut(s)	70, 544, 986
BspCNI	CTCAG	3 cut(s)	391, 558, 967
BspFNI	CGCG	1 cut(s)	1000
BspLI	GGNNCC	4 cut(s)	83, 181, 457, 588
BspMAI	CTGCAG	1 cut(s)	615
BspPI	GGATC	4 cut(s)	174, 187, 634, 911
BspQI	GCTCTTC	1 cut(s)	873
BspT107I	GGYRCC	2 cut(s)	455, 586
BsrDI	GCAATG	1 cut(s)	986
BsrI	ACTGG	1 cut(s)	810
BssECI	CCNNGG	5 cut(s)	71, 265, 506, 576, 605
BssMI	GATC	3 cut(s)	179, 626, 903
BssT1I	CCWWGG	3 cut(s)	71, 506, 605
Bst2UI	CCWGG	2 cut(s)	165, 267
Bst4CI	ACNGT	1 cut(s)	746
Bst6I	CTCTTC	4 cut(s)	24, 186, 840, 873
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	7 cut(s)	136, 279, 399, 566, 872, 938, 975
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	1000
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	3 cut(s)	99, 204, 760
BstKTI	GATC	3 cut(s)	182, 629, 906
BstMAI	GTCTC	2 cut(s)	4, 1007
BstMBI	GATC	3 cut(s)	179, 626, 903
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 755
BstNI	CCWGG	2 cut(s)	165, 267
BstSCI	CCNGG	2 cut(s)	163, 265
BstSFI	CTRYAG	1 cut(s)	611
BstSLI	GKGCMC	1 cut(s)	744
BstUI	CGCG	1 cut(s)	1000
BstV1I	GCAGC	8 cut(s)	211, 241, 331, 409, 597, 625, 767, 877
BstV2I	GAAGAC	2 cut(s)	209, 471
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	3 cut(s)	78, 606, 730
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	70, 544, 986
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	1 cut(s)	420
CfoI	GCGC	3 cut(s)	99, 204, 760
Cfr13I	GGNCC	2 cut(s)	68, 984
CseI	GACGC	3 cut(s)	44, 762, 989
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	3 cut(s)	100, 439, 665
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	7 cut(s)	136, 279, 399, 566, 872, 938, 975
DpnI	GATC	3 cut(s)	181, 628, 905
DpnII	GATC	3 cut(s)	179, 626, 903
Eam1104I	CTCTTC	4 cut(s)	24, 186, 840, 873
EarI	CTCTTC	4 cut(s)	24, 186, 840, 873
Eco130I	CCWWGG	3 cut(s)	71, 506, 605
Eco32I	GATATC	1 cut(s)	702
Eco57I	CTGAAG	2 cut(s)	48, 279
Eco88I	CYCGRG	1 cut(s)	1016
EcoRI	GAATTC	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	163, 265
EcoRV	GATATC	1 cut(s)	702
EcoT14I	CCWWGG	3 cut(s)	71, 506, 605
ErhI	CCWWGG	3 cut(s)	71, 506, 605
Esp3I	CGTCTC	1 cut(s)	1007
FaeI	CATG	3 cut(s)	103, 442, 668
FaiI	YATR	8 cut(s)	52, 54, 66, 101, 440, 468, 666, 762
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	99, 438, 664
FauNDI	CATATG	1 cut(s)	52
Fnu4HI	GCNGC	9 cut(s)	200, 255, 320, 423, 611, 614, 756, 891, 987
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	9 cut(s)	200, 255, 320, 423, 611, 614, 756, 891, 987
FspBI	CTAG	3 cut(s)	113, 695, 822
GlaI	GCGC	3 cut(s)	98, 203, 759
GluI	GCNGC	9 cut(s)	200, 255, 320, 423, 611, 614, 756, 891, 987
GsuI	CTGGAG	2 cut(s)	468, 706
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	70, 544, 986
HgaI	GACGC	3 cut(s)	44, 762, 989
HhaI	GCGC	3 cut(s)	99, 204, 760
Hin1II	CATG	3 cut(s)	103, 442, 668
Hin6I	GCGC	3 cut(s)	97, 202, 758
HinP1I	GCGC	3 cut(s)	97, 202, 758
HinfI	GANTC	3 cut(s)	496, 568, 809
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	4 cut(s)	631, 706, 814, 828
Hpy188III	TCNNGA	4 cut(s)	386, 723, 896, 1016
Hpy8I	GTNNAC	1 cut(s)	742
Hpy99I	CGWCG	1 cut(s)	778
HpyAV	CCTTC	7 cut(s)	406, 564, 760, 783, 811, 853, 952
HpyCH4III	ACNGT	1 cut(s)	746
HpyCH4IV	ACGT	2 cut(s)	16, 476
HpyCH4V	TGCA	5 cut(s)	50, 613, 742, 802, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 755
HpyF3I	CTNAG	7 cut(s)	136, 279, 399, 566, 872, 938, 975
HpySE526I	ACGT	2 cut(s)	16, 476
Hsp92II	CATG	3 cut(s)	103, 442, 668
HspAI	GCGC	3 cut(s)	97, 202, 758
Kzo9I	GATC	3 cut(s)	179, 626, 903
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	4 cut(s)	196, 415, 725, 961
Lsp1109I	GCAGC	8 cut(s)	211, 241, 331, 409, 597, 625, 767, 877
LweI	GCATC	2 cut(s)	112, 937
MaeI	CTAG	3 cut(s)	113, 695, 822
MaeII	ACGT	2 cut(s)	16, 476
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	3 cut(s)	181, 628, 905
MboI	GATC	3 cut(s)	179, 626, 903
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	2 cut(s)	722, 744
MluCI	AATT	6 cut(s)	151, 249, 381, 517, 652, 926
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	2 cut(s)	711, 806
MseI	TTAA	3 cut(s)	44, 171, 785
MspA1I	CMGCKG	1 cut(s)	350
MspR9I	CCNGG	2 cut(s)	165, 267
Mva1269I	GAATGC	1 cut(s)	994
MvaI	CCWGG	2 cut(s)	165, 267
MvnI	CGCG	1 cut(s)	1000
MwoI	GCNNNNNNNGC	2 cut(s)	67, 755
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	3 cut(s)	179, 626, 903
NlaIII	CATG	3 cut(s)	103, 442, 668
NlaIV	GGNNCC	4 cut(s)	83, 181, 457, 588
NmeAIII	GCCGAG	1 cut(s)	557
PaeR7I	CTCGAG	1 cut(s)	1016
PciSI	GCTCTTC	1 cut(s)	873
PctI	GAATGC	1 cut(s)	994
PfeI	GAWTC	2 cut(s)	496, 809
Pfl23II	CGTACG	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	9 cut(s)	201, 256, 321, 424, 612, 615, 757, 892, 988
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
Psp1406I	AACGTT	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	163, 265
PspGI	CCWGG	2 cut(s)	163, 265
PspLI	CGTACG	1 cut(s)	272
PspN4I	GGNNCC	4 cut(s)	83, 181, 457, 588
PspPI	GGNCC	2 cut(s)	68, 984
PstI	CTGCAG	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	3 cut(s)	44, 171, 785
SatI	GCNGC	9 cut(s)	200, 255, 320, 423, 611, 614, 756, 891, 987
Sau3AI	GATC	3 cut(s)	179, 626, 903
Sau96I	GGNCC	2 cut(s)	68, 984
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	2 cut(s)	165, 267
SduI	GDGCHC	2 cut(s)	722, 744
SfaNI	GCATC	2 cut(s)	112, 937
SfcI	CTRYAG	1 cut(s)	611
Sfr274I	CTCGAG	1 cut(s)	1016
SlaI	CTCGAG	1 cut(s)	1016
SmlI	CTYRAG	1 cut(s)	1016
SmoI	CTYRAG	1 cut(s)	1016
Sse9I	AATT	6 cut(s)	151, 249, 381, 517, 652, 926
SsiI	CCGC	1 cut(s)	987
SspMI	CTAG	3 cut(s)	113, 695, 822
StyD4I	CCNGG	2 cut(s)	163, 265
StyI	CCWWGG	3 cut(s)	71, 506, 605
TaaI	ACNGT	1 cut(s)	746
TaiI	ACGT	2 cut(s)	19, 479
TaqI	TCGA	2 cut(s)	906, 1017
TasI	AATT	6 cut(s)	151, 249, 381, 517, 652, 926
TauI	GCSGC	1 cut(s)	989
TfiI	GAWTC	2 cut(s)	496, 809
Tru1I	TTAA	3 cut(s)	44, 171, 785
Tru9I	TTAA	3 cut(s)	44, 171, 785
TscAI	CASTG	1 cut(s)	588
TseI	GCWGC	8 cut(s)	199, 254, 319, 422, 610, 613, 755, 890
TspDTI	ATGAA	3 cut(s)	17, 116, 455
TspGWI	ACGGA	2 cut(s)	203, 246
TspRI	CASTG	1 cut(s)	588
Van91I	CCANNNNNTGG	1 cut(s)	665
VneI	GTGCAC	1 cut(s)	740
XapI	RAATTY	2 cut(s)	381, 652
XhoI	CTCGAG	1 cut(s)	1016
XspI	CTAG	3 cut(s)	113, 695, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.