RLG00000024567
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006575
Physical Location & Seq
Reverse (-)
37109406 .. 37110479
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024567

Sequence Viewer

Length: 1074 bp
ATGAAGGAGAGGCAGCGTTGGAGACCTGAAGAGGATGCATTGTTGCGTGCATATGTGAAACAATATGGACCAAGGGAGTGGAACCTTGTATCACAGCGCATGAACACACCCCTAAACAGGGACGCCAAATCTTGCTTAGAAAGGTGGAAGAATTATCTAAAACCAGGCATCAAGAAAGGATCTCTTACTGAAGAGGAACAGCGTCTTGTCATCTGCCTTCAAGAGAAACACGGTAATAAATGGAAGAAAATCGCTGCTGAGGTCCCTGGTCGTACTGCTAAAAGATTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAGAACAACAAGACAGTTGTTCAGCCTATTGAGGAGGGCAAGTACGATAGGATTCTTGAAACATTTGCTGAGAAGCTAGTGAAGGAGCGTCCAGCCCCAGCTTATCTCATGGCCACCTCCAATGGGGCCTTTCTTCACAACGAAGTGTCTCCAGCGCCATCGATGCTTCCTCCTTGGCTTTCAAATTCAAATGTTACCTCACATGTCAGGCCACCATCTCCTTCTGTTACCTTAAGTCTGTCCCCTACAGTTGCACCCTCTCGAGCCTCTCCTCCAATCCCCTGGCTGCAGCCTGATAGAGGACCCGAAAACAGTAGTTTTGTATTGAGCAATCTGCCTCCTCCTGGTTCAGTCCCTTGTGGAGAAAATTTCGTGATATCTGAGTTGGTGGAGTGCTCGAGAGAGTTGGAAGAAGTGCATCATGCTTGGGCAGCACATAAAAAGGAAGCCTCCTGGAGGTTAAGAAGGGTAGAGTTGCAACTGGAATCGGAGAAGGCTTGTCGAAAGAGGGAGAAAATGGACGAGATTGAGGCGAAGGTGAAGGCTCTAAGGGAAGAGCAGAAGGCTGCTCTGGATAGGATCGAAGCAGAATACAGGGAACAAATAGCTGGACTAAGGAGAGACGCTGAATTGAAGGAGCAAAAGTTGGCTGATCAATGGTCTGCAAAGCATATGCGTCTCACAAAATTTCTTGAGCAGATGGGCGGCAGACCCAGGCTTGCTGAGCCTAATGGCCGGTGA

Protein Analysis

358

Amino Acids

41.23

Weight (kDa)

9.5

Isoelectric Point (pI)

64.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 4 - 53 1.3e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 7 - 64 1.4e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 59 - 94 2.6e-09 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 63 - 110 1.8e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1038
AclWI GGATC 2 cut(s) 187, 920
AcoI YGGCCR 2 cut(s) 444, 1066
AcsI RAATTY 3 cut(s) 517, 700, 1019
AcuI CTGAAG 2 cut(s) 48, 210
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 274, 377
AfiI CCNNNNNNNGG 6 cut(s) 117, 118, 456, 632, 677, 789
AflII CTTAAG 1 cut(s) 565
AflIII ACRYGT 1 cut(s) 535
AgsI TTSAA 6 cut(s) 221, 310, 392, 516, 522, 967
AjnI CCWGG 6 cut(s) 163, 265, 614, 676, 785, 1046
AluBI AGCT 3 cut(s) 409, 434, 941
AluI AGCT 3 cut(s) 409, 434, 941
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 4 cut(s) 16, 486, 948, 1016
AlwI GGATC 2 cut(s) 187, 920
Ama87I CYCGRG 2 cut(s) 594, 730
AoxI GGCC 4 cut(s) 444, 459, 542, 1066
ApeKI GCWGC 7 cut(s) 13, 254, 319, 619, 622, 764, 899
ApoI RAATTY 3 cut(s) 517, 700, 1019
AspLEI GCGC 2 cut(s) 99, 490
AspS9I GGNCC 4 cut(s) 68, 262, 459, 635
AsuHPI GGTGA 1 cut(s) 883
AvaI CYCGRG 2 cut(s) 594, 730
AvaII GGWCC 3 cut(s) 68, 262, 635
BalI TGGCCA 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 731
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 7 cut(s) 25, 241, 331, 606, 634, 776, 886
BccI CCATC 3 cut(s) 499, 556, 1027
BciT130I CCWGG 6 cut(s) 165, 267, 616, 678, 787, 1048
BclI TGATCA 1 cut(s) 985
BcoDI GTCTC 4 cut(s) 16, 486, 948, 1016
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 2 cut(s) 579, 620
BfoI RGCGCY 1 cut(s) 491
BfrI CTTAAG 1 cut(s) 565
BisI GCNGC 8 cut(s) 14, 255, 320, 620, 623, 765, 900, 1039
BlpI GCTNAGC 1 cut(s) 1056
BlsI GCNGC 8 cut(s) 15, 256, 321, 621, 624, 766, 901, 1040
Bme1390I CCNGG 6 cut(s) 165, 267, 616, 678, 787, 1048
Bme18I GGWCC 3 cut(s) 68, 262, 635
BmeT110I CYCGRG 2 cut(s) 594, 730
BmgT120I GGNCC 4 cut(s) 68, 262, 459, 635
BmiI GGNNCC 4 cut(s) 83, 264, 460, 637
BmrFI CCNGG 6 cut(s) 165, 267, 616, 678, 787, 1048
BmsI GCATC 4 cut(s) 25, 177, 486, 760
BpmI CTGGAG 2 cut(s) 468, 808
Bpu10I CCTNAGC 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 1056
BpuEI CTTGAG 1 cut(s) 1046
Bsa29I ATCGAT 1 cut(s) 494
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 5 cut(s) 71, 265, 506, 614, 1046
BsaXI ACNNNNNCTCC 4 cut(s) 359, 389, 962, 992
Bsc4I CCNNNNNNNGG 6 cut(s) 117, 118, 456, 632, 677, 789
Bse118I RCCGGY 1 cut(s) 1068
Bse1I ACTGG 1 cut(s) 819
BseBI CCWGG 6 cut(s) 165, 267, 616, 678, 787, 1048
BseCI ATCGAT 1 cut(s) 494
BseDI CCNNGG 5 cut(s) 71, 265, 506, 614, 1046
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 6 cut(s) 117, 118, 456, 632, 677, 789
BseMII CTCAG 4 cut(s) 249, 393, 705, 1047
BseNI ACTGG 1 cut(s) 819
BseRI GAGGAG 3 cut(s) 380, 594, 663
BseXI GCAGC 7 cut(s) 25, 241, 331, 606, 634, 776, 886
BseYI CCCAGC 1 cut(s) 430
BshFI GGCC 4 cut(s) 446, 461, 544, 1068
BshVI ATCGAT 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 731
BsiHKCI CYCGRG 2 cut(s) 594, 730
BsiSI CCGG 1 cut(s) 1069
BslFI GGGAC 4 cut(s) 134, 248, 559, 671
BslI CCNNNNNNNGG 6 cut(s) 117, 118, 456, 632, 677, 789
BsmAI GTCTC 4 cut(s) 16, 486, 948, 1016
BsmBI CGTCTC 2 cut(s) 948, 1016
BsmFI GGGAC 4 cut(s) 134, 248, 559, 671
BsnI GGCC 4 cut(s) 446, 461, 544, 1068
Bso31I GGTCTC 1 cut(s) 16
BsoBI CYCGRG 2 cut(s) 594, 730
Bsp1286I GDGCHC 1 cut(s) 731
Bsp143I GATC 3 cut(s) 179, 912, 985
Bsp1720I GCTNAGC 1 cut(s) 1056
BspACI CCGC 1 cut(s) 1038
BspANI GGCC 4 cut(s) 446, 461, 544, 1068
BspCNI CTCAG 4 cut(s) 250, 394, 706, 1048
BspDI ATCGAT 1 cut(s) 494
BspLI GGNNCC 4 cut(s) 83, 264, 460, 637
BspMAI CTGCAG 1 cut(s) 624
BspPI GGATC 2 cut(s) 187, 920
BspQI GCTCTTC 1 cut(s) 882
BspTI CTTAAG 1 cut(s) 565
BspTNI GGTCTC 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 1068
BsrI ACTGG 1 cut(s) 819
BssAI RCCGGY 1 cut(s) 1068
BssECI CCNNGG 5 cut(s) 71, 265, 506, 614, 1046
BssMI GATC 3 cut(s) 179, 912, 985
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 2 cut(s) 71, 506
Bst2UI CCWGG 6 cut(s) 165, 267, 616, 678, 787, 1048
Bst4CI ACNGT 4 cut(s) 233, 349, 583, 647
Bst6I CTCTTC 3 cut(s) 24, 186, 882
BstACI GRCGYC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 565
BstC8I GCNNGC 2 cut(s) 48, 1053
BstDEI CTNAG 7 cut(s) 136, 258, 402, 714, 881, 947, 1056
BstENI CCTNNNNNAGG 2 cut(s) 630, 787
BstF5I GGATG 1 cut(s) 40
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 2 cut(s) 99, 490
BstKTI GATC 3 cut(s) 182, 915, 988
BstMAI GTCTC 4 cut(s) 16, 486, 948, 1016
BstMBI GATC 3 cut(s) 179, 912, 985
BstMWI GCNNNNNNNGC 3 cut(s) 496, 764, 1057
BstNI CCWGG 6 cut(s) 165, 267, 616, 678, 787, 1048
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 6 cut(s) 163, 265, 614, 676, 785, 1046
BstSFI CTRYAG 2 cut(s) 579, 620
BstV1I GCAGC 7 cut(s) 25, 241, 331, 606, 634, 776, 886
BstX2I RGATCY 1 cut(s) 179
BstXI CCANNNNNNTGG 2 cut(s) 78, 615
BstYI RGATCY 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 494
BsuRI GGCC 4 cut(s) 446, 461, 544, 1068
BsuTUI ATCGAT 1 cut(s) 494
BtsCI GGATG 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 48, 1053
CfoI GCGC 2 cut(s) 99, 490
Cfr10I RCCGGY 1 cut(s) 1068
Cfr13I GGNCC 4 cut(s) 68, 262, 459, 635
ClaI ATCGAT 1 cut(s) 494
CseI GACGC 5 cut(s) 131, 191, 410, 965, 998
Csp6I GTAC 2 cut(s) 273, 376
CviAII CATG 4 cut(s) 100, 442, 536, 755
CviQI GTAC 2 cut(s) 273, 376
DdeI CTNAG 7 cut(s) 136, 258, 402, 714, 881, 947, 1056
DpnI GATC 3 cut(s) 181, 914, 987
DpnII GATC 3 cut(s) 179, 912, 985
EaeI YGGCCR 2 cut(s) 444, 1066
Eam1104I CTCTTC 3 cut(s) 24, 186, 882
EarI CTCTTC 3 cut(s) 24, 186, 882
Eco130I CCWWGG 2 cut(s) 71, 506
Eco31I GGTCTC 1 cut(s) 16
Eco32I GATATC 1 cut(s) 711
Eco47I GGWCC 3 cut(s) 68, 262, 635
Eco57I CTGAAG 2 cut(s) 48, 210
Eco88I CYCGRG 2 cut(s) 594, 730
EcoNI CCTNNNNNAGG 2 cut(s) 630, 787
EcoO109I RGGNCCY 3 cut(s) 262, 459, 635
EcoRII CCWGG 6 cut(s) 163, 265, 614, 676, 785, 1046
EcoRV GATATC 1 cut(s) 711
EcoT14I CCWWGG 2 cut(s) 71, 506
EcoT22I ATGCAT 1 cut(s) 40
ErhI CCWWGG 2 cut(s) 71, 506
Esp3I CGTCTC 2 cut(s) 948, 1016
FaeI CATG 4 cut(s) 103, 445, 539, 758
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 4 cut(s) 134, 248, 559, 671
FatI CATG 4 cut(s) 99, 441, 535, 754
FauNDI CATATG 2 cut(s) 52, 1005
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 8 cut(s) 14, 255, 320, 620, 623, 765, 900, 1039
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 8 cut(s) 14, 255, 320, 620, 623, 765, 900, 1039
FspBI CTAG 1 cut(s) 410
GlaI GCGC 2 cut(s) 98, 489
GluI GCNGC 8 cut(s) 14, 255, 320, 620, 623, 765, 900, 1039
GsaI CCCAGC 1 cut(s) 434
GsuI CTGGAG 2 cut(s) 468, 808
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 4 cut(s) 446, 461, 544, 1068
HapII CCGG 1 cut(s) 1069
HgaI GACGC 5 cut(s) 131, 191, 410, 965, 998
HhaI GCGC 2 cut(s) 99, 490
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 4 cut(s) 103, 445, 539, 758
Hin6I GCGC 2 cut(s) 97, 488
HinP1I GCGC 2 cut(s) 97, 488
HinfI GANTC 2 cut(s) 385, 818
HpaII CCGG 1 cut(s) 1069
HphI GGTGA 1 cut(s) 883
Hpy188I TCNGA 2 cut(s) 715, 823
Hpy188III TCNNGA 8 cut(s) 172, 221, 389, 594, 706, 732, 905, 1025
HpyAV CCTTC 9 cut(s) 227, 409, 564, 792, 820, 862, 868, 889, 961
HpyCH4III ACNGT 4 cut(s) 233, 349, 583, 647
HpyCH4V TGCA 7 cut(s) 38, 50, 587, 622, 751, 811, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 496, 764, 1057
HpyF3I CTNAG 7 cut(s) 136, 258, 402, 714, 881, 947, 1056
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 4 cut(s) 103, 445, 539, 758
HspAI GCGC 2 cut(s) 97, 488
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 3 cut(s) 179, 912, 985
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 2 cut(s) 418, 970
Lsp1109I GCAGC 7 cut(s) 25, 241, 331, 606, 634, 776, 886
LweI GCATC 4 cut(s) 25, 177, 486, 760
MaeI CTAG 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 526, 559
MalI GATC 3 cut(s) 181, 914, 987
MboI GATC 3 cut(s) 179, 912, 985
MboII GAAGA 8 cut(s) 41, 160, 203, 256, 346, 458, 755, 899
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 731
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 5 cut(s) 151, 517, 700, 962, 1019
MluNI TGGCCA 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 720
Mox20I TGGCCA 1 cut(s) 446
Mph1103I ATGCAT 1 cut(s) 40
MscI TGGCCA 1 cut(s) 446
MseI TTAA 2 cut(s) 566, 794
Msp20I TGGCCA 1 cut(s) 446
MspCI CTTAAG 1 cut(s) 565
MspI CCGG 1 cut(s) 1069
MspR9I CCNGG 6 cut(s) 165, 267, 616, 678, 787, 1048
MvaI CCWGG 6 cut(s) 165, 267, 616, 678, 787, 1048
MwoI GCNNNNNNNGC 3 cut(s) 496, 764, 1057
NdeI CATATG 2 cut(s) 52, 1005
NdeII GATC 3 cut(s) 179, 912, 985
NlaIII CATG 4 cut(s) 103, 445, 539, 758
NlaIV GGNNCC 4 cut(s) 83, 264, 460, 637
NsiI ATGCAT 1 cut(s) 40
NspI RCATGY 1 cut(s) 539
PaeR7I CTCGAG 2 cut(s) 594, 730
PciI ACATGT 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 882
PfeI GAWTC 2 cut(s) 385, 818
PfoI TCCNGGA 1 cut(s) 785
PkrI GCNGC 8 cut(s) 15, 256, 321, 621, 624, 766, 901, 1040
PpuMI RGGWCCY 2 cut(s) 262, 635
PscI ACATGT 1 cut(s) 535
Psp5II RGGWCCY 2 cut(s) 262, 635
Psp6I CCWGG 6 cut(s) 163, 265, 614, 676, 785, 1046
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 6 cut(s) 163, 265, 614, 676, 785, 1046
PspN4I GGNNCC 4 cut(s) 83, 264, 460, 637
PspPI GGNCC 4 cut(s) 68, 262, 459, 635
PspPPI RGGWCCY 2 cut(s) 262, 635
PstI CTGCAG 1 cut(s) 624
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 2 cut(s) 274, 377
RsaNI GTAC 2 cut(s) 273, 376
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 2 cut(s) 566, 794
SatI GCNGC 8 cut(s) 14, 255, 320, 620, 623, 765, 900, 1039
Sau3AI GATC 3 cut(s) 179, 912, 985
Sau96I GGNCC 4 cut(s) 68, 262, 459, 635
ScrFI CCNGG 6 cut(s) 165, 267, 616, 678, 787, 1048
SduI GDGCHC 1 cut(s) 731
SfaNI GCATC 4 cut(s) 25, 177, 486, 760
SfcI CTRYAG 2 cut(s) 579, 620
Sfr274I CTCGAG 2 cut(s) 594, 730
SinI GGWCC 3 cut(s) 68, 262, 635
SlaI CTCGAG 2 cut(s) 594, 730
SmlI CTYRAG 4 cut(s) 565, 594, 730, 1025
SmoI CTYRAG 4 cut(s) 565, 594, 730, 1025
Sse9I AATT 5 cut(s) 151, 517, 700, 962, 1019
SsiI CCGC 1 cut(s) 1038
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 6 cut(s) 163, 265, 614, 676, 785, 1046
StyI CCWWGG 2 cut(s) 71, 506
TaaI ACNGT 4 cut(s) 233, 349, 583, 647
TaqI TCGA 5 cut(s) 494, 595, 731, 835, 915
TasI AATT 5 cut(s) 151, 517, 700, 962, 1019
TauI GCSGC 1 cut(s) 1041
TfiI GAWTC 2 cut(s) 385, 818
Tru1I TTAA 2 cut(s) 566, 794
Tru9I TTAA 2 cut(s) 566, 794
TseI GCWGC 7 cut(s) 13, 254, 319, 619, 622, 764, 899
TspDTI ATGAA 2 cut(s) 17, 116
Vha464I CTTAAG 1 cut(s) 565
VpaK11BI GGWCC 3 cut(s) 68, 262, 635
XagI CCTNNNNNAGG 2 cut(s) 630, 787
XapI RAATTY 3 cut(s) 517, 700, 1019
XceI RCATGY 1 cut(s) 539
XhoI CTCGAG 2 cut(s) 594, 730
XspI CTAG 1 cut(s) 410
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.