Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006575

Physical Location & Seq

Genomic Coordinates Reverse (-)

24863858 .. 24868391

Gene Structure 4534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G255800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAAATGAAGGAGAGACAACGTTGGAGAGCTGAAGAGGACGCTTTGTTACGTGCGTATGTGCAGCAATATGGACCAAGGGAGTGGAACCTTGTATCACAGCGCATGAATACGCCCCTAAACAGGGATGCCAAATCTTGCTTAGAAAGGTGGAAGAATTATCTCAAGCCCGGCATCAAGAAGGGATCACTTACTGAAGAGGAGCAGCGCCTTGTCATTTGCCTTCAAGCCAAACACGGTAATAAATGGAAGAAAATTGCGGCTGAAGTCCCTGGACGTACTGCTAAGAGATTGGGTAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAAAACAATAAGACAGTTGACCCTGTTGACGAGGGTAAATACGATAGAATTCTTGAAACTTTTGCTGAGAAGCTAGTGCAGGAGCGTGCTGCCCCCTCATATCTCATGGCTACTTCAAATGGGTCCTATCTTCATACTGAAACATCTTCTCCTGCGCCTACGATGCTTCCTCCTTGGCTTTCTAATTCCAATGTGACCTCCAATGTCAGGCCACCATCTCCGTCTGTTACCCTGAGTCTGTCTCCAACAGTTGCACCCTCTCCTCCAATCCCTTGGCTGCAGCCTGATAGAGGATCAGATAATAGTATTGTTTTGGGCAATATGCCACATCATGGCTCAGTTCCTGTTTGTGGAGAGAACCTTGTAATATCTGAGTTGGTAGAGTGCTCAAGAGAGTTGGAGGAAGTGCACCGTGCTTGGGCAGCGCATAAAAAGGAAGCATCCTGGAGGTTAAGGAGAGTAGAATTGCAACTGGAATCGGAGAAGGCTTGTCGGAGGAGGGAGAAGATGGAAGAGATTGAGGCGAAGGTGAAAGCTCTAAGGGAAGAGCAGAAGGCTGCTCTGGATAGGATTGAAGCAGAATACAGGGAACAATTAGCAGGGCTAAGGAGAGATGCCGAAGCAAAGGAACAGAAGTTGACCGAGCAATGGGTTGCAAAGCATTTGCGTCTCTCCAAGTTTCTTGACCAGATGGGTGGCAGGCCAAGGCTGGCTGAGCCTAATGGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

357

Amino Acids

41.05

Weight (kDa)

9.34

Isoelectric Point (pI)

62.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37630
fragaria_vesca	FvH4_2g38350 FvH4_2g38350 FvH4_6g13640 FvH4_6g13640 FvH4_6g13640
malus_domestica	MD04G1129500.v1.1 MD12G1142500.v1.1
prunus_persica	Prupe.6G255800_v2.0.a1 Prupe.6G255800_v2.0.a1 Prupe.6G255800_v2.0.a1 Prupe.6G255800_v2.0.a1
pyrus_communis	pycom04g11760 pycom12g13740
rosa_chinensis	RchiOBHm_Chr3g0466491
rosa_laevigata	RLG00000024567
rosa_multiflora	Rmu_co8432707.1_g000001 Rmu_sc0003332.1_g000018 Rmu_sc0022726.1_g000008
rosa_roxburghii	Rroxscaffold_6G00414420
rosa_rugosa	Rorug03G0082300 Rorug03G0082300
rosa_samantha	Rh3AG129000 Rh3BG150400 Rh3DG151000
rosa_wichuraiana	Rw3G012200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	671
AciI	CCGC	1 cut(s)	260
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	2 cut(s)	193, 640
AcoI	YGGCCR	1 cut(s)	1063
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	3 cut(s)	54, 216, 285
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	8 cut(s)	123, 124, 546, 629, 671, 689, 757, 987
AgsI	TTSAA	5 cut(s)	227, 316, 395, 456, 914
AjnI	CCWGG	2 cut(s)	271, 782
AluBI	AGCT	3 cut(s)	32, 412, 875
AluI	AGCT	3 cut(s)	32, 412, 875
Alw21I	GWGCWC	2 cut(s)	728, 750
Alw26I	GTCTC	3 cut(s)	10, 585, 1013
Alw44I	GTGCAC	1 cut(s)	746
AlwI	GGATC	2 cut(s)	193, 640
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	3 cut(s)	548, 1040, 1063
ApaLI	GTGCAC	1 cut(s)	746
ApeKI	GCWGC	8 cut(s)	64, 205, 325, 428, 616, 619, 761, 896
ApoI	RAATTY	1 cut(s)	387
AspLEI	GCGC	4 cut(s)	105, 210, 496, 766
AspS9I	GGNCC	2 cut(s)	74, 462
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	880
AvaII	GGWCC	2 cut(s)	74, 462
BaeGI	GKGCMC	1 cut(s)	750
Bbv12I	GWGCWC	2 cut(s)	728, 750
BbvI	GCAGC	8 cut(s)	76, 217, 337, 415, 603, 631, 773, 883
BccI	CCATC	3 cut(s)	562, 841, 1024
BciT130I	CCWGG	2 cut(s)	273, 784
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	3 cut(s)	10, 585, 1013
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	1 cut(s)	617
BfoI	RGCGCY	1 cut(s)	211
BisI	GCNGC	9 cut(s)	65, 206, 261, 326, 429, 617, 620, 762, 897
BlpI	GCTNAGC	1 cut(s)	1053
BlsI	GCNGC	9 cut(s)	66, 207, 262, 327, 430, 618, 621, 763, 898
Bme1390I	CCNGG	3 cut(s)	171, 273, 784
Bme18I	GGWCC	2 cut(s)	74, 462
BmgT120I	GGNCC	2 cut(s)	74, 462
BmiI	GGNNCC	2 cut(s)	89, 463
BmrFI	CCNGG	3 cut(s)	171, 273, 784
BmsI	GCATC	5 cut(s)	118, 183, 492, 788, 943
BplI	GAGNNNNNCTC	2 cut(s)	565, 597
BpmI	CTGGAG	1 cut(s)	805
Bpu10I	CCTNAGC	1 cut(s)	944
Bpu1102I	GCTNAGC	1 cut(s)	1053
BpuEI	CTTGAG	2 cut(s)	149, 712
BpuMI	CCSGG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	5 cut(s)	77, 271, 512, 611, 1043
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	8 cut(s)	123, 124, 546, 629, 671, 689, 757, 987
Bse118I	RCCGGY	1 cut(s)	1065
Bse1I	ACTGG	1 cut(s)	816
Bse3DI	GCAATG	1 cut(s)	992
BseBI	CCWGG	2 cut(s)	273, 784
BseDI	CCNNGG	5 cut(s)	77, 271, 512, 611, 1043
BseGI	GGATG	2 cut(s)	133, 779
BseLI	CCNNNNNNNGG	8 cut(s)	123, 124, 546, 629, 671, 689, 757, 987
BseMI	GCAATG	1 cut(s)	992
BseMII	CTCAG	5 cut(s)	396, 563, 690, 702, 1044
BseNI	ACTGG	1 cut(s)	816
BseRI	GAGGAG	3 cut(s)	215, 591, 850
BseSI	GKGCMC	1 cut(s)	750
BseXI	GCAGC	8 cut(s)	76, 217, 337, 415, 603, 631, 773, 883
BsgI	GTGCAG	2 cut(s)	83, 437
BshFI	GGCC	3 cut(s)	550, 1042, 1065
BsiHKAI	GWGCWC	2 cut(s)	728, 750
BsiSI	CCGG	2 cut(s)	171, 1066
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	8 cut(s)	123, 124, 546, 629, 671, 689, 757, 987
BsmAI	GTCTC	3 cut(s)	10, 585, 1013
BsmBI	CGTCTC	1 cut(s)	1013
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	550, 1042, 1065
Bsp1286I	GDGCHC	2 cut(s)	728, 750
Bsp143I	GATC	2 cut(s)	185, 632
Bsp1720I	GCTNAGC	1 cut(s)	1053
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	3 cut(s)	550, 1042, 1065
BspCNI	CTCAG	5 cut(s)	397, 564, 689, 703, 1045
BspLI	GGNNCC	2 cut(s)	89, 463
BspMAI	CTGCAG	1 cut(s)	621
BspPI	GGATC	2 cut(s)	193, 640
BspQI	GCTCTTC	1 cut(s)	879
BsrDI	GCAATG	1 cut(s)	992
BsrFI	RCCGGY	1 cut(s)	1065
BsrI	ACTGG	1 cut(s)	816
BssAI	RCCGGY	1 cut(s)	1065
BssECI	CCNNGG	5 cut(s)	77, 271, 512, 611, 1043
BssMI	GATC	2 cut(s)	185, 632
BssT1I	CCWWGG	4 cut(s)	77, 512, 611, 1043
Bst2UI	CCWGG	2 cut(s)	273, 784
Bst4CI	ACNGT	4 cut(s)	239, 355, 589, 752
Bst6I	CTCTTC	4 cut(s)	30, 192, 846, 879
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	3 cut(s)	426, 1040, 1050
BstDEI	CTNAG	9 cut(s)	142, 285, 405, 572, 676, 711, 878, 944, 1053
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	2 cut(s)	133, 779
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	4 cut(s)	105, 210, 496, 766
BstKTI	GATC	2 cut(s)	188, 635
BstMAI	GTCTC	3 cut(s)	10, 585, 1013
BstMBI	GATC	2 cut(s)	185, 632
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 761, 1054
BstNI	CCWGG	2 cut(s)	273, 784
BstSCI	CCNGG	3 cut(s)	169, 271, 782
BstSFI	CTRYAG	1 cut(s)	617
BstSLI	GKGCMC	1 cut(s)	750
BstV1I	GCAGC	8 cut(s)	76, 217, 337, 415, 603, 631, 773, 883
BstXI	CCANNNNNNTGG	3 cut(s)	84, 612, 1034
BsuRI	GGCC	3 cut(s)	550, 1042, 1065
BtsCI	GGATG	2 cut(s)	133, 779
Cac8I	GCNNGC	3 cut(s)	426, 1040, 1050
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	4 cut(s)	105, 210, 496, 766
Cfr10I	RCCGGY	1 cut(s)	1065
Cfr13I	GGNCC	2 cut(s)	74, 462
CseI	GACGC	2 cut(s)	50, 995
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	3 cut(s)	106, 445, 671
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	9 cut(s)	142, 285, 405, 572, 676, 711, 878, 944, 1053
DpnI	GATC	2 cut(s)	187, 634
DpnII	GATC	2 cut(s)	185, 632
EaeI	YGGCCR	1 cut(s)	1063
Eam1104I	CTCTTC	4 cut(s)	30, 192, 846, 879
EarI	CTCTTC	4 cut(s)	30, 192, 846, 879
Eco130I	CCWWGG	4 cut(s)	77, 512, 611, 1043
Eco47I	GGWCC	2 cut(s)	74, 462
Eco57I	CTGAAG	3 cut(s)	54, 216, 285
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	387
EcoRII	CCWGG	2 cut(s)	271, 782
EcoT14I	CCWWGG	4 cut(s)	77, 512, 611, 1043
ErhI	CCWWGG	4 cut(s)	77, 512, 611, 1043
Esp3I	CGTCTC	1 cut(s)	1013
FaeI	CATG	3 cut(s)	109, 448, 674
FaiI	YATR	9 cut(s)	60, 72, 107, 439, 446, 474, 662, 672, 768
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	3 cut(s)	105, 444, 670
Fnu4HI	GCNGC	9 cut(s)	65, 206, 261, 326, 429, 617, 620, 762, 897
FokI	GGATG	2 cut(s)	140, 766
Fsp4HI	GCNGC	9 cut(s)	65, 206, 261, 326, 429, 617, 620, 762, 897
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	4 cut(s)	104, 209, 495, 765
GluI	GCNGC	9 cut(s)	65, 206, 261, 326, 429, 617, 620, 762, 897
GsuI	CTGGAG	1 cut(s)	805
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	3 cut(s)	550, 1042, 1065
HapII	CCGG	2 cut(s)	171, 1066
HgaI	GACGC	2 cut(s)	50, 995
HhaI	GCGC	4 cut(s)	105, 210, 496, 766
Hin1II	CATG	3 cut(s)	109, 448, 674
Hin6I	GCGC	4 cut(s)	103, 208, 494, 764
HinP1I	GCGC	4 cut(s)	103, 208, 494, 764
HincII	GTYRAC	3 cut(s)	358, 367, 978
HindII	GTYRAC	3 cut(s)	358, 367, 978
HinfI	GANTC	2 cut(s)	574, 815
HpaII	CCGG	2 cut(s)	171, 1066
HphI	GGTGA	1 cut(s)	880
Hpy166II	GTNNAC	4 cut(s)	358, 367, 748, 978
Hpy188I	TCNGA	4 cut(s)	637, 712, 820, 834
Hpy188III	TCNNGA	5 cut(s)	178, 392, 729, 902, 1022
Hpy8I	GTNNAC	4 cut(s)	358, 367, 748, 978
HpyAV	CCTTC	6 cut(s)	4, 175, 233, 817, 859, 886
HpyCH4III	ACNGT	4 cut(s)	239, 355, 589, 752
HpyCH4IV	ACGT	3 cut(s)	22, 52, 277
HpyCH4V	TGCA	7 cut(s)	64, 418, 593, 619, 748, 808, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 761, 1054
HpyF3I	CTNAG	9 cut(s)	142, 285, 405, 572, 676, 711, 878, 944, 1053
HpySE526I	ACGT	3 cut(s)	22, 52, 277
Hsp92II	CATG	3 cut(s)	109, 448, 674
HspAI	GCGC	4 cut(s)	103, 208, 494, 764
Kzo9I	GATC	2 cut(s)	185, 632
LguI	GCTCTTC	1 cut(s)	879
LmnI	GCTCC	2 cut(s)	202, 421
Lsp1109I	GCAGC	8 cut(s)	76, 217, 337, 415, 603, 631, 773, 883
LweI	GCATC	5 cut(s)	118, 183, 492, 788, 943
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	3 cut(s)	22, 52, 277
MaeIII	GTNAC	3 cut(s)	48, 532, 565
MalI	GATC	2 cut(s)	187, 634
MboI	GATC	2 cut(s)	185, 632
MboII	GAAGA	9 cut(s)	47, 166, 209, 262, 461, 477, 856, 863, 896
MhlI	GDGCHC	2 cut(s)	728, 750
MluCI	AATT	6 cut(s)	157, 255, 387, 523, 803, 932
MlyI	GAGTC	1 cut(s)	583
MmeI	TCCRAC	4 cut(s)	5, 608, 717, 812
MseI	TTAA	1 cut(s)	791
MspI	CCGG	2 cut(s)	171, 1066
MspR9I	CCNGG	3 cut(s)	171, 273, 784
MvaI	CCWGG	2 cut(s)	273, 784
MwoI	GCNNNNNNNGC	3 cut(s)	502, 761, 1054
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	2 cut(s)	185, 632
NlaIII	CATG	3 cut(s)	109, 448, 674
NlaIV	GGNNCC	2 cut(s)	89, 463
NmuCI	GTSAC	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	879
PfeI	GAWTC	1 cut(s)	815
PflMI	CCANNNNNTGG	1 cut(s)	671
PfoI	TCCNGGA	1 cut(s)	782
PkrI	GCNGC	9 cut(s)	66, 207, 262, 327, 430, 618, 621, 763, 898
PleI	GAGTC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	582
Ppu21I	YACGTR	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	462
Psp1406I	AACGTT	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	271, 782
PspGI	CCWGG	2 cut(s)	271, 782
PspN4I	GGNNCC	2 cut(s)	89, 463
PspPI	GGNCC	2 cut(s)	74, 462
PspPPI	RGGWCCY	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	683
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	879
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	9 cut(s)	65, 206, 261, 326, 429, 617, 620, 762, 897
Sau3AI	GATC	2 cut(s)	185, 632
Sau96I	GGNCC	2 cut(s)	74, 462
SchI	GAGTC	1 cut(s)	583
ScrFI	CCNGG	3 cut(s)	171, 273, 784
SduI	GDGCHC	2 cut(s)	728, 750
SfaNI	GCATC	5 cut(s)	118, 183, 492, 788, 943
SfcI	CTRYAG	1 cut(s)	617
SinI	GGWCC	2 cut(s)	74, 462
SmlI	CTYRAG	2 cut(s)	164, 727
SmoI	CTYRAG	2 cut(s)	164, 727
Sse9I	AATT	6 cut(s)	157, 255, 387, 523, 803, 932
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	3 cut(s)	169, 271, 782
StyI	CCWWGG	4 cut(s)	77, 512, 611, 1043
TaaI	ACNGT	4 cut(s)	239, 355, 589, 752
TaiI	ACGT	3 cut(s)	25, 55, 280
TaqII	GACCGA	1 cut(s)	995
TasI	AATT	6 cut(s)	157, 255, 387, 523, 803, 932
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	8 cut(s)	64, 205, 325, 428, 616, 619, 761, 896
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	3 cut(s)	23, 122, 461
TspGWI	ACGGA	1 cut(s)	549
Van91I	CCANNNNNTGG	1 cut(s)	671
VneI	GTGCAC	1 cut(s)	746
VpaK11BI	GGWCC	2 cut(s)	74, 462
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	1 cut(s)	387
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.