FvH4_6g13640
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006575
Physical Location & Seq
Forward (+)
8297282 .. 8300319
3038 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13640.t1

Sequence Viewer

Length: 1074 bp
ATGGAAATGAAGGAGAGGCAGCGTTGGAAACCTGAAGAGGATGCATTGTTGCGTGCATATGTGAAACAGTATGGACCAAGGGAGTGGAACCTTGTATCACAGCGCATGAGCACACCCCTAAACAGGGACGCCAAATCTTGCTTAGAAAGGTGGAAGAATTATCTAAAACCAGGCATCAAGAAAGGGTCTCTTACTGAAGAGGAACAGCGTCTGGTCATTTGCCTTCAAGAGAAACACGGTAACAAGTGGAAGAAAATCGCTGCTGAAGTCCCTGGTCGAACTGCTAAAAGATTAGGCAAGTGGTGGGAAGTGTTCAAAGATAAGCAGCAGAGAGAACAGAAGAACAACAATACAGTTGTGCAGCCTATTGAGGAGGGCAAGTACGATCGGATTCTTGAAACTTTTGCTGAGAAGCTAGTGAAGGAGCGTCCAGCCCCATATCTCATGGCCACTTCCAATGGGGCCTTTCTTCACAACGAAGCATCTCCAGCTCCATCAATGCTTCCTCCCTGGCTTTCAAATTCAAATGTCACCTCACATGCTAGAGCACCATCTCCTTCTGTTACCTTGAGTCTGTCCGCTACAGTTGCACCCTCTCGAACCTCTCCTCCAATCCCCTGGCTGCAGCCTGATAGAGGACCCGAAAACAGTTTTGCATTGAACAATCTGCCTCCTCATGTTTCAGTCCCTTGTGGAGAAAATTATGTGATATCTGAGTTGGTGGAGTGCTCAAGAGAGTTGGAGGAAGTGCACCGTGCTTGGGCAGCACATAAAAAAGAAGCGTCTTGGAGGTTAAGAAGGGTAGAGTTGCAATTGGAATCAGAGAAGGCTTGTCGAAAGAGGGAGAAAATGGACGAGATTGAGGCGAAGGTGAAGGCTCTAAGGGAAGAGCAGAAGGCTGCTCTGGATAGGATCGAAGCAGAATACAGGGAACAAATAGCAGGACTAAGGAGAGATGCCGAAATAAAGGAGCAAAAGTTGGCTGATCAATGGTCTGCAAAGCATATGCGTCTCACTCAGTTTCTTGAGCAGATGGGCGGCAGACCTAGGCTTGCTGAGCCTAATGCCCGGTGA

Protein Analysis

358

Amino Acids

41.3

Weight (kDa)

9.38

Isoelectric Point (pI)

61.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 55 2.5e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 9 - 63 4.8e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 61 - 96 2.6e-09 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 65 - 112 1.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 579, 1038
AclWI GGATC 1 cut(s) 920
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 3 cut(s) 54, 216, 285
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 383
AfiI CCNNNNNNNGG 4 cut(s) 123, 124, 635, 760
AgsI TTSAA 6 cut(s) 227, 316, 398, 519, 525, 661
AjnI CCWGG 4 cut(s) 169, 271, 509, 617
AloI GAACNNNNNNTCC 2 cut(s) 592, 624
AluBI AGCT 2 cut(s) 415, 491
AluI AGCT 2 cut(s) 415, 491
Alw21I GWGCWC 4 cut(s) 113, 550, 731, 753
Alw26I GTCTC 2 cut(s) 192, 1016
Alw44I GTGCAC 1 cut(s) 749
AlwI GGATC 1 cut(s) 920
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 2 cut(s) 447, 462
ApaLI GTGCAC 1 cut(s) 749
ApeKI GCWGC 8 cut(s) 19, 260, 325, 361, 622, 625, 764, 899
ApoI RAATTY 1 cut(s) 520
AspA2I CCTAGG 1 cut(s) 1046
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 74, 462, 638
AsuC2I CCSGG 1 cut(s) 1069
AsuHPI GGTGA 2 cut(s) 523, 883
AvaII GGWCC 2 cut(s) 74, 638
AvrII CCTAGG 1 cut(s) 1046
BaeGI GKGCMC 1 cut(s) 753
BalI TGGCCA 1 cut(s) 449
Bbv12I GWGCWC 4 cut(s) 113, 550, 731, 753
BbvI GCAGC 8 cut(s) 31, 247, 337, 373, 609, 637, 776, 886
BccI CCATC 3 cut(s) 502, 559, 1027
BciT130I CCWGG 4 cut(s) 171, 273, 511, 619
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 1 cut(s) 1069
BcoDI GTCTC 2 cut(s) 192, 1016
BfaI CTAG 3 cut(s) 416, 543, 1047
BfmI CTRYAG 2 cut(s) 582, 623
BisI GCNGC 9 cut(s) 20, 261, 326, 362, 623, 626, 765, 900, 1039
BlnI CCTAGG 1 cut(s) 1046
BlpI GCTNAGC 1 cut(s) 1056
BlsI GCNGC 9 cut(s) 21, 262, 327, 363, 624, 627, 766, 901, 1040
Bme1390I CCNGG 5 cut(s) 171, 273, 511, 619, 1069
Bme18I GGWCC 2 cut(s) 74, 638
BmgT120I GGNCC 3 cut(s) 74, 462, 638
BmiI GGNNCC 3 cut(s) 89, 463, 640
BmrFI CCNGG 5 cut(s) 171, 273, 511, 619, 1069
BmsI GCATC 4 cut(s) 31, 183, 491, 946
BpmI CTGGAG 1 cut(s) 471
Bpu1102I GCTNAGC 1 cut(s) 1056
BpuEI CTTGAG 3 cut(s) 589, 715, 1046
BpuMI CCSGG 1 cut(s) 1069
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 5 cut(s) 77, 271, 509, 617, 1046
BsaXI ACNNNNNCTCC 6 cut(s) 365, 395, 592, 622, 962, 992
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 124, 635, 760
BseBI CCWGG 4 cut(s) 171, 273, 511, 619
BseDI CCNNGG 5 cut(s) 77, 271, 509, 617, 1046
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 4 cut(s) 123, 124, 635, 760
BseMII CTCAG 4 cut(s) 399, 705, 1031, 1047
BseRI GAGGAG 3 cut(s) 386, 597, 663
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 8 cut(s) 31, 247, 337, 373, 609, 637, 776, 886
BsgI GTGCAG 1 cut(s) 380
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 2 cut(s) 449, 464
BsiEI CGRYCG 1 cut(s) 388
BsiHKAI GWGCWC 4 cut(s) 113, 550, 731, 753
BsiSI CCGG 1 cut(s) 1069
BslFI GGGAC 3 cut(s) 140, 254, 671
BslI CCNNNNNNNGG 4 cut(s) 123, 124, 635, 760
BsmAI GTCTC 2 cut(s) 192, 1016
BsmBI CGTCTC 1 cut(s) 1016
BsmFI GGGAC 3 cut(s) 140, 254, 671
BsnI GGCC 2 cut(s) 449, 464
Bso31I GGTCTC 1 cut(s) 192
Bsp1286I GDGCHC 4 cut(s) 113, 550, 731, 753
Bsp143I GATC 3 cut(s) 385, 912, 985
Bsp1720I GCTNAGC 1 cut(s) 1056
BspACI CCGC 2 cut(s) 579, 1038
BspANI GGCC 2 cut(s) 449, 464
BspCNI CTCAG 4 cut(s) 400, 706, 1030, 1048
BspLI GGNNCC 3 cut(s) 89, 463, 640
BspMAI CTGCAG 1 cut(s) 627
BspPI GGATC 1 cut(s) 920
BspQI GCTCTTC 1 cut(s) 882
BspTNI GGTCTC 1 cut(s) 192
BssECI CCNNGG 5 cut(s) 77, 271, 509, 617, 1046
BssMI GATC 3 cut(s) 385, 912, 985
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 2 cut(s) 77, 1046
Bst2UI CCWGG 4 cut(s) 171, 273, 511, 619
Bst4CI ACNGT 6 cut(s) 69, 239, 355, 586, 650, 755
Bst6I CTCTTC 3 cut(s) 30, 192, 882
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 54, 1053
BstDEI CTNAG 7 cut(s) 142, 408, 714, 881, 947, 1017, 1056
BstENI CCTNNNNNAGG 1 cut(s) 633
BstF5I GGATG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 388, 915, 988
BstMAI GTCTC 2 cut(s) 192, 1016
BstMBI GATC 3 cut(s) 385, 912, 985
BstMCI CGRYCG 1 cut(s) 388
BstMWI GCNNNNNNNGC 4 cut(s) 488, 587, 764, 1057
BstNI CCWGG 4 cut(s) 171, 273, 511, 619
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 5 cut(s) 169, 271, 509, 617, 1067
BstSFI CTRYAG 2 cut(s) 582, 623
BstSLI GKGCMC 1 cut(s) 753
BstV1I GCAGC 8 cut(s) 31, 247, 337, 373, 609, 637, 776, 886
BstXI CCANNNNNNTGG 2 cut(s) 84, 618
BsuRI GGCC 2 cut(s) 449, 464
BtsCI GGATG 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 54, 1053
CaiI CAGNNNCTG 1 cut(s) 211
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 3 cut(s) 74, 462, 638
CseI GACGC 5 cut(s) 137, 197, 416, 771, 998
Csp6I GTAC 1 cut(s) 382
CviAII CATG 4 cut(s) 106, 445, 539, 677
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 7 cut(s) 142, 408, 714, 881, 947, 1017, 1056
DpnI GATC 3 cut(s) 387, 914, 987
DpnII GATC 3 cut(s) 385, 912, 985
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 3 cut(s) 30, 192, 882
EarI CTCTTC 3 cut(s) 30, 192, 882
Eco130I CCWWGG 2 cut(s) 77, 1046
Eco31I GGTCTC 1 cut(s) 192
Eco32I GATATC 1 cut(s) 711
Eco47I GGWCC 2 cut(s) 74, 638
Eco57I CTGAAG 3 cut(s) 54, 216, 285
EcoNI CCTNNNNNAGG 1 cut(s) 633
EcoO109I RGGNCCY 2 cut(s) 462, 638
EcoRII CCWGG 4 cut(s) 169, 271, 509, 617
EcoRV GATATC 1 cut(s) 711
EcoT14I CCWWGG 2 cut(s) 77, 1046
EcoT22I ATGCAT 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 77, 1046
Esp3I CGTCTC 1 cut(s) 1016
FaeI CATG 4 cut(s) 109, 448, 542, 680
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 3 cut(s) 140, 254, 671
FatI CATG 4 cut(s) 105, 444, 538, 676
FauNDI CATATG 2 cut(s) 58, 1005
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 9 cut(s) 20, 261, 326, 362, 623, 626, 765, 900, 1039
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 9 cut(s) 20, 261, 326, 362, 623, 626, 765, 900, 1039
FspBI CTAG 3 cut(s) 416, 543, 1047
GlaI GCGC 1 cut(s) 104
GluI GCNGC 9 cut(s) 20, 261, 326, 362, 623, 626, 765, 900, 1039
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 2 cut(s) 449, 464
HapII CCGG 1 cut(s) 1069
HgaI GACGC 5 cut(s) 137, 197, 416, 771, 998
HhaI GCGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 4 cut(s) 109, 448, 542, 680
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 3 cut(s) 391, 571, 818
HpaII CCGG 1 cut(s) 1069
HphI GGTGA 2 cut(s) 523, 883
Hpy166II GTNNAC 1 cut(s) 751
Hpy188I TCNGA 3 cut(s) 390, 715, 823
Hpy188III TCNNGA 7 cut(s) 178, 227, 395, 597, 732, 905, 1025
Hpy8I GTNNAC 1 cut(s) 751
HpyAV CCTTC 9 cut(s) 4, 233, 415, 567, 792, 820, 862, 868, 889
HpyCH4III ACNGT 6 cut(s) 69, 239, 355, 586, 650, 755
HpyCH4V TGCA 9 cut(s) 44, 56, 361, 590, 625, 656, 751, 811, 998
HpyF10VI GCNNNNNNNGC 4 cut(s) 488, 587, 764, 1057
HpyF3I CTNAG 7 cut(s) 142, 408, 714, 881, 947, 1017, 1056
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 4 cut(s) 109, 448, 542, 680
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 3 cut(s) 385, 912, 985
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 3 cut(s) 424, 496, 970
Lsp1109I GCAGC 8 cut(s) 31, 247, 337, 373, 609, 637, 776, 886
LweI GCATC 4 cut(s) 31, 183, 491, 946
MaeI CTAG 3 cut(s) 416, 543, 1047
MaeIII GTNAC 3 cut(s) 239, 529, 562
MalI GATC 3 cut(s) 387, 914, 987
MboI GATC 3 cut(s) 385, 912, 985
MboII GAAGA 7 cut(s) 47, 166, 209, 262, 352, 461, 899
MfeI CAATTG 1 cut(s) 812
MhlI GDGCHC 4 cut(s) 113, 550, 731, 753
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 4 cut(s) 157, 520, 700, 812
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 1 cut(s) 580
MmeI TCCRAC 2 cut(s) 5, 720
Mox20I TGGCCA 1 cut(s) 449
Mph1103I ATGCAT 1 cut(s) 46
MscI TGGCCA 1 cut(s) 449
MseI TTAA 1 cut(s) 794
Msp20I TGGCCA 1 cut(s) 449
MspI CCGG 1 cut(s) 1069
MspR9I CCNGG 5 cut(s) 171, 273, 511, 619, 1069
MunI CAATTG 1 cut(s) 812
MvaI CCWGG 4 cut(s) 171, 273, 511, 619
MwoI GCNNNNNNNGC 4 cut(s) 488, 587, 764, 1057
NciI CCSGG 1 cut(s) 1069
NdeI CATATG 2 cut(s) 58, 1005
NdeII GATC 3 cut(s) 385, 912, 985
NlaIII CATG 4 cut(s) 109, 448, 542, 680
NlaIV GGNNCC 3 cut(s) 89, 463, 640
NmuCI GTSAC 1 cut(s) 529
NsiI ATGCAT 1 cut(s) 46
NspI RCATGY 1 cut(s) 542
PciSI GCTCTTC 1 cut(s) 882
PfeI GAWTC 2 cut(s) 391, 818
PkrI GCNGC 9 cut(s) 21, 262, 327, 363, 624, 627, 766, 901, 1040
Ple19I CGATCG 1 cut(s) 388
PleI GAGTC 1 cut(s) 579
PpsI GAGTC 1 cut(s) 579
PpuMI RGGWCCY 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 4 cut(s) 169, 271, 509, 617
PspGI CCWGG 4 cut(s) 169, 271, 509, 617
PspN4I GGNNCC 3 cut(s) 89, 463, 640
PspPI GGNCC 3 cut(s) 74, 462, 638
PspPPI RGGWCCY 1 cut(s) 638
PstI CTGCAG 1 cut(s) 627
PstNI CAGNNNCTG 1 cut(s) 211
PvuI CGATCG 1 cut(s) 388
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 1 cut(s) 794
SatI GCNGC 9 cut(s) 20, 261, 326, 362, 623, 626, 765, 900, 1039
Sau3AI GATC 3 cut(s) 385, 912, 985
Sau96I GGNCC 3 cut(s) 74, 462, 638
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 5 cut(s) 171, 273, 511, 619, 1069
SduI GDGCHC 4 cut(s) 113, 550, 731, 753
SfaNI GCATC 4 cut(s) 31, 183, 491, 946
SfcI CTRYAG 2 cut(s) 582, 623
SinI GGWCC 2 cut(s) 74, 638
SmlI CTYRAG 3 cut(s) 568, 730, 1025
SmoI CTYRAG 3 cut(s) 568, 730, 1025
Sse9I AATT 4 cut(s) 157, 520, 700, 812
SsiI CCGC 2 cut(s) 579, 1038
SspMI CTAG 3 cut(s) 416, 543, 1047
StyD4I CCNGG 5 cut(s) 169, 271, 509, 617, 1067
StyI CCWWGG 2 cut(s) 77, 1046
TaaI ACNGT 6 cut(s) 69, 239, 355, 586, 650, 755
TaqI TCGA 4 cut(s) 277, 598, 835, 915
TasI AATT 4 cut(s) 157, 520, 700, 812
TauI GCSGC 1 cut(s) 1041
TfiI GAWTC 2 cut(s) 391, 818
Tru1I TTAA 1 cut(s) 794
Tru9I TTAA 1 cut(s) 794
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 8 cut(s) 19, 260, 325, 361, 622, 625, 764, 899
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 1 cut(s) 23
VneI GTGCAC 1 cut(s) 749
VpaK11BI GGWCC 2 cut(s) 74, 638
XagI CCTNNNNNAGG 1 cut(s) 633
XapI RAATTY 1 cut(s) 520
XceI RCATGY 1 cut(s) 542
XmaJI CCTAGG 1 cut(s) 1046
XspI CTAG 3 cut(s) 416, 543, 1047
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.