RchiOBHm_Chr3g0466491
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006575
Physical Location & Seq
Forward (+)
12947904 .. 12951045
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43256

Sequence Viewer

Length: 1080 bp
ATGGAAATGAAGGAGAGGCAGCGTTGGAGACCTGAAGAGGATGCATTGTTGCGTGCATATGTGAAACAATATGGACCAAGGGAGTGGAACCTTGTATCACAGCGCATGAACACACCCCTAAACAGGGACGCCAAATCTTGCTTAGAAAGGTGGAAGAATTATCTAAAACCAGGCATCAAGAAAGGATCTCTTACTGAAGAGGAACAGCGTCTTGTCATTTGCCTTCAAGAGAAACACGGTAATAAATGGAAGAAAATCGCTGCTGAGGTCCCTGGTCGTACTGCTAAAAGATTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAGAACAACAAGACAGTTGTTCAGCCTATTGAGGAGGGCAAGTACGATAGGATTCTTGAAACTTTTGCTGAGAAGCTAGTGAAGGAGCGTCCAGCCCCAGCTTATCTCATGGCCACTTCCAAAGGGGCCTTTCTTCACAACGAAGTGTCTCCAGCGCCATCGATGCTTCCTCCTTGGCTTTCAAATTCAAATGTTACCTCACATGTCAGGCCACCATCTCCTTCTGTTACCTTAAGTCTGTCCCCTACAGTTGCACCCTCTCGAGCCTCTCCTCCAATCCCCTGGCTGCAGCCTGATAGAGGACCTGAAAACAGTAGTTTTGTATTGAGCAATCTGCCTCCTCCTGGTTCAGCCCCTTGTGGAGAAAATTTCGTGATATCTGAATTGGTGGAGTGCTCGAGAGAGTTGGAGGAAGTGCATCATGCTTGGGCAGCACATAAAAAGGAAGCCTCCTGGAGGTTAAGAAGGGTAGAGTTGCAACTGGAATCGGAGAAGGCTTGTCGGAAGAGGGAGAAAATGGATGAGATTGAGGCGAAGGTGAAGGCTCTAAGGGAAGAGCAGAAGGCTGCTCTGGAGAGGATCGAAGCAGAATACAGGGAACAAATAGCTGGACTACGGAGAGATGCCGAATTGAAGGAGCAAAAGTTGGCTGATCAATGGTCTGCAAAGCATATGCGTCTCACTAAATTTCTTGAGCAGATGGGCGGCAGACCCAGGCTTGCTGAGCCTAATGGCCGGTGA

Protein Analysis

359

Amino Acids

41.49

Weight (kDa)

9.49

Isoelectric Point (pI)

64.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 6 - 55 1.3e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 9 - 66 1.4e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 61 - 96 2.6e-09 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 65 - 112 1.8e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1044
AclWI GGATC 2 cut(s) 193, 926
AcoI YGGCCR 2 cut(s) 450, 1072
AcsI RAATTY 3 cut(s) 523, 706, 1025
AcuI CTGAAG 2 cut(s) 54, 216
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 280, 383
AfiI CCNNNNNNNGG 5 cut(s) 123, 124, 638, 683, 795
AflII CTTAAG 1 cut(s) 571
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 6 cut(s) 227, 316, 398, 522, 528, 973
AjnI CCWGG 6 cut(s) 169, 271, 620, 682, 791, 1052
AluBI AGCT 3 cut(s) 415, 440, 947
AluI AGCT 3 cut(s) 415, 440, 947
Alw21I GWGCWC 1 cut(s) 737
Alw26I GTCTC 3 cut(s) 22, 492, 1022
AlwI GGATC 2 cut(s) 193, 926
Ama87I CYCGRG 2 cut(s) 600, 736
AoxI GGCC 4 cut(s) 450, 465, 548, 1072
ApeKI GCWGC 7 cut(s) 19, 260, 325, 625, 628, 770, 905
ApoI RAATTY 3 cut(s) 523, 706, 1025
AspLEI GCGC 2 cut(s) 105, 496
AspS9I GGNCC 4 cut(s) 74, 268, 465, 641
AsuHPI GGTGA 1 cut(s) 889
AvaI CYCGRG 2 cut(s) 600, 736
AvaII GGWCC 3 cut(s) 74, 268, 641
BalI TGGCCA 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 737
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 7 cut(s) 31, 247, 337, 612, 640, 782, 892
BccI CCATC 3 cut(s) 505, 562, 1033
BciT130I CCWGG 6 cut(s) 171, 273, 622, 684, 793, 1054
BclI TGATCA 1 cut(s) 991
BcoDI GTCTC 3 cut(s) 22, 492, 1022
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 2 cut(s) 585, 626
BfoI RGCGCY 1 cut(s) 497
BfrI CTTAAG 1 cut(s) 571
BisI GCNGC 8 cut(s) 20, 261, 326, 626, 629, 771, 906, 1045
BlpI GCTNAGC 1 cut(s) 1062
BlsI GCNGC 8 cut(s) 21, 262, 327, 627, 630, 772, 907, 1046
Bme1390I CCNGG 6 cut(s) 171, 273, 622, 684, 793, 1054
Bme18I GGWCC 3 cut(s) 74, 268, 641
BmeT110I CYCGRG 2 cut(s) 600, 736
BmgT120I GGNCC 4 cut(s) 74, 268, 465, 641
BmiI GGNNCC 3 cut(s) 89, 270, 466
BmrFI CCNGG 6 cut(s) 171, 273, 622, 684, 793, 1054
BmsI GCATC 5 cut(s) 31, 183, 492, 766, 952
BpmI CTGGAG 3 cut(s) 474, 814, 932
Bpu10I CCTNAGC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 1 cut(s) 1052
Bsa29I ATCGAT 1 cut(s) 500
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 5 cut(s) 77, 271, 512, 620, 1052
BsaXI ACNNNNNCTCC 4 cut(s) 365, 395, 968, 998
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 124, 638, 683, 795
Bse118I RCCGGY 1 cut(s) 1074
Bse1I ACTGG 1 cut(s) 825
BseBI CCWGG 6 cut(s) 171, 273, 622, 684, 793, 1054
BseCI ATCGAT 1 cut(s) 500
BseDI CCNNGG 5 cut(s) 77, 271, 512, 620, 1052
BseGI GGATG 2 cut(s) 46, 865
BseLI CCNNNNNNNGG 5 cut(s) 123, 124, 638, 683, 795
BseMII CTCAG 3 cut(s) 255, 399, 1053
BseNI ACTGG 1 cut(s) 825
BseRI GAGGAG 3 cut(s) 386, 600, 669
BseXI GCAGC 7 cut(s) 31, 247, 337, 612, 640, 782, 892
BseYI CCCAGC 1 cut(s) 436
BshFI GGCC 4 cut(s) 452, 467, 550, 1074
BshVI ATCGAT 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 737
BsiHKCI CYCGRG 2 cut(s) 600, 736
BsiSI CCGG 1 cut(s) 1075
BslFI GGGAC 3 cut(s) 140, 254, 565
BslI CCNNNNNNNGG 5 cut(s) 123, 124, 638, 683, 795
BsmAI GTCTC 3 cut(s) 22, 492, 1022
BsmBI CGTCTC 1 cut(s) 1022
BsmFI GGGAC 3 cut(s) 140, 254, 565
BsnI GGCC 4 cut(s) 452, 467, 550, 1074
Bso31I GGTCTC 1 cut(s) 22
BsoBI CYCGRG 2 cut(s) 600, 736
Bsp1286I GDGCHC 1 cut(s) 737
Bsp143I GATC 3 cut(s) 185, 918, 991
Bsp1720I GCTNAGC 1 cut(s) 1062
BspACI CCGC 1 cut(s) 1044
BspANI GGCC 4 cut(s) 452, 467, 550, 1074
BspCNI CTCAG 3 cut(s) 256, 400, 1054
BspDI ATCGAT 1 cut(s) 500
BspLI GGNNCC 3 cut(s) 89, 270, 466
BspMAI CTGCAG 1 cut(s) 630
BspPI GGATC 2 cut(s) 193, 926
BspQI GCTCTTC 1 cut(s) 888
BspTI CTTAAG 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 1074
BsrI ACTGG 1 cut(s) 825
BssAI RCCGGY 1 cut(s) 1074
BssECI CCNNGG 5 cut(s) 77, 271, 512, 620, 1052
BssMI GATC 3 cut(s) 185, 918, 991
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 2 cut(s) 77, 512
Bst2UI CCWGG 6 cut(s) 171, 273, 622, 684, 793, 1054
Bst4CI ACNGT 4 cut(s) 239, 355, 589, 653
Bst6I CTCTTC 4 cut(s) 30, 192, 839, 888
BstACI GRCGYC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 571
BstC8I GCNNGC 2 cut(s) 54, 1059
BstDEI CTNAG 5 cut(s) 142, 264, 408, 887, 1062
BstENI CCTNNNNNAGG 2 cut(s) 636, 793
BstF5I GGATG 2 cut(s) 46, 865
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 2 cut(s) 105, 496
BstKTI GATC 3 cut(s) 188, 921, 994
BstMAI GTCTC 3 cut(s) 22, 492, 1022
BstMBI GATC 3 cut(s) 185, 918, 991
BstMWI GCNNNNNNNGC 3 cut(s) 502, 770, 1063
BstNI CCWGG 6 cut(s) 171, 273, 622, 684, 793, 1054
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 6 cut(s) 169, 271, 620, 682, 791, 1052
BstSFI CTRYAG 2 cut(s) 585, 626
BstV1I GCAGC 7 cut(s) 31, 247, 337, 612, 640, 782, 892
BstX2I RGATCY 1 cut(s) 185
BstXI CCANNNNNNTGG 2 cut(s) 84, 621
BstYI RGATCY 1 cut(s) 185
Bsu15I ATCGAT 1 cut(s) 500
BsuRI GGCC 4 cut(s) 452, 467, 550, 1074
BsuTUI ATCGAT 1 cut(s) 500
BtsCI GGATG 2 cut(s) 46, 865
Cac8I GCNNGC 2 cut(s) 54, 1059
CfoI GCGC 2 cut(s) 105, 496
Cfr10I RCCGGY 1 cut(s) 1074
Cfr13I GGNCC 4 cut(s) 74, 268, 465, 641
ClaI ATCGAT 1 cut(s) 500
CseI GACGC 4 cut(s) 137, 197, 416, 1004
Csp6I GTAC 2 cut(s) 279, 382
CviAII CATG 4 cut(s) 106, 448, 542, 761
CviQI GTAC 2 cut(s) 279, 382
DdeI CTNAG 5 cut(s) 142, 264, 408, 887, 1062
DpnI GATC 3 cut(s) 187, 920, 993
DpnII GATC 3 cut(s) 185, 918, 991
EaeI YGGCCR 2 cut(s) 450, 1072
Eam1104I CTCTTC 4 cut(s) 30, 192, 839, 888
EarI CTCTTC 4 cut(s) 30, 192, 839, 888
Eco130I CCWWGG 2 cut(s) 77, 512
Eco31I GGTCTC 1 cut(s) 22
Eco32I GATATC 1 cut(s) 717
Eco47I GGWCC 3 cut(s) 74, 268, 641
Eco57I CTGAAG 2 cut(s) 54, 216
Eco88I CYCGRG 2 cut(s) 600, 736
EcoNI CCTNNNNNAGG 2 cut(s) 636, 793
EcoO109I RGGNCCY 3 cut(s) 268, 465, 641
EcoRII CCWGG 6 cut(s) 169, 271, 620, 682, 791, 1052
EcoRV GATATC 1 cut(s) 717
EcoT14I CCWWGG 2 cut(s) 77, 512
EcoT22I ATGCAT 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 77, 512
Esp3I CGTCTC 1 cut(s) 1022
FaeI CATG 4 cut(s) 109, 451, 545, 764
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 3 cut(s) 140, 254, 565
FatI CATG 4 cut(s) 105, 447, 541, 760
FauNDI CATATG 2 cut(s) 58, 1011
FbaI TGATCA 1 cut(s) 991
Fnu4HI GCNGC 8 cut(s) 20, 261, 326, 626, 629, 771, 906, 1045
FokI GGATG 2 cut(s) 53, 872
Fsp4HI GCNGC 8 cut(s) 20, 261, 326, 626, 629, 771, 906, 1045
FspBI CTAG 1 cut(s) 416
GlaI GCGC 2 cut(s) 104, 495
GluI GCNGC 8 cut(s) 20, 261, 326, 626, 629, 771, 906, 1045
GsaI CCCAGC 1 cut(s) 440
GsuI CTGGAG 3 cut(s) 474, 814, 932
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 4 cut(s) 452, 467, 550, 1074
HapII CCGG 1 cut(s) 1075
HgaI GACGC 4 cut(s) 137, 197, 416, 1004
HhaI GCGC 2 cut(s) 105, 496
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 4 cut(s) 109, 451, 545, 764
Hin6I GCGC 2 cut(s) 103, 494
HinP1I GCGC 2 cut(s) 103, 494
HinfI GANTC 2 cut(s) 391, 824
HpaII CCGG 1 cut(s) 1075
HphI GGTGA 1 cut(s) 889
Hpy188I TCNGA 3 cut(s) 721, 829, 843
Hpy188III TCNNGA 8 cut(s) 178, 227, 395, 600, 712, 738, 911, 1031
HpyCH4III ACNGT 4 cut(s) 239, 355, 589, 653
HpyCH4V TGCA 7 cut(s) 44, 56, 593, 628, 757, 817, 1004
HpyF10VI GCNNNNNNNGC 3 cut(s) 502, 770, 1063
HpyF3I CTNAG 5 cut(s) 142, 264, 408, 887, 1062
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 4 cut(s) 109, 451, 545, 764
HspAI GCGC 2 cut(s) 103, 494
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 3 cut(s) 185, 918, 991
LguI GCTCTTC 1 cut(s) 888
LmnI GCTCC 2 cut(s) 424, 976
Lsp1109I GCAGC 7 cut(s) 31, 247, 337, 612, 640, 782, 892
LweI GCATC 5 cut(s) 31, 183, 492, 766, 952
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 532, 565
MalI GATC 3 cut(s) 187, 920, 993
MboI GATC 3 cut(s) 185, 918, 991
MboII GAAGA 8 cut(s) 47, 166, 209, 262, 352, 464, 856, 905
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 737
MlsI TGGCCA 1 cut(s) 452
MluCI AATT 6 cut(s) 157, 523, 706, 722, 968, 1025
MluNI TGGCCA 1 cut(s) 452
MmeI TCCRAC 3 cut(s) 5, 726, 821
Mox20I TGGCCA 1 cut(s) 452
Mph1103I ATGCAT 1 cut(s) 46
MscI TGGCCA 1 cut(s) 452
MseI TTAA 2 cut(s) 572, 800
Msp20I TGGCCA 1 cut(s) 452
MspCI CTTAAG 1 cut(s) 571
MspI CCGG 1 cut(s) 1075
MspR9I CCNGG 6 cut(s) 171, 273, 622, 684, 793, 1054
MvaI CCWGG 6 cut(s) 171, 273, 622, 684, 793, 1054
MwoI GCNNNNNNNGC 3 cut(s) 502, 770, 1063
NdeI CATATG 2 cut(s) 58, 1011
NdeII GATC 3 cut(s) 185, 918, 991
NlaIII CATG 4 cut(s) 109, 451, 545, 764
NlaIV GGNNCC 3 cut(s) 89, 270, 466
NsiI ATGCAT 1 cut(s) 46
NspI RCATGY 1 cut(s) 545
PaeR7I CTCGAG 2 cut(s) 600, 736
PciI ACATGT 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 888
PfeI GAWTC 2 cut(s) 391, 824
PfoI TCCNGGA 1 cut(s) 791
PkrI GCNGC 8 cut(s) 21, 262, 327, 627, 630, 772, 907, 1046
PpuMI RGGWCCY 2 cut(s) 268, 641
PscI ACATGT 1 cut(s) 541
Psp5II RGGWCCY 2 cut(s) 268, 641
Psp6I CCWGG 6 cut(s) 169, 271, 620, 682, 791, 1052
PspFI CCCAGC 1 cut(s) 436
PspGI CCWGG 6 cut(s) 169, 271, 620, 682, 791, 1052
PspN4I GGNNCC 3 cut(s) 89, 270, 466
PspPI GGNCC 4 cut(s) 74, 268, 465, 641
PspPPI RGGWCCY 2 cut(s) 268, 641
PstI CTGCAG 1 cut(s) 630
PsuI RGATCY 1 cut(s) 185
RsaI GTAC 2 cut(s) 280, 383
RsaNI GTAC 2 cut(s) 279, 382
SapI GCTCTTC 1 cut(s) 888
SaqAI TTAA 2 cut(s) 572, 800
SatI GCNGC 8 cut(s) 20, 261, 326, 626, 629, 771, 906, 1045
Sau3AI GATC 3 cut(s) 185, 918, 991
Sau96I GGNCC 4 cut(s) 74, 268, 465, 641
ScrFI CCNGG 6 cut(s) 171, 273, 622, 684, 793, 1054
SduI GDGCHC 1 cut(s) 737
SfaNI GCATC 5 cut(s) 31, 183, 492, 766, 952
SfcI CTRYAG 2 cut(s) 585, 626
Sfr274I CTCGAG 2 cut(s) 600, 736
SinI GGWCC 3 cut(s) 74, 268, 641
SlaI CTCGAG 2 cut(s) 600, 736
SmlI CTYRAG 4 cut(s) 571, 600, 736, 1031
SmoI CTYRAG 4 cut(s) 571, 600, 736, 1031
Sse9I AATT 6 cut(s) 157, 523, 706, 722, 968, 1025
SsiI CCGC 1 cut(s) 1044
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 6 cut(s) 169, 271, 620, 682, 791, 1052
StyI CCWWGG 2 cut(s) 77, 512
TaaI ACNGT 4 cut(s) 239, 355, 589, 653
TaqI TCGA 4 cut(s) 500, 601, 737, 921
TasI AATT 6 cut(s) 157, 523, 706, 722, 968, 1025
TauI GCSGC 1 cut(s) 1047
TfiI GAWTC 2 cut(s) 391, 824
Tru1I TTAA 2 cut(s) 572, 800
Tru9I TTAA 2 cut(s) 572, 800
TseI GCWGC 7 cut(s) 19, 260, 325, 625, 628, 770, 905
TspDTI ATGAA 2 cut(s) 23, 122
TspGWI ACGGA 1 cut(s) 970
Vha464I CTTAAG 1 cut(s) 571
VpaK11BI GGWCC 3 cut(s) 74, 268, 641
XagI CCTNNNNNAGG 2 cut(s) 636, 793
XapI RAATTY 3 cut(s) 523, 706, 1025
XceI RCATGY 1 cut(s) 545
XhoI CTCGAG 2 cut(s) 600, 736
XspI CTAG 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.