AT2G37880

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016161
Physical Location & Seq
Forward (+)
15860627 .. 15861665
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37880.1

Sequence Viewer

Length: 744 bp
ATGACGAAAATTGACTCTCTCCGTCGATTTCTTCTTCCATGTATCTCAACTCCGACGAATCCAACCACCGTATCAACAACATCCACCGGAGCTTCCAAGAAACGTCTCAGTACTTCCCTAAGAGACGATATCGACGTTCAAGATTCAGCTTCTTCCTCCGCCTCTTCCTCCGAGGCTACTTCCGCCGTCGACTACAGCATATCCGCCGTCACGGTGCCGCAGAGACCGTCGAAGACGATGGTGATTGGTACGATATTCGGTAGAAGAAAGGGACACGTGTGGTTCTGTGTTCAACACGACCGTCTCTCTGTTAAACCAATCCTTCTCCTCGAGCTTTCAATAGCTACGAGCCAGTTAGTTCACGAGATGGGTTCGGGTCTTGTTCGTGTCGCTTTAGAATGCCCGACCCGACCCGAATTGAAGTCTTGCTTGCTGAGATCCGTACCCGTTTGGACGATGTTTTGTAACGGAAGGAAGCTAGGGTTTGCTGTACGGAGAAGTGCTAATGAAGAGACGAGGATGATGTTGAAGAGATTGGAGTCTATGACTGTTGGAGCGGGTGTGTTGCCATCTGGATCCGGGTTGGGTGGGTCTGATGAATCGGATACTGATGAGGTTATGTATATGAGAGCGAATTATGAGCATGTTGTTGGTAGCTCTGACTCGGAGTCGTTTCATCTCATTAACCCTGATGCTAACTCTGCTCAAGAACTCAGTATCTTCTTGCTCAGGACCTCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

247

Amino Acids

26.84

Weight (kDa)

8.3

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 81 - 244 2.9e-64 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37880
fragaria_vesca FvH4_6g12850
malus_domestica MD04G1137600.v1.1 MD12G1152400.v1.1
prunus_persica Prupe.6G263600_v2.0.a1
pyrus_communis pycom04g12600
rosa_chinensis RchiOBHm_Chr3g0464851
rosa_laevigata RLG00000024669
rosa_multiflora Rmu_sc0007114.1_g000004
rosa_roxburghii Rroxscaffold_6G00415390
rosa_rugosa Rorug03G0074400
rosa_samantha Rh3BG137200 Rh3CG139800 Rh3DG138600
rosa_wichuraiana Rw3G011210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 557
AccI GTMKAC 1 cut(s) 189
AciI CCGC 5 cut(s) 159, 183, 204, 218, 557
AclWI GGATC 3 cut(s) 432, 570, 583
AcvI CACGTG 1 cut(s) 277
AfaI GTAC 4 cut(s) 112, 250, 444, 492
AflIII ACRYGT 2 cut(s) 274, 276
AgsI TTSAA 5 cut(s) 140, 293, 339, 421, 529
AhdI GACNNNNNGTC 1 cut(s) 667
AluBI AGCT 6 cut(s) 92, 149, 334, 344, 478, 657
AluI AGCT 6 cut(s) 92, 149, 334, 344, 478, 657
Alw26I GTCTC 5 cut(s) 110, 117, 217, 308, 506
AlwI GGATC 3 cut(s) 432, 570, 583
Ama87I CYCGRG 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 732
AsuC2I CCSGG 1 cut(s) 580
AsuHPI GGTGA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 732
BaeI ACNNNNGTAYC 2 cut(s) 54, 87
BamHI GGATCC 1 cut(s) 575
BanI GGYRCC 1 cut(s) 214
BauI CACGAG 1 cut(s) 362
BbrPI CACGTG 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 239
BccI CCATC 3 cut(s) 232, 361, 577
BceAI ACGGC 2 cut(s) 170, 191
BciVI GTATCC 1 cut(s) 598
BcnI CCSGG 1 cut(s) 580
BcoDI GTCTC 5 cut(s) 110, 117, 217, 308, 506
BfaI CTAG 2 cut(s) 479, 738
BfmI CTRYAG 1 cut(s) 193
BfuI GTATCC 1 cut(s) 598
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
BmcAI AGTACT 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 580
Bme18I GGWCC 1 cut(s) 732
BmeRI GACNNNNNGTC 1 cut(s) 667
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 732
BmiI GGNNCC 2 cut(s) 216, 577
BmrFI CCNGG 1 cut(s) 580
BmsI GCATC 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 728
BpuEI CTTGAG 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 580
BsaAI YACGTR 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bse1I ACTGG 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 80, 525
BseMII CTCAG 4 cut(s) 121, 425, 727, 742
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 301
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 2 cut(s) 87, 579
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 5 cut(s) 110, 117, 217, 308, 506
BsmBI CGTCTC 4 cut(s) 110, 117, 308, 506
BsmFI GGGAC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 404
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 329
Bsp143I GATC 2 cut(s) 437, 575
BspACI CCGC 5 cut(s) 159, 183, 204, 218, 557
BspCNI CTCAG 4 cut(s) 120, 426, 726, 741
BspLI GGNNCC 2 cut(s) 216, 577
BspPI GGATC 3 cut(s) 432, 570, 583
BspT107I GGYRCC 1 cut(s) 214
BspTNI GGTCTC 1 cut(s) 217
BsrBI CCGCTC 1 cut(s) 557
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 437, 575
BssSI CACGAG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 362
Bst4CI ACNGT 5 cut(s) 70, 214, 228, 302, 550
Bst6I CTCTTC 3 cut(s) 169, 504, 524
BstBAI YACGTR 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 431
BstDEI CTNAG 5 cut(s) 107, 119, 434, 713, 728
BstF5I GGATG 2 cut(s) 80, 525
BstKTI GATC 2 cut(s) 440, 578
BstMAI GTCTC 5 cut(s) 110, 117, 217, 308, 506
BstMBI GATC 2 cut(s) 437, 575
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 182, 701
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 1 cut(s) 578
BstSFI CTRYAG 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 437, 575
BstYI RGATCY 2 cut(s) 437, 575
BsuI GTATCC 1 cut(s) 598
BtsCI GGATG 2 cut(s) 80, 525
Cac8I GCNNGC 1 cut(s) 431
Cfr13I GGNCC 1 cut(s) 732
Csp6I GTAC 4 cut(s) 111, 249, 443, 491
CviAII CATG 2 cut(s) 39, 644
CviJI RGCY 8 cut(s) 92, 149, 176, 334, 344, 351, 478, 657
CviKI_1 RGCY 8 cut(s) 92, 149, 176, 334, 344, 351, 478, 657
CviQI GTAC 4 cut(s) 111, 249, 443, 491
DdeI CTNAG 5 cut(s) 107, 119, 434, 713, 728
DpnI GATC 2 cut(s) 439, 577
DpnII GATC 2 cut(s) 437, 575
DriI GACNNNNNGTC 1 cut(s) 667
Eam1104I CTCTTC 3 cut(s) 169, 504, 524
Eam1105I GACNNNNNGTC 1 cut(s) 667
EarI CTCTTC 3 cut(s) 169, 504, 524
EciI GGCGGA 3 cut(s) 148, 172, 193
Eco31I GGTCTC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 732
Eco72I CACGTG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 732
EcoRV GATATC 1 cut(s) 130
Esp3I CGTCTC 4 cut(s) 110, 117, 308, 506
FaeI CATG 2 cut(s) 42, 647
FaiI YATR 8 cut(s) 40, 200, 545, 620, 624, 626, 639, 645
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FaqI GGGAC 1 cut(s) 285
FatI CATG 2 cut(s) 38, 643
FauI CCCGC 1 cut(s) 550
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 2 cut(s) 67, 532
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 2 cut(s) 479, 738
GluI GCNGC 1 cut(s) 218
HapII CCGG 2 cut(s) 87, 579
Hin1II CATG 2 cut(s) 42, 647
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 7 cut(s) 14, 58, 143, 539, 599, 662, 668
HpaII CCGG 2 cut(s) 87, 579
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 190, 361
Hpy188I TCNGA 6 cut(s) 54, 172, 595, 604, 661, 667
Hpy188III TCNNGA 5 cut(s) 140, 362, 573, 707, 730
Hpy8I GTNNAC 2 cut(s) 190, 361
Hpy99I CGWCG 5 cut(s) 27, 58, 137, 191, 232
HpyAV CCTTC 2 cut(s) 332, 465
HpyCH4III ACNGT 5 cut(s) 70, 214, 228, 302, 550
HpyCH4IV ACGT 3 cut(s) 103, 135, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 701
HpyF3I CTNAG 5 cut(s) 107, 119, 434, 713, 728
HpySE526I ACGT 3 cut(s) 103, 135, 276
Hsp92II CATG 2 cut(s) 42, 647
Kzo9I GATC 2 cut(s) 437, 575
LmnI GCTCC 2 cut(s) 89, 554
LpnPI CCDG 6 cut(s) 100, 365, 558, 592, 702, 715
LweI GCATC 1 cut(s) 682
MaeI CTAG 2 cut(s) 479, 738
MaeII ACGT 3 cut(s) 103, 135, 276
MaeIII GTNAC 2 cut(s) 208, 464
MalI GATC 2 cut(s) 439, 577
MbiI CCGCTC 1 cut(s) 557
MboI GATC 2 cut(s) 437, 575
MboII GAAGA 9 cut(s) 23, 26, 144, 156, 244, 276, 521, 541, 712
MflI RGATCY 2 cut(s) 437, 575
MluCI AATT 3 cut(s) 9, 416, 634
MlyI GAGTC 4 cut(s) 8, 548, 656, 677
MmeI TCCRAC 3 cut(s) 77, 86, 532
MnlI CCTC 7 cut(s) 166, 166, 172, 178, 338, 510, 607
MseI TTAA 2 cut(s) 312, 684
MspI CCGG 2 cut(s) 87, 579
MspR9I CCNGG 1 cut(s) 580
Mva1269I GAATGC 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 182, 701
NciI CCSGG 1 cut(s) 580
NdeII GATC 2 cut(s) 437, 575
NlaIII CATG 2 cut(s) 42, 647
NlaIV GGNNCC 2 cut(s) 216, 577
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 1 cut(s) 647
PaeR7I CTCGAG 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 3 cut(s) 58, 143, 599
PkrI GCNGC 1 cut(s) 219
PleI GAGTC 4 cut(s) 8, 547, 656, 676
PmaCI CACGTG 1 cut(s) 277
PmlI CACGTG 1 cut(s) 277
PpsI GAGTC 4 cut(s) 8, 547, 656, 676
Ppu21I YACGTR 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 732
Psp5II RGGWCCY 1 cut(s) 732
PspCI CACGTG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 216, 577
PspPI GGNCC 1 cut(s) 732
PspPPI RGGWCCY 1 cut(s) 732
PspXI VCTCGAGB 1 cut(s) 329
PsuI RGATCY 2 cut(s) 437, 575
RsaI GTAC 4 cut(s) 112, 250, 444, 492
RsaNI GTAC 4 cut(s) 111, 249, 443, 491
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 312, 684
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 2 cut(s) 437, 575
Sau96I GGNCC 1 cut(s) 732
ScaI AGTACT 1 cut(s) 112
SchI GAGTC 4 cut(s) 8, 548, 656, 677
ScrFI CCNGG 1 cut(s) 580
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 329
SinI GGWCC 1 cut(s) 732
SlaI CTCGAG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 329, 705
SmoI CTYRAG 2 cut(s) 329, 705
Sse9I AATT 3 cut(s) 9, 416, 634
SsiI CCGC 5 cut(s) 159, 183, 204, 218, 557
SspMI CTAG 2 cut(s) 479, 738
StyD4I CCNGG 1 cut(s) 578
TaaI ACNGT 5 cut(s) 70, 214, 228, 302, 550
TaiI ACGT 3 cut(s) 106, 138, 279
TaqI TCGA 5 cut(s) 25, 132, 189, 230, 330
TasI AATT 3 cut(s) 9, 416, 634
TatI WGTACW 1 cut(s) 110
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 3 cut(s) 58, 143, 599
Tru1I TTAA 2 cut(s) 312, 684
Tru9I TTAA 2 cut(s) 312, 684
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 522, 612, 665
TspGWI ACGGA 4 cut(s) 11, 430, 483, 508
VpaK11BI GGWCC 1 cut(s) 732
XceI RCATGY 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 2 cut(s) 479, 738
ZrmI AGTACT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.