FvH4_6g12850

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016161
Physical Location & Seq
Reverse (-)
7788342 .. 7789508
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12850.t1

Sequence Viewer

Length: 747 bp
ATGACCAAGATCGATGCCCTCCGTCGATTCCTCCTCCCCTGCTTCGCCCCCTCCGCCACCTCCTCCTCCGCCGCCACCCCCACCAAGAAACGCCTCAGCACCTCCCTCCGCGACGACATCCCCGACGCCGACCTTGACTCCTCCTCCGCAGCCGCCGCCCAAGACTCCGACCCTTCCTCCCCCTCCGCCGCGTCGGTGACCTCCTCCGTCGCGCAGCCCAGGCCGTCGAAGTCGATGGTGATCGGGACCATCTTCGGGCACCGCCGAGGCCACGTGTGGTTCTGCGTCCAGCACGACCGCCTCTCGACCCGACCCGCGCTCCTCCTGGAGCTCTCGATCTTGACCCACCAGCTCGTCAAGGAAATGCGGTTCGGGTTGGTCCGGATCACCCTCGAGTGCGACGACCGCTCCGATCTCGCCACGTGTCCCCTCCGCTCCGTCCCCGTCTGGTCCCTCCACTGCAACGGCCGCAAGCTCGGGTTCGCCGCCCGGAGGAAAGCCGGCGACAAAGTCCGCCTCATGCTCAAGACCATGGAGTCCACCACCGTCGGGGCCGGGGCTCTACCCGCCGGGTTCGGGTTCGGGTCGGGCACGTCGGACTCGGACGGCCCGGTTATGTACATGAGGGCGAATTACGAGCACGTGATCGGGAGCGCGGACTCGGAGTCGTTTCATCTGATCAACCCGGATCAGTGCCCGGGTCAAGAACTCAGTGTCTTCTTGCTCCGGTCCAGAAACTCGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

249

Amino Acids

26.78

Weight (kDa)

9.0

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 80 - 243 2.1e-59 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37880
fragaria_vesca FvH4_6g12850
malus_domestica MD04G1137600.v1.1 MD12G1152400.v1.1
prunus_persica Prupe.6G263600_v2.0.a1
pyrus_communis pycom04g12600
rosa_chinensis RchiOBHm_Chr3g0464851
rosa_laevigata RLG00000024669
rosa_multiflora Rmu_sc0007114.1_g000004
rosa_roxburghii Rroxscaffold_6G00415390
rosa_rugosa Rorug03G0074400
rosa_samantha Rh3BG137200 Rh3CG139800 Rh3DG138600
rosa_wichuraiana Rw3G011210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 535
AccB1I GGYRCC 1 cut(s) 258
AccBSI CCGCTC 2 cut(s) 408, 435
AccII CGCG 5 cut(s) 111, 191, 212, 317, 656
AccIII TCCGGA 1 cut(s) 381
AclWI GGATC 2 cut(s) 392, 696
AcoI YGGCCR 1 cut(s) 466
AcvI CACGTG 3 cut(s) 274, 423, 643
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 4 cut(s) 255, 492, 549, 576
AflIII ACRYGT 2 cut(s) 273, 422
AhdI GACNNNNNGTC 1 cut(s) 664
AjiI CACGTC 1 cut(s) 594
AjnI CCWGG 2 cut(s) 218, 324
AloI GAACNNNNNNTCC 2 cut(s) 353, 385
AluBI AGCT 3 cut(s) 331, 352, 475
AluI AGCT 3 cut(s) 331, 352, 475
Alw21I GWGCWC 2 cut(s) 333, 642
AlwI GGATC 2 cut(s) 392, 696
Ama87I CYCGRG 3 cut(s) 392, 476, 697
Aor13HI TCCGGA 1 cut(s) 381
AoxI GGCC 5 cut(s) 221, 268, 466, 552, 607
ApeKI GCWGC 2 cut(s) 149, 214
AspLEI GCGC 3 cut(s) 214, 319, 656
AspS9I GGNCC 6 cut(s) 246, 379, 450, 552, 608, 729
AsuC2I CCSGG 7 cut(s) 490, 556, 571, 611, 686, 698, 699
AsuHPI GGTGA 3 cut(s) 208, 250, 379
AvaI CYCGRG 3 cut(s) 392, 476, 697
AvaII GGWCC 4 cut(s) 246, 379, 450, 729
BaeGI GKGCMC 3 cut(s) 261, 593, 698
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 2 cut(s) 333, 562
BbrPI CACGTG 3 cut(s) 274, 423, 643
BbsI GAAGAC 1 cut(s) 709
Bbv12I GWGCWC 2 cut(s) 333, 642
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 161, 226
BccI CCATC 2 cut(s) 229, 257
BceAI ACGGC 3 cut(s) 208, 481, 622
BciT130I CCWGG 2 cut(s) 220, 326
BclI TGATCA 1 cut(s) 678
BcnI CCSGG 7 cut(s) 490, 556, 571, 611, 686, 698, 699
BisI GCNGC 8 cut(s) 72, 150, 153, 156, 189, 215, 469, 486
BlsI GCNGC 8 cut(s) 73, 151, 154, 157, 190, 216, 470, 487
Bme1390I CCNGG 9 cut(s) 220, 326, 490, 556, 571, 611, 686, 698, 699
Bme18I GGWCC 4 cut(s) 246, 379, 450, 729
BmeRI GACNNNNNGTC 1 cut(s) 664
BmeT110I CYCGRG 3 cut(s) 392, 476, 697
BmgBI CACGTC 1 cut(s) 594
BmgT120I GGNCC 6 cut(s) 246, 379, 450, 552, 608, 729
BmiI GGNNCC 4 cut(s) 247, 260, 452, 553
BmrFI CCNGG 9 cut(s) 220, 326, 490, 556, 571, 611, 686, 698, 699
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 709
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 7 cut(s) 490, 556, 571, 611, 686, 698, 699
Bsa29I ATCGAT 1 cut(s) 12
BsaAI YACGTR 3 cut(s) 274, 423, 643
BsaBI GATNNNNATC 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 5 cut(s) 218, 265, 531, 555, 697
BsaWI WCCGGW 2 cut(s) 381, 726
Bsc4I CCNNNNNNNGG 4 cut(s) 255, 492, 549, 576
Bse118I RCCGGY 1 cut(s) 500
Bse8I GATNNNNATC 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 381
BseBI CCWGG 2 cut(s) 220, 326
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 5 cut(s) 218, 265, 531, 555, 697
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 4 cut(s) 255, 492, 549, 576
BseMII CTCAG 2 cut(s) 109, 724
BseRI GAGGAG 7 cut(s) 23, 52, 55, 130, 133, 193, 311
BseSI GKGCMC 3 cut(s) 261, 593, 698
BseX3I CGGCCG 1 cut(s) 466
BseXI GCAGC 2 cut(s) 161, 226
Bsh1236I CGCG 5 cut(s) 111, 191, 212, 317, 656
Bsh1285I CGRYCG 3 cut(s) 298, 406, 469
BshFI GGCC 5 cut(s) 223, 270, 468, 554, 609
BshNI GGYRCC 1 cut(s) 258
BshVI ATCGAT 1 cut(s) 12
BsiEI CGRYCG 3 cut(s) 298, 406, 469
BsiHKAI GWGCWC 2 cut(s) 333, 642
BsiHKCI CYCGRG 3 cut(s) 392, 476, 697
BsiSI CCGG 9 cut(s) 382, 490, 501, 555, 570, 611, 686, 698, 727
BslFI GGGAC 4 cut(s) 259, 411, 425, 436
BslI CCNNNNNNNGG 4 cut(s) 255, 492, 549, 576
BsmFI GGGAC 4 cut(s) 259, 411, 425, 436
BsnI GGCC 5 cut(s) 223, 270, 468, 554, 609
BsoBI CYCGRG 3 cut(s) 392, 476, 697
Bsp1286I GDGCHC 6 cut(s) 261, 333, 562, 593, 642, 698
Bsp13I TCCGGA 1 cut(s) 381
Bsp1407I TGTACA 1 cut(s) 618
Bsp143I GATC 8 cut(s) 9, 240, 336, 384, 412, 645, 678, 688
Bsp19I CCATGG 1 cut(s) 531
BspANI GGCC 5 cut(s) 223, 270, 468, 554, 609
BspCNI CTCAG 2 cut(s) 108, 723
BspDI ATCGAT 1 cut(s) 12
BspEI TCCGGA 1 cut(s) 381
BspFNI CGCG 5 cut(s) 111, 191, 212, 317, 656
BspLI GGNNCC 4 cut(s) 247, 260, 452, 553
BspPI GGATC 2 cut(s) 392, 696
BspT107I GGYRCC 1 cut(s) 258
BsrBI CCGCTC 2 cut(s) 408, 435
BsrFI RCCGGY 1 cut(s) 500
BsrGI TGTACA 1 cut(s) 618
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 5 cut(s) 218, 265, 531, 555, 697
BssMI GATC 8 cut(s) 9, 240, 336, 384, 412, 645, 678, 688
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 531
Bst2UI CCWGG 2 cut(s) 220, 326
Bst4CI ACNGT 1 cut(s) 547
BstACI GRCGYC 1 cut(s) 126
BstAUI TGTACA 1 cut(s) 618
BstBAI YACGTR 3 cut(s) 274, 423, 643
BstC8I GCNNGC 2 cut(s) 473, 502
BstDEI CTNAG 2 cut(s) 95, 710
BstDSI CCRYGG 1 cut(s) 531
BstEII GGTNACC 1 cut(s) 196
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 5 cut(s) 111, 191, 212, 317, 656
BstHHI GCGC 3 cut(s) 214, 319, 656
BstKTI GATC 8 cut(s) 12, 243, 339, 387, 415, 648, 681, 691
BstMBI GATC 8 cut(s) 9, 240, 336, 384, 412, 645, 678, 688
BstMCI CGRYCG 3 cut(s) 298, 406, 469
BstMWI GCNNNNNNNGC 6 cut(s) 53, 155, 220, 405, 468, 566
BstNI CCWGG 2 cut(s) 220, 326
BstPI GGTNACC 1 cut(s) 196
BstSCI CCNGG 9 cut(s) 218, 324, 488, 554, 569, 609, 684, 696, 697
BstSLI GKGCMC 3 cut(s) 261, 593, 698
BstUI CGCG 5 cut(s) 111, 191, 212, 317, 656
BstV1I GCAGC 2 cut(s) 161, 226
BstV2I GAAGAC 1 cut(s) 709
BstZI CGGCCG 1 cut(s) 466
Bsu15I ATCGAT 1 cut(s) 12
BsuRI GGCC 5 cut(s) 223, 270, 468, 554, 609
BsuTUI ATCGAT 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 531
BtrI CACGTC 1 cut(s) 594
BtsCI GGATG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 3 cut(s) 457, 698, 718
Cac8I GCNNGC 2 cut(s) 473, 502
CfoI GCGC 3 cut(s) 214, 319, 656
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 6 cut(s) 246, 379, 450, 552, 608, 729
Cfr9I CCCGGG 1 cut(s) 697
ClaI ATCGAT 1 cut(s) 12
CseI GACGC 3 cut(s) 134, 180, 274
Csp6I GTAC 1 cut(s) 619
CviAII CATG 3 cut(s) 520, 532, 622
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 2 cut(s) 95, 710
DpnI GATC 8 cut(s) 11, 242, 338, 386, 414, 647, 680, 690
DpnII GATC 8 cut(s) 9, 240, 336, 384, 412, 645, 678, 688
DrdI GACNNNNNNGTC 1 cut(s) 535
DriI GACNNNNNGTC 1 cut(s) 664
DseDI GACNNNNNNGTC 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 466
EagI CGGCCG 1 cut(s) 466
Eam1105I GACNNNNNGTC 1 cut(s) 664
EciI GGCGGA 4 cut(s) 43, 58, 175, 503
Ecl136II GAGCTC 1 cut(s) 331
EclXI CGGCCG 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 531
Eco24I GRGCYC 2 cut(s) 333, 562
Eco47I GGWCC 4 cut(s) 246, 379, 450, 729
Eco52I CGGCCG 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 331
Eco72I CACGTG 3 cut(s) 274, 423, 643
Eco88I CYCGRG 3 cut(s) 392, 476, 697
Eco91I GGTNACC 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 331
EcoO65I GGTNACC 1 cut(s) 196
EcoRII CCWGG 2 cut(s) 218, 324
EcoT14I CCWWGG 1 cut(s) 531
EcoT38I GRGCYC 2 cut(s) 333, 562
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 3 cut(s) 523, 535, 625
FaiI YATR 4 cut(s) 521, 533, 617, 623
FaqI GGGAC 4 cut(s) 259, 411, 425, 436
FatI CATG 3 cut(s) 519, 531, 621
FauI CCCGC 2 cut(s) 322, 574
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 8 cut(s) 72, 150, 153, 156, 189, 215, 469, 486
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 2 cut(s) 333, 562
Fsp4HI GCNGC 8 cut(s) 72, 150, 153, 156, 189, 215, 469, 486
GlaI GCGC 3 cut(s) 213, 318, 655
GluI GCNGC 8 cut(s) 72, 150, 153, 156, 189, 215, 469, 486
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 5 cut(s) 223, 270, 468, 554, 609
HapII CCGG 9 cut(s) 382, 490, 501, 555, 570, 611, 686, 698, 727
HgaI GACGC 3 cut(s) 134, 180, 274
HhaI GCGC 3 cut(s) 214, 319, 656
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 3 cut(s) 523, 535, 625
Hin6I GCGC 3 cut(s) 212, 317, 654
HinP1I GCGC 3 cut(s) 212, 317, 654
HinfI GANTC 7 cut(s) 27, 137, 164, 536, 599, 659, 665
HpaII CCGG 9 cut(s) 382, 490, 501, 555, 570, 611, 686, 698, 727
HphI GGTGA 3 cut(s) 208, 250, 379
Hpy166II GTNNAC 1 cut(s) 540
Hpy188I TCNGA 7 cut(s) 169, 412, 598, 604, 664, 678, 746
Hpy188III TCNNGA 9 cut(s) 244, 304, 334, 340, 382, 526, 649, 704, 732
Hpy8I GTNNAC 1 cut(s) 540
Hpy99I CGWCG 9 cut(s) 27, 116, 128, 196, 212, 229, 404, 551, 598
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 4 cut(s) 273, 422, 593, 642
HpyCH4V TGCA 1 cut(s) 462
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 155, 220, 405, 468, 566
HpyF3I CTNAG 2 cut(s) 95, 710
HpySE526I ACGT 4 cut(s) 273, 422, 593, 642
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 3 cut(s) 523, 535, 625
HspAI GCGC 3 cut(s) 212, 317, 654
Kpn2I TCCGGA 1 cut(s) 381
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 8 cut(s) 9, 240, 336, 384, 412, 645, 678, 688
LmnI GCTCC 6 cut(s) 324, 328, 413, 440, 651, 729
Lsp1109I GCAGC 2 cut(s) 161, 226
LweI GCATC 1 cut(s) 4
MaeII ACGT 4 cut(s) 273, 422, 593, 642
MaeIII GTNAC 1 cut(s) 196
MalI GATC 8 cut(s) 11, 242, 338, 386, 414, 647, 680, 690
MbiI CCGCTC 2 cut(s) 408, 435
MboI GATC 8 cut(s) 9, 240, 336, 384, 412, 645, 678, 688
MboII GAAGA 2 cut(s) 244, 709
MhlI GDGCHC 6 cut(s) 261, 333, 562, 593, 642, 698
MluCI AATT 1 cut(s) 631
MlyI GAGTC 6 cut(s) 131, 158, 545, 593, 653, 674
MmeI TCCRAC 2 cut(s) 192, 576
MroI TCCGGA 1 cut(s) 381
MroNI GCCGGC 1 cut(s) 500
MspI CCGG 9 cut(s) 382, 490, 501, 555, 570, 611, 686, 698, 727
MspR9I CCNGG 9 cut(s) 220, 326, 490, 556, 571, 611, 686, 698, 699
MvaI CCWGG 2 cut(s) 220, 326
MvnI CGCG 5 cut(s) 111, 191, 212, 317, 656
MwoI GCNNNNNNNGC 6 cut(s) 53, 155, 220, 405, 468, 566
NaeI GCCGGC 1 cut(s) 502
NciI CCSGG 7 cut(s) 490, 556, 571, 611, 686, 698, 699
NcoI CCATGG 1 cut(s) 531
NdeII GATC 8 cut(s) 9, 240, 336, 384, 412, 645, 678, 688
NgoMIV GCCGGC 1 cut(s) 500
NlaIII CATG 3 cut(s) 523, 535, 625
NlaIV GGNNCC 4 cut(s) 247, 260, 452, 553
NmeAIII GCCGAG 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 392
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 399, 408
PdiI GCCGGC 1 cut(s) 502
PfeI GAWTC 1 cut(s) 27
PflFI GACNNNGTC 1 cut(s) 509
PfoI TCCNGGA 1 cut(s) 324
PkrI GCNGC 8 cut(s) 73, 151, 154, 157, 190, 216, 470, 487
PleI GAGTC 6 cut(s) 131, 158, 544, 593, 653, 673
PmaCI CACGTG 3 cut(s) 274, 423, 643
PmlI CACGTG 3 cut(s) 274, 423, 643
PpsI GAGTC 6 cut(s) 131, 158, 544, 593, 653, 673
Ppu21I YACGTR 3 cut(s) 274, 423, 643
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 218, 324
PspCI CACGTG 3 cut(s) 274, 423, 643
PspEI GGTNACC 1 cut(s) 196
PspGI CCWGG 2 cut(s) 218, 324
PspN4I GGNNCC 4 cut(s) 247, 260, 452, 553
PspPI GGNCC 6 cut(s) 246, 379, 450, 552, 608, 729
PspXI VCTCGAGB 1 cut(s) 392
PsyI GACNNNGTC 1 cut(s) 509
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
SacI GAGCTC 1 cut(s) 333
SatI GCNGC 8 cut(s) 72, 150, 153, 156, 189, 215, 469, 486
Sau3AI GATC 8 cut(s) 9, 240, 336, 384, 412, 645, 678, 688
Sau96I GGNCC 6 cut(s) 246, 379, 450, 552, 608, 729
SchI GAGTC 6 cut(s) 131, 158, 545, 593, 653, 674
ScrFI CCNGG 9 cut(s) 220, 326, 490, 556, 571, 611, 686, 698, 699
SduI GDGCHC 6 cut(s) 261, 333, 562, 593, 642, 698
SfaNI GCATC 1 cut(s) 4
Sfr274I CTCGAG 1 cut(s) 392
SinI GGWCC 4 cut(s) 246, 379, 450, 729
SlaI CTCGAG 1 cut(s) 392
SmaI CCCGGG 1 cut(s) 699
SmlI CTYRAG 2 cut(s) 392, 524
SmoI CTYRAG 2 cut(s) 392, 524
Sse9I AATT 1 cut(s) 631
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 9 cut(s) 218, 324, 488, 554, 569, 609, 684, 696, 697
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 4 cut(s) 276, 425, 596, 645
TaqI TCGA 7 cut(s) 12, 25, 227, 233, 305, 335, 393
TaqII GACCGA 1 cut(s) 730
TasI AATT 1 cut(s) 631
TatI WGTACW 1 cut(s) 618
TauI GCSGC 6 cut(s) 74, 155, 158, 191, 471, 488
TfiI GAWTC 1 cut(s) 27
TscAI CASTG 3 cut(s) 464, 698, 718
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 2 cut(s) 149, 214
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 662
TspGWI ACGGA 3 cut(s) 11, 196, 427
TspMI CCCGGG 1 cut(s) 697
TspRI CASTG 3 cut(s) 464, 698, 718
Tth111I GACNNNGTC 1 cut(s) 509
VpaK11BI GGWCC 4 cut(s) 246, 379, 450, 729
XhoI CTCGAG 1 cut(s) 392
XmaI CCCGGG 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.