Rh3BG137200

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016161
Physical Location & Seq
Reverse (-)
11632966 .. 11634028
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG137200.1

Sequence Viewer

Length: 726 bp
ATGACCAAGATCGATTCCCTCCGTCGATTCCTCCTCCCCTGCTTCGCCCCCTCCTCCCCCGCCGCCGCCACCGCCACCAAGAAACGCCTCAGCACCTCCCTCCGCGACGACATCGTCGACGACCAAGAACCCGCCCAAGACTCCGACCCTTCCTCCCCCACCGCCTCCTCCACGTCAGCGCCCTCCTCCGCCCAGCCCCGGCAGTCGAAGTCGATGGTGATCGGCACCATCTTCGGGCACCGCCGCGGCCACGTCTGGTTCTGCGTCCAGCACGACCGCCTCTCGACCCGACCCGCGCTCCTCCTGGAGCTCTCCATCTTGACCCACCAGCTCGTCAAGGAAATGCGGTTCGGGTTGGTCCGGATCACCCTCGAGTGCGACGACCGCTCCTCCGATCTCGCCACGTGTCCTCTCCGGTCCGTCCCCGTCTGGGCGCTGCACTGCAACGGCCGCAAGCTCGGGTTCGCCGCCCGGAGGAAAGCCGGCGACAAAGTCCGCCTGATGCTGAAGGCCATGGAGTCAACGACCGTCGGAGCCGGGGCCTTGCCAGCCGGGTTCGGGTTCGGGTCCGGGTCGTCGGACTCGGAGGGCCCGGTTATGTACATGAGGTCGAATTACGAGCACGTGGTTGGGAGCGCCGACTCGGAGTCGTTTCATCTGATCAACCCGGATCAGTTCCCGGGTCAAGAACTCAGTGTCTTCTTGCTCAGGTCCAGAAACTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

241

Amino Acids

26.28

Weight (kDa)

9.09

Isoelectric Point (pI)

61.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 73 - 237 3.3e-58 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37880
fragaria_vesca FvH4_6g12850
malus_domestica MD04G1137600.v1.1 MD12G1152400.v1.1
prunus_persica Prupe.6G263600_v2.0.a1
pyrus_communis pycom04g12600
rosa_chinensis RchiOBHm_Chr3g0464851
rosa_laevigata RLG00000024669
rosa_multiflora Rmu_sc0007114.1_g000004
rosa_roxburghii Rroxscaffold_6G00415390
rosa_rugosa Rorug03G0074400
rosa_samantha Rh3BG137200 Rh3CG139800 Rh3DG138600
rosa_wichuraiana Rw3G011210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AccB1I GGYRCC 2 cut(s) 224, 237
AccBSI CCGCTC 1 cut(s) 387
AccI GTMKAC 1 cut(s) 117
AccII CGCG 3 cut(s) 105, 246, 296
AccIII TCCGGA 1 cut(s) 360
AclWI GGATC 2 cut(s) 371, 678
AcoI YGGCCR 2 cut(s) 247, 448
AcuI CTGAAG 1 cut(s) 527
AcvI CACGTG 2 cut(s) 405, 625
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 5 cut(s) 198, 234, 430, 474, 558
AflIII ACRYGT 1 cut(s) 404
AhdI GACNNNNNGTC 1 cut(s) 646
AjiI CACGTC 2 cut(s) 174, 253
AjnI CCWGG 1 cut(s) 303
AloI GAACNNNNNNTCC 2 cut(s) 332, 364
AluBI AGCT 3 cut(s) 310, 331, 457
AluI AGCT 3 cut(s) 310, 331, 457
Alw21I GWGCWC 2 cut(s) 312, 624
AlwI GGATC 2 cut(s) 371, 678
Ama87I CYCGRG 3 cut(s) 371, 458, 679
Aor13HI TCCGGA 1 cut(s) 360
AoxI GGCC 5 cut(s) 247, 448, 510, 540, 589
ApaI GGGCCC 1 cut(s) 593
ApeKI GCWGC 1 cut(s) 436
AspLEI GCGC 4 cut(s) 181, 298, 436, 638
AspS9I GGNCC 7 cut(s) 358, 417, 540, 567, 589, 590, 711
AsuC2I CCSGG 9 cut(s) 199, 472, 538, 553, 571, 593, 668, 680, 681
AsuHPI GGTGA 2 cut(s) 229, 358
AvaI CYCGRG 3 cut(s) 371, 458, 679
AvaII GGWCC 4 cut(s) 358, 417, 567, 711
BaeGI GKGCMC 2 cut(s) 240, 593
BanI GGYRCC 2 cut(s) 224, 237
BanII GRGCYC 2 cut(s) 312, 593
BbrPI CACGTG 2 cut(s) 405, 625
BbsI GAAGAC 1 cut(s) 691
Bbv12I GWGCWC 2 cut(s) 312, 624
BbvCI CCTCAGC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 423
BccI CCATC 3 cut(s) 208, 236, 323
BceAI ACGGC 1 cut(s) 463
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 660
BcnI CCSGG 9 cut(s) 199, 472, 538, 553, 571, 593, 668, 680, 681
BfoI RGCGCY 3 cut(s) 182, 437, 639
BisI GCNGC 7 cut(s) 63, 66, 244, 247, 437, 451, 468
BlsI GCNGC 7 cut(s) 64, 67, 245, 248, 438, 452, 469
Bme18I GGWCC 4 cut(s) 358, 417, 567, 711
BmeRI GACNNNNNGTC 1 cut(s) 646
BmeT110I CYCGRG 3 cut(s) 371, 458, 679
BmgBI CACGTC 2 cut(s) 174, 253
BmgT120I GGNCC 7 cut(s) 358, 417, 540, 567, 589, 590, 711
BmiI GGNNCC 6 cut(s) 226, 239, 535, 541, 568, 591
BmsI GCATC 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 691
BpmI CTGGAG 1 cut(s) 326
Bpu10I CCTNAGC 2 cut(s) 89, 707
BpuMI CCSGG 9 cut(s) 199, 472, 538, 553, 571, 593, 668, 680, 681
Bsa29I ATCGAT 1 cut(s) 12
BsaAI YACGTR 2 cut(s) 405, 625
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 5 cut(s) 197, 244, 513, 537, 679
BsaWI WCCGGW 2 cut(s) 360, 414
BsaXI ACNNNNNCTCC 8 cut(s) 137, 167, 282, 312, 371, 374, 401, 404
Bsc4I CCNNNNNNNGG 5 cut(s) 198, 234, 430, 474, 558
Bse118I RCCGGY 1 cut(s) 482
Bse8I GATNNNNATC 1 cut(s) 218
BseAI TCCGGA 1 cut(s) 360
BseBI CCWGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 5 cut(s) 197, 244, 513, 537, 679
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 5 cut(s) 198, 234, 430, 474, 558
BseMII CTCAG 3 cut(s) 103, 706, 721
BseRI GAGGAG 6 cut(s) 23, 43, 157, 175, 290, 379
BseSI GKGCMC 2 cut(s) 240, 593
BseX3I CGGCCG 1 cut(s) 448
BseXI GCAGC 1 cut(s) 423
BseYI CCCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 3 cut(s) 105, 246, 296
Bsh1285I CGRYCG 4 cut(s) 277, 385, 451, 528
BshFI GGCC 5 cut(s) 249, 450, 512, 542, 591
BshNI GGYRCC 2 cut(s) 224, 237
BshVI ATCGAT 1 cut(s) 12
BsiEI CGRYCG 4 cut(s) 277, 385, 451, 528
BsiHKAI GWGCWC 2 cut(s) 312, 624
BsiHKCI CYCGRG 3 cut(s) 371, 458, 679
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 5 cut(s) 198, 234, 430, 474, 558
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 5 cut(s) 249, 450, 512, 542, 591
BsoBI CYCGRG 3 cut(s) 371, 458, 679
Bsp120I GGGCCC 1 cut(s) 589
Bsp1286I GDGCHC 4 cut(s) 240, 312, 593, 624
Bsp13I TCCGGA 1 cut(s) 360
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 6 cut(s) 9, 219, 363, 394, 660, 670
Bsp19I CCATGG 1 cut(s) 513
BspANI GGCC 5 cut(s) 249, 450, 512, 542, 591
BspCNI CTCAG 3 cut(s) 102, 705, 720
BspDI ATCGAT 1 cut(s) 12
BspEI TCCGGA 1 cut(s) 360
BspFNI CGCG 3 cut(s) 105, 246, 296
BspLI GGNNCC 6 cut(s) 226, 239, 535, 541, 568, 591
BspPI GGATC 2 cut(s) 371, 678
BspT107I GGYRCC 2 cut(s) 224, 237
BsrBI CCGCTC 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 600
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 5 cut(s) 197, 244, 513, 537, 679
BssMI GATC 6 cut(s) 9, 219, 363, 394, 660, 670
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 529
BstAUI TGTACA 1 cut(s) 600
BstBAI YACGTR 2 cut(s) 405, 625
BstC8I GCNNGC 3 cut(s) 455, 484, 549
BstDEI CTNAG 3 cut(s) 89, 692, 707
BstDSI CCRYGG 2 cut(s) 244, 513
BstFNI CGCG 3 cut(s) 105, 246, 296
BstH2I RGCGCY 3 cut(s) 182, 437, 639
BstHHI GCGC 4 cut(s) 181, 298, 436, 638
BstKTI GATC 6 cut(s) 12, 222, 366, 397, 663, 673
BstMBI GATC 6 cut(s) 9, 219, 363, 394, 660, 670
BstMCI CGRYCG 4 cut(s) 277, 385, 451, 528
BstMWI GCNNNNNNNGC 4 cut(s) 71, 384, 450, 548
BstNI CCWGG 1 cut(s) 305
BstSLI GKGCMC 2 cut(s) 240, 593
BstUI CGCG 3 cut(s) 105, 246, 296
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 691
BstZI CGGCCG 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 12
BsuRI GGCC 5 cut(s) 249, 450, 512, 542, 591
BsuTUI ATCGAT 1 cut(s) 12
BtgI CCRYGG 2 cut(s) 244, 513
BtrI CACGTC 2 cut(s) 174, 253
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 2 cut(s) 439, 700
Cac8I GCNNGC 3 cut(s) 455, 484, 549
CfoI GCGC 4 cut(s) 181, 298, 436, 638
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 7 cut(s) 358, 417, 540, 567, 589, 590, 711
Cfr42I CCGCGG 1 cut(s) 247
Cfr9I CCCGGG 1 cut(s) 679
ClaI ATCGAT 1 cut(s) 12
CpoI CGGWCCG 1 cut(s) 417
CseI GACGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 601
CspI CGGWCCG 1 cut(s) 417
CviAII CATG 2 cut(s) 514, 604
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 3 cut(s) 89, 692, 707
DpnI GATC 6 cut(s) 11, 221, 365, 396, 662, 672
DpnII GATC 6 cut(s) 9, 219, 363, 394, 660, 670
DrdI GACNNNNNNGTC 1 cut(s) 113
DriI GACNNNNNGTC 1 cut(s) 646
DseDI GACNNNNNNGTC 1 cut(s) 113
EaeI YGGCCR 2 cut(s) 247, 448
EagI CGGCCG 1 cut(s) 448
Eam1105I GACNNNNNGTC 1 cut(s) 646
EciI GGCGGA 2 cut(s) 178, 485
Ecl136II GAGCTC 1 cut(s) 310
EclXI CGGCCG 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 2 cut(s) 312, 593
Eco47I GGWCC 4 cut(s) 358, 417, 567, 711
Eco52I CGGCCG 1 cut(s) 448
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 527
Eco72I CACGTG 2 cut(s) 405, 625
Eco88I CYCGRG 3 cut(s) 371, 458, 679
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 2 cut(s) 540, 589
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 2 cut(s) 312, 593
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 2 cut(s) 517, 607
FaiI YATR 3 cut(s) 515, 599, 605
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 513, 603
FauI CCCGC 3 cut(s) 67, 139, 301
FbaI TGATCA 1 cut(s) 660
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 7 cut(s) 63, 66, 244, 247, 437, 451, 468
FriOI GRGCYC 2 cut(s) 312, 593
Fsp4HI GCNGC 7 cut(s) 63, 66, 244, 247, 437, 451, 468
GlaI GCGC 4 cut(s) 180, 297, 435, 637
GluI GCNGC 7 cut(s) 63, 66, 244, 247, 437, 451, 468
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 3 cut(s) 182, 437, 639
HaeIII GGCC 5 cut(s) 249, 450, 512, 542, 591
HgaI GACGC 1 cut(s) 253
HhaI GCGC 4 cut(s) 181, 298, 436, 638
Hin1II CATG 2 cut(s) 517, 607
Hin6I GCGC 4 cut(s) 179, 296, 434, 636
HinP1I GCGC 4 cut(s) 179, 296, 434, 636
HincII GTYRAC 2 cut(s) 118, 522
HindII GTYRAC 2 cut(s) 118, 522
HinfI GANTC 7 cut(s) 14, 27, 140, 518, 581, 641, 647
HphI GGTGA 2 cut(s) 229, 358
Hpy166II GTNNAC 2 cut(s) 118, 522
Hpy188I TCNGA 7 cut(s) 145, 394, 533, 580, 586, 646, 660
Hpy188III TCNNGA 5 cut(s) 283, 319, 361, 686, 714
Hpy8I GTNNAC 2 cut(s) 118, 522
Hpy99I CGWCG 7 cut(s) 27, 110, 119, 122, 383, 533, 580
HpyAV CCTTC 2 cut(s) 159, 502
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 4 cut(s) 173, 252, 404, 624
HpyCH4V TGCA 2 cut(s) 439, 444
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 384, 450, 548
HpyF3I CTNAG 3 cut(s) 89, 692, 707
HpySE526I ACGT 4 cut(s) 173, 252, 404, 624
Hsp92II CATG 2 cut(s) 517, 607
HspAI GCGC 4 cut(s) 179, 296, 434, 636
Kpn2I TCCGGA 1 cut(s) 360
KroI GCCGGC 1 cut(s) 482
KroNI GCCGGC 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 660
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 6 cut(s) 9, 219, 363, 394, 660, 670
LmnI GCTCC 5 cut(s) 303, 307, 392, 533, 633
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 1 cut(s) 492
MaeII ACGT 4 cut(s) 173, 252, 404, 624
MalI GATC 6 cut(s) 11, 221, 365, 396, 662, 672
MbiI CCGCTC 1 cut(s) 387
MboI GATC 6 cut(s) 9, 219, 363, 394, 660, 670
MboII GAAGA 2 cut(s) 223, 691
MhlI GDGCHC 4 cut(s) 240, 312, 593, 624
MluCI AATT 1 cut(s) 613
MlyI GAGTC 5 cut(s) 134, 527, 575, 635, 656
MmeI TCCRAC 3 cut(s) 168, 511, 558
MroI TCCGGA 1 cut(s) 360
MroNI GCCGGC 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 3 cut(s) 105, 246, 296
MwoI GCNNNNNNNGC 4 cut(s) 71, 384, 450, 548
NaeI GCCGGC 1 cut(s) 484
NciI CCSGG 9 cut(s) 199, 472, 538, 553, 571, 593, 668, 680, 681
NcoI CCATGG 1 cut(s) 513
NdeII GATC 6 cut(s) 9, 219, 363, 394, 660, 670
NgoMIV GCCGGC 1 cut(s) 482
NlaIII CATG 2 cut(s) 517, 607
NlaIV GGNNCC 6 cut(s) 226, 239, 535, 541, 568, 591
PaeR7I CTCGAG 1 cut(s) 371
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 378
PdiI GCCGGC 1 cut(s) 484
PfeI GAWTC 2 cut(s) 14, 27
PflFI GACNNNGTC 2 cut(s) 113, 491
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 7 cut(s) 64, 67, 245, 248, 438, 452, 469
PleI GAGTC 5 cut(s) 134, 526, 575, 635, 655
PmaCI CACGTG 2 cut(s) 405, 625
PmlI CACGTG 2 cut(s) 405, 625
PpsI GAGTC 5 cut(s) 134, 526, 575, 635, 655
Ppu21I YACGTR 2 cut(s) 405, 625
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 303
PspCI CACGTG 2 cut(s) 405, 625
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 6 cut(s) 226, 239, 535, 541, 568, 591
PspOMI GGGCCC 1 cut(s) 589
PspPI GGNCC 7 cut(s) 358, 417, 540, 567, 589, 590, 711
PspXI VCTCGAGB 1 cut(s) 371
PsyI GACNNNGTC 2 cut(s) 113, 491
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
Rsr2I CGGWCCG 1 cut(s) 417
RsrII CGGWCCG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 312
SacII CCGCGG 1 cut(s) 247
SalI GTCGAC 1 cut(s) 116
SatI GCNGC 7 cut(s) 63, 66, 244, 247, 437, 451, 468
Sau3AI GATC 6 cut(s) 9, 219, 363, 394, 660, 670
Sau96I GGNCC 7 cut(s) 358, 417, 540, 567, 589, 590, 711
SchI GAGTC 5 cut(s) 134, 527, 575, 635, 656
SduI GDGCHC 4 cut(s) 240, 312, 593, 624
SfaNI GCATC 1 cut(s) 492
Sfr274I CTCGAG 1 cut(s) 371
Sfr303I CCGCGG 1 cut(s) 247
SgrBI CCGCGG 1 cut(s) 247
SgrDI CGTCGACG 1 cut(s) 116
SinI GGWCC 4 cut(s) 358, 417, 567, 711
SlaI CTCGAG 1 cut(s) 371
SmaI CCCGGG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 1 cut(s) 613
SstI GAGCTC 1 cut(s) 312
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 4 cut(s) 176, 255, 407, 627
TaqI TCGA 8 cut(s) 12, 25, 117, 206, 212, 284, 372, 611
TasI AATT 1 cut(s) 613
TatI WGTACW 1 cut(s) 600
TauI GCSGC 6 cut(s) 65, 68, 246, 249, 453, 470
TfiI GAWTC 2 cut(s) 14, 27
TscAI CASTG 2 cut(s) 446, 700
TseI GCWGC 1 cut(s) 436
TspDTI ATGAA 1 cut(s) 644
TspGWI ACGGA 2 cut(s) 11, 409
TspMI CCCGGG 1 cut(s) 679
TspRI CASTG 2 cut(s) 446, 700
Tth111I GACNNNGTC 2 cut(s) 113, 491
VpaK11BI GGWCC 4 cut(s) 358, 417, 567, 711
XhoI CTCGAG 1 cut(s) 371
XmaI CCCGGG 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.