Rw3G011210

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016161
Physical Location & Seq
Reverse (-)
10874222 .. 10875197
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011210.1

Sequence Viewer

Length: 732 bp
ATGACCAAGATCGATTCCCTCCGTCGATTCCTCCTCCCTTGCTTCTCCCCCTCCTCCCCGGCCGCCGCCACCACCACCAAGAAACGCCTCAGCACCTCCCTCCGCGACGACATCGTCGACGACCAAGAACCCGCCCAAGACTCCGACCCTTCCTCCCCCACCGCCTCCTCCACGTCAGCGCCCTCCTCCGCCCAGCCCCGGCCGTCGAAGTCGATGGTGATCGGCACCATCTTCGGGCACCGCCGCGGCCACGTCTGGTTCTGCGTCCAGCACGACCGCCTCTCGACCCGACCCGCGCTCCTCCTGGAGCTCTCCATCTTGACCCACCAGCTCGTCAAGGAAATGCGGTTCGGGTTGGTCCGGATCACCCTCGAGTGCGACGACCGCTCCTCCGATCTCTCCACGTGTCCTCTCCGGTCCGTCCCCGTCTGGGCGCTGCACTGCAACGGCCGCAAGCTTGGGTTCGCCGCCCGGAGGAAAGCCGGCGACAAAGTCCGCCTGATGCTGAAGGCCATGGAGTCAACAACCGTCGGAGCCGGGGCCTTGCCAGCCGGGTTCGGGTTCGGGTTCGGGTCCGGGTCGTCGGACTCGGAGGGCCCGGTTATGTACATGAGGTCGAATTACGAGCACGTGGTTGGGAGCGCCGACTCGGAGTCGTTTCATCTGATCAACCCGGATCAGTTCCCGGGTCAAGAACTCAGTGTCTTCTTGCTCAGGTCCAGAAACTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

243

Amino Acids

26.51

Weight (kDa)

9.09

Isoelectric Point (pI)

60.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 73 - 239 1e-57 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37880
fragaria_vesca FvH4_6g12850
malus_domestica MD04G1137600.v1.1 MD12G1152400.v1.1
prunus_persica Prupe.6G263600_v2.0.a1
pyrus_communis pycom04g12600
rosa_chinensis RchiOBHm_Chr3g0464851
rosa_laevigata RLG00000024669
rosa_multiflora Rmu_sc0007114.1_g000004
rosa_roxburghii Rroxscaffold_6G00415390
rosa_rugosa Rorug03G0074400
rosa_samantha Rh3BG137200 Rh3CG139800 Rh3DG138600
rosa_wichuraiana Rw3G011210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AccB1I GGYRCC 2 cut(s) 224, 237
AccBSI CCGCTC 1 cut(s) 387
AccI GTMKAC 1 cut(s) 117
AccII CGCG 3 cut(s) 105, 246, 296
AccIII TCCGGA 1 cut(s) 360
AclWI GGATC 2 cut(s) 371, 684
AcoI YGGCCR 4 cut(s) 60, 200, 247, 448
AcuI CTGAAG 1 cut(s) 527
AcvI CACGTG 2 cut(s) 405, 631
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 5 cut(s) 198, 234, 430, 474, 558
AflIII ACRYGT 1 cut(s) 404
AhdI GACNNNNNGTC 1 cut(s) 652
AjiI CACGTC 2 cut(s) 174, 253
AjnI CCWGG 1 cut(s) 303
AloI GAACNNNNNNTCC 2 cut(s) 332, 364
AluBI AGCT 3 cut(s) 310, 331, 457
AluI AGCT 3 cut(s) 310, 331, 457
Alw21I GWGCWC 2 cut(s) 312, 630
AlwI GGATC 2 cut(s) 371, 684
Ama87I CYCGRG 2 cut(s) 371, 685
Aor13HI TCCGGA 1 cut(s) 360
AoxI GGCC 7 cut(s) 60, 200, 247, 448, 510, 540, 595
ApaI GGGCCC 1 cut(s) 599
ApeKI GCWGC 1 cut(s) 436
AspLEI GCGC 4 cut(s) 181, 298, 436, 644
AspS9I GGNCC 7 cut(s) 358, 417, 540, 573, 595, 596, 717
AsuHPI GGTGA 2 cut(s) 229, 358
AvaI CYCGRG 2 cut(s) 371, 685
AvaII GGWCC 4 cut(s) 358, 417, 573, 717
BaeGI GKGCMC 2 cut(s) 240, 599
BanI GGYRCC 2 cut(s) 224, 237
BanII GRGCYC 2 cut(s) 312, 599
BbrPI CACGTG 2 cut(s) 405, 631
BbsI GAAGAC 1 cut(s) 697
Bbv12I GWGCWC 2 cut(s) 312, 630
BbvCI CCTCAGC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 423
BccI CCATC 3 cut(s) 208, 236, 323
BceAI ACGGC 2 cut(s) 187, 463
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 666
BfoI RGCGCY 3 cut(s) 182, 437, 645
BisI GCNGC 7 cut(s) 63, 66, 244, 247, 437, 451, 468
BlsI GCNGC 7 cut(s) 64, 67, 245, 248, 438, 452, 469
Bme18I GGWCC 4 cut(s) 358, 417, 573, 717
BmeRI GACNNNNNGTC 1 cut(s) 652
BmeT110I CYCGRG 2 cut(s) 371, 685
BmgBI CACGTC 2 cut(s) 174, 253
BmgT120I GGNCC 7 cut(s) 358, 417, 540, 573, 595, 596, 717
BmiI GGNNCC 6 cut(s) 226, 239, 535, 541, 574, 597
BmsI GCATC 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 697
BpmI CTGGAG 1 cut(s) 326
Bpu10I CCTNAGC 2 cut(s) 89, 713
Bsa29I ATCGAT 1 cut(s) 12
BsaAI YACGTR 2 cut(s) 405, 631
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 6 cut(s) 57, 197, 244, 513, 537, 685
BsaWI WCCGGW 2 cut(s) 360, 414
BsaXI ACNNNNNCTCC 8 cut(s) 137, 167, 282, 312, 371, 374, 401, 404
Bsc4I CCNNNNNNNGG 5 cut(s) 198, 234, 430, 474, 558
Bse118I RCCGGY 1 cut(s) 482
Bse8I GATNNNNATC 1 cut(s) 218
BseAI TCCGGA 1 cut(s) 360
BseBI CCWGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 6 cut(s) 57, 197, 244, 513, 537, 685
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 5 cut(s) 198, 234, 430, 474, 558
BseMII CTCAG 3 cut(s) 103, 712, 727
BseRI GAGGAG 6 cut(s) 23, 43, 157, 175, 290, 379
BseSI GKGCMC 2 cut(s) 240, 599
BseX3I CGGCCG 3 cut(s) 60, 200, 448
BseXI GCAGC 1 cut(s) 423
BseYI CCCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 3 cut(s) 105, 246, 296
Bsh1285I CGRYCG 5 cut(s) 63, 203, 277, 385, 451
BshFI GGCC 7 cut(s) 62, 202, 249, 450, 512, 542, 597
BshNI GGYRCC 2 cut(s) 224, 237
BshVI ATCGAT 1 cut(s) 12
BsiEI CGRYCG 5 cut(s) 63, 203, 277, 385, 451
BsiHKAI GWGCWC 2 cut(s) 312, 630
BsiHKCI CYCGRG 2 cut(s) 371, 685
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 5 cut(s) 198, 234, 430, 474, 558
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 7 cut(s) 62, 202, 249, 450, 512, 542, 597
BsoBI CYCGRG 2 cut(s) 371, 685
Bsp120I GGGCCC 1 cut(s) 595
Bsp1286I GDGCHC 4 cut(s) 240, 312, 599, 630
Bsp13I TCCGGA 1 cut(s) 360
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 6 cut(s) 9, 219, 363, 394, 666, 676
Bsp19I CCATGG 1 cut(s) 513
BspANI GGCC 7 cut(s) 62, 202, 249, 450, 512, 542, 597
BspCNI CTCAG 3 cut(s) 102, 711, 726
BspDI ATCGAT 1 cut(s) 12
BspEI TCCGGA 1 cut(s) 360
BspFNI CGCG 3 cut(s) 105, 246, 296
BspLI GGNNCC 6 cut(s) 226, 239, 535, 541, 574, 597
BspPI GGATC 2 cut(s) 371, 684
BspT107I GGYRCC 2 cut(s) 224, 237
BsrBI CCGCTC 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 606
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 6 cut(s) 57, 197, 244, 513, 537, 685
BssMI GATC 6 cut(s) 9, 219, 363, 394, 666, 676
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 529
BstAUI TGTACA 1 cut(s) 606
BstBAI YACGTR 2 cut(s) 405, 631
BstC8I GCNNGC 3 cut(s) 455, 484, 549
BstDEI CTNAG 3 cut(s) 89, 698, 713
BstDSI CCRYGG 2 cut(s) 244, 513
BstFNI CGCG 3 cut(s) 105, 246, 296
BstH2I RGCGCY 3 cut(s) 182, 437, 645
BstHHI GCGC 4 cut(s) 181, 298, 436, 644
BstKTI GATC 6 cut(s) 12, 222, 366, 397, 669, 679
BstMBI GATC 6 cut(s) 9, 219, 363, 394, 666, 676
BstMCI CGRYCG 5 cut(s) 63, 203, 277, 385, 451
BstMWI GCNNNNNNNGC 3 cut(s) 384, 450, 548
BstNI CCWGG 1 cut(s) 305
BstSLI GKGCMC 2 cut(s) 240, 599
BstUI CGCG 3 cut(s) 105, 246, 296
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 697
BstZI CGGCCG 3 cut(s) 60, 200, 448
Bsu15I ATCGAT 1 cut(s) 12
BsuRI GGCC 7 cut(s) 62, 202, 249, 450, 512, 542, 597
BsuTUI ATCGAT 1 cut(s) 12
BtgI CCRYGG 2 cut(s) 244, 513
BtrI CACGTC 2 cut(s) 174, 253
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 2 cut(s) 439, 706
Cac8I GCNNGC 3 cut(s) 455, 484, 549
CfoI GCGC 4 cut(s) 181, 298, 436, 644
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 7 cut(s) 358, 417, 540, 573, 595, 596, 717
Cfr42I CCGCGG 1 cut(s) 247
Cfr9I CCCGGG 1 cut(s) 685
ClaI ATCGAT 1 cut(s) 12
CpoI CGGWCCG 1 cut(s) 417
CseI GACGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 607
CspI CGGWCCG 1 cut(s) 417
CviAII CATG 2 cut(s) 514, 610
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 3 cut(s) 89, 698, 713
DpnI GATC 6 cut(s) 11, 221, 365, 396, 668, 678
DpnII GATC 6 cut(s) 9, 219, 363, 394, 666, 676
DrdI GACNNNNNNGTC 1 cut(s) 113
DriI GACNNNNNGTC 1 cut(s) 652
DseDI GACNNNNNNGTC 1 cut(s) 113
EaeI YGGCCR 4 cut(s) 60, 200, 247, 448
EagI CGGCCG 3 cut(s) 60, 200, 448
Eam1105I GACNNNNNGTC 1 cut(s) 652
EciI GGCGGA 2 cut(s) 178, 485
Ecl136II GAGCTC 1 cut(s) 310
EclXI CGGCCG 3 cut(s) 60, 200, 448
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 2 cut(s) 312, 599
Eco47I GGWCC 4 cut(s) 358, 417, 573, 717
Eco52I CGGCCG 3 cut(s) 60, 200, 448
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 527
Eco72I CACGTG 2 cut(s) 405, 631
Eco88I CYCGRG 2 cut(s) 371, 685
EcoICRI GAGCTC 1 cut(s) 310
EcoO109I RGGNCCY 2 cut(s) 540, 595
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 2 cut(s) 312, 599
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 2 cut(s) 517, 613
FaiI YATR 3 cut(s) 515, 605, 611
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 513, 609
FauI CCCGC 2 cut(s) 139, 301
FbaI TGATCA 1 cut(s) 666
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 7 cut(s) 63, 66, 244, 247, 437, 451, 468
FriOI GRGCYC 2 cut(s) 312, 599
Fsp4HI GCNGC 7 cut(s) 63, 66, 244, 247, 437, 451, 468
GlaI GCGC 4 cut(s) 180, 297, 435, 643
GluI GCNGC 7 cut(s) 63, 66, 244, 247, 437, 451, 468
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 3 cut(s) 182, 437, 645
HaeIII GGCC 7 cut(s) 62, 202, 249, 450, 512, 542, 597
HgaI GACGC 1 cut(s) 253
HhaI GCGC 4 cut(s) 181, 298, 436, 644
Hin1II CATG 2 cut(s) 517, 613
Hin6I GCGC 4 cut(s) 179, 296, 434, 642
HinP1I GCGC 4 cut(s) 179, 296, 434, 642
HincII GTYRAC 2 cut(s) 118, 522
HindII GTYRAC 2 cut(s) 118, 522
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 7 cut(s) 14, 27, 140, 518, 587, 647, 653
HphI GGTGA 2 cut(s) 229, 358
Hpy166II GTNNAC 2 cut(s) 118, 522
Hpy188I TCNGA 7 cut(s) 145, 394, 533, 586, 592, 652, 666
Hpy188III TCNNGA 5 cut(s) 283, 319, 361, 692, 720
Hpy8I GTNNAC 2 cut(s) 118, 522
Hpy99I CGWCG 8 cut(s) 27, 110, 119, 122, 208, 383, 533, 586
HpyAV CCTTC 2 cut(s) 159, 502
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 4 cut(s) 173, 252, 404, 630
HpyCH4V TGCA 2 cut(s) 439, 444
HpyF10VI GCNNNNNNNGC 3 cut(s) 384, 450, 548
HpyF3I CTNAG 3 cut(s) 89, 698, 713
HpySE526I ACGT 4 cut(s) 173, 252, 404, 630
Hsp92II CATG 2 cut(s) 517, 613
HspAI GCGC 4 cut(s) 179, 296, 434, 642
Kpn2I TCCGGA 1 cut(s) 360
KroI GCCGGC 1 cut(s) 482
KroNI GCCGGC 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 666
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 6 cut(s) 9, 219, 363, 394, 666, 676
LmnI GCTCC 5 cut(s) 303, 307, 392, 533, 639
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 1 cut(s) 492
MaeII ACGT 4 cut(s) 173, 252, 404, 630
MalI GATC 6 cut(s) 11, 221, 365, 396, 668, 678
MbiI CCGCTC 1 cut(s) 387
MboI GATC 6 cut(s) 9, 219, 363, 394, 666, 676
MboII GAAGA 2 cut(s) 223, 697
MhlI GDGCHC 4 cut(s) 240, 312, 599, 630
MluCI AATT 1 cut(s) 619
MlyI GAGTC 5 cut(s) 134, 527, 581, 641, 662
MmeI TCCRAC 3 cut(s) 168, 511, 564
MroI TCCGGA 1 cut(s) 360
MroNI GCCGGC 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 3 cut(s) 105, 246, 296
MwoI GCNNNNNNNGC 3 cut(s) 384, 450, 548
NaeI GCCGGC 1 cut(s) 484
NcoI CCATGG 1 cut(s) 513
NdeII GATC 6 cut(s) 9, 219, 363, 394, 666, 676
NgoMIV GCCGGC 1 cut(s) 482
NlaIII CATG 2 cut(s) 517, 613
NlaIV GGNNCC 6 cut(s) 226, 239, 535, 541, 574, 597
PaeR7I CTCGAG 1 cut(s) 371
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 378
PdiI GCCGGC 1 cut(s) 484
PfeI GAWTC 2 cut(s) 14, 27
PflFI GACNNNGTC 2 cut(s) 113, 491
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 7 cut(s) 64, 67, 245, 248, 438, 452, 469
PleI GAGTC 5 cut(s) 134, 526, 581, 641, 661
PmaCI CACGTG 2 cut(s) 405, 631
PmlI CACGTG 2 cut(s) 405, 631
PpsI GAGTC 5 cut(s) 134, 526, 581, 641, 661
Ppu21I YACGTR 2 cut(s) 405, 631
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 303
PspCI CACGTG 2 cut(s) 405, 631
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 6 cut(s) 226, 239, 535, 541, 574, 597
PspOMI GGGCCC 1 cut(s) 595
PspPI GGNCC 7 cut(s) 358, 417, 540, 573, 595, 596, 717
PspXI VCTCGAGB 1 cut(s) 371
PsyI GACNNNGTC 2 cut(s) 113, 491
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
Rsr2I CGGWCCG 1 cut(s) 417
RsrII CGGWCCG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 312
SacII CCGCGG 1 cut(s) 247
SalI GTCGAC 1 cut(s) 116
SatI GCNGC 7 cut(s) 63, 66, 244, 247, 437, 451, 468
Sau3AI GATC 6 cut(s) 9, 219, 363, 394, 666, 676
Sau96I GGNCC 7 cut(s) 358, 417, 540, 573, 595, 596, 717
SchI GAGTC 5 cut(s) 134, 527, 581, 641, 662
SduI GDGCHC 4 cut(s) 240, 312, 599, 630
SfaNI GCATC 1 cut(s) 492
Sfr274I CTCGAG 1 cut(s) 371
Sfr303I CCGCGG 1 cut(s) 247
SgrBI CCGCGG 1 cut(s) 247
SgrDI CGTCGACG 1 cut(s) 116
SinI GGWCC 4 cut(s) 358, 417, 573, 717
SlaI CTCGAG 1 cut(s) 371
SmaI CCCGGG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 1 cut(s) 619
SstI GAGCTC 1 cut(s) 312
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 4 cut(s) 176, 255, 407, 633
TaqI TCGA 8 cut(s) 12, 25, 117, 206, 212, 284, 372, 617
TasI AATT 1 cut(s) 619
TatI WGTACW 1 cut(s) 606
TauI GCSGC 6 cut(s) 65, 68, 246, 249, 453, 470
TfiI GAWTC 2 cut(s) 14, 27
TscAI CASTG 2 cut(s) 446, 706
TseI GCWGC 1 cut(s) 436
TspDTI ATGAA 1 cut(s) 650
TspGWI ACGGA 2 cut(s) 11, 409
TspMI CCCGGG 1 cut(s) 685
TspRI CASTG 2 cut(s) 446, 706
Tth111I GACNNNGTC 2 cut(s) 113, 491
VpaK11BI GGWCC 4 cut(s) 358, 417, 573, 717
XhoI CTCGAG 1 cut(s) 371
XmaI CCCGGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.