Rorug03G0074400

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003229
Physical Location & Seq
Reverse (-)
5854927 .. 5856011
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0074400.1

Sequence Viewer

Length: 513 bp
ATGACTTTCTTTAATCTCCCTCCAAAACACAAGTTCCTTGGTTTCACTCTTGTTCTCATTGTTGTATTTTGCTGCTTCTCAGGCTATTCAGCAGACAACCCGGGGGAAAGATTTTTCAATGCCTTAAGGTGCTTCAGCAATAAGTTTATCTATTCCTCTGGTTGTGATAAAGCATATAGATTGAACGAAAGCGGAAACCTTAATGTGCCTCCTGATGCACTTGATCTGTTCTGCCATGGACCCTGTCTGGCTGAGACACAGCAAGTGCTGAAGTGCGTTGATAGCATGTTATCGACCTTCATTTTCAATAATAAGGCTACACTACCAGATATAAGAGGTGCCCTCCATGACGGCTGCAGCTATACCAGCCAAAGAGGGAACTTCAATGGTTTTGGACCTTTCGGTGAGTATATACAAGGCGAAAATGCTGCAGGGAAGCTACCAAATTTAGTCACCTTCCTCTTCACAATCTTATGTATTACAGGCTGTTGTCTCTTCTTCATCTTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

170

Amino Acids

18.91

Weight (kDa)

6.78

Isoelectric Point (pI)

23.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7731 PF24865 37 - 129 7.4e-37 Domain of unknown function (DUF7731)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AciI CCGC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 2 cut(s) 118, 290
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 4 cut(s) 118, 184, 307, 385
AluBI AGCT 2 cut(s) 360, 439
AluI AGCT 2 cut(s) 360, 439
Alw26I GTCTC 2 cut(s) 248, 497
Ama87I CYCGRG 1 cut(s) 100
ApeKI GCWGC 4 cut(s) 72, 354, 357, 428
ApoI RAATTY 1 cut(s) 445
AspS9I GGNCC 2 cut(s) 239, 395
AsuC2I CCSGG 2 cut(s) 101, 102
AsuHPI GGTGA 2 cut(s) 416, 445
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 2 cut(s) 239, 395
BaeGI GKGCMC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 4 cut(s) 59, 341, 369, 415
BceAI ACGGC 1 cut(s) 367
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BcnI CCSGG 2 cut(s) 101, 102
BcoDI GTCTC 2 cut(s) 248, 497
BfmI CTRYAG 2 cut(s) 355, 429
BfrI CTTAAG 1 cut(s) 124
BisI GCNGC 4 cut(s) 73, 355, 358, 429
BlsI GCNGC 4 cut(s) 74, 356, 359, 430
Bme1390I CCNGG 2 cut(s) 101, 102
Bme18I GGWCC 2 cut(s) 239, 395
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 239, 395
BmiI GGNNCC 2 cut(s) 241, 340
BmrFI CCNGG 2 cut(s) 101, 102
BmsI GCATC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 327, 359
BpuMI CCSGG 2 cut(s) 101, 102
BsaJI CCNNGG 4 cut(s) 37, 100, 101, 235
BseDI CCNNGG 4 cut(s) 37, 100, 101, 235
BseMII CTCAG 2 cut(s) 93, 243
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 4 cut(s) 59, 341, 369, 415
BshNI GGYRCC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 101
BsmAI GTCTC 2 cut(s) 248, 497
BsoBI CYCGRG 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 223
Bsp19I CCATGG 1 cut(s) 235
BspACI CCGC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 92, 244
BspLI GGNNCC 2 cut(s) 241, 340
BspMAI CTGCAG 2 cut(s) 359, 433
BspT107I GGYRCC 1 cut(s) 338
BspTI CTTAAG 1 cut(s) 124
BssECI CCNNGG 4 cut(s) 37, 100, 101, 235
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 2 cut(s) 37, 235
Bst6I CTCTTC 2 cut(s) 467, 500
BstAFI CTTAAG 1 cut(s) 124
BstDEI CTNAG 2 cut(s) 79, 252
BstDSI CCRYGG 1 cut(s) 235
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 248, 497
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 3 cut(s) 81, 282, 366
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 2 cut(s) 99, 100
BstSFI CTRYAG 2 cut(s) 355, 429
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 4 cut(s) 59, 341, 369, 415
BtgI CCRYGG 1 cut(s) 235
Cfr13I GGNCC 2 cut(s) 239, 395
Cfr9I CCCGGG 1 cut(s) 100
CviAII CATG 3 cut(s) 236, 286, 347
CviJI RGCY 8 cut(s) 84, 251, 317, 354, 360, 369, 439, 486
CviKI_1 RGCY 8 cut(s) 84, 251, 317, 354, 360, 369, 439, 486
DdeI CTNAG 2 cut(s) 79, 252
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 467, 500
EarI CTCTTC 2 cut(s) 467, 500
Eco130I CCWWGG 2 cut(s) 37, 235
Eco47I GGWCC 2 cut(s) 239, 395
Eco57I CTGAAG 2 cut(s) 118, 290
Eco88I CYCGRG 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 37, 235
ErhI CCWWGG 2 cut(s) 37, 235
FaeI CATG 3 cut(s) 239, 289, 350
FatI CATG 3 cut(s) 235, 285, 346
Fnu4HI GCNGC 4 cut(s) 73, 355, 358, 429
Fsp4HI GCNGC 4 cut(s) 73, 355, 358, 429
GluI GCNGC 4 cut(s) 73, 355, 358, 429
HapII CCGG 1 cut(s) 101
Hin1II CATG 3 cut(s) 239, 289, 350
HpaII CCGG 1 cut(s) 101
HphI GGTGA 2 cut(s) 416, 445
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 307, 466
HpyCH4V TGCA 3 cut(s) 218, 357, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 282, 366
HpyF3I CTNAG 2 cut(s) 79, 252
Hsp92II CATG 3 cut(s) 239, 289, 350
Kzo9I GATC 1 cut(s) 223
Lsp1109I GCAGC 4 cut(s) 59, 341, 369, 415
LweI GCATC 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 451
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 3 cut(s) 454, 487, 490
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 1 cut(s) 445
MnlI CCTC 7 cut(s) 30, 166, 219, 329, 353, 368, 470
MseI TTAA 3 cut(s) 12, 125, 201
MspCI CTTAAG 1 cut(s) 124
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 101, 102
MwoI GCNNNNNNNGC 3 cut(s) 81, 282, 366
NciI CCSGG 2 cut(s) 101, 102
NcoI CCATGG 1 cut(s) 235
NdeII GATC 1 cut(s) 223
NlaIII CATG 3 cut(s) 239, 289, 350
NlaIV GGNNCC 2 cut(s) 241, 340
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 1 cut(s) 289
PflFI GACNNNGTC 1 cut(s) 243
PkrI GCNGC 4 cut(s) 74, 356, 359, 430
PspN4I GGNNCC 2 cut(s) 241, 340
PspPI GGNCC 2 cut(s) 239, 395
PstI CTGCAG 2 cut(s) 359, 433
PsyI GACNNNGTC 1 cut(s) 243
SaqAI TTAA 3 cut(s) 12, 125, 201
SatI GCNGC 4 cut(s) 73, 355, 358, 429
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 239, 395
ScrFI CCNGG 2 cut(s) 101, 102
SduI GDGCHC 1 cut(s) 343
SetI ASST 8 cut(s) 131, 201, 299, 340, 362, 400, 441, 458
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 2 cut(s) 355, 429
SinI GGWCC 2 cut(s) 239, 395
SmaI CCCGGG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 1 cut(s) 445
SsiI CCGC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 99, 100
StyI CCWWGG 2 cut(s) 37, 235
TaqI TCGA 1 cut(s) 293
TasI AATT 1 cut(s) 445
Tru1I TTAA 3 cut(s) 12, 125, 201
Tru9I TTAA 3 cut(s) 12, 125, 201
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 4 cut(s) 72, 354, 357, 428
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 2 cut(s) 289, 490
TspMI CCCGGG 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 243
Vha464I CTTAAG 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 239, 395
XapI RAATTY 1 cut(s) 445
XceI RCATGY 1 cut(s) 289
XmaI CCCGGG 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.