Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8023650.1

Orthogroup ID

OG0003229

Physical Location & Seq

Genomic Coordinates Forward (+)

22 .. 541

Gene Structure 520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8023650.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 520 bp

atggtgtccttgacattaactgcaagtttacatgagctaactcctcctgcctgcaatggacaagcgcaatgcgaacaacccaatgcgtggcagaagtttgtcctcttttcgggtctgggactgctcgttattggatctggaggcctcagaccatgcaacattgcctttggagctgatcaattcgacaccacaacagagaagggaagagcacagctagatagcttttgcaattggtggtactttttgttcaccattgctctcattgtagctctgaccggagtggtctacatacaaactcatatcagctgggttttgggttttgctataccagctggatgctttgccctctccatactgattttcttgctcggccgaaaattgtacattcgtgttaagcctcaaggaagcacctttggggacataatgagggtaattgtagctgcttttcgtaagtttagaacaaagacttcagggcagtccctttatgatgctccttcaattggacaagagttggagcaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04974 map04974

Pfam Domains

Protein Families

PTR2

Protein Analysis

173

Amino Acids

19.0

Weight (kDa)

8.66

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28470 AT5G28470
fragaria_vesca	FvH4_5g15610 FvH4_5g15610 FvH4_5g15610 FvH4_5g15660 FvH4_5g15660 FvH4_5g15660 FvH4_6g12851
malus_domestica	MD04G1137500.v1.1 MD06G1186800.v1.1 MD12G1152300.v1.1 MD14G1193200.v1.1
prunus_persica	Prupe.5G185300_v2.0.a1 Prupe.6G263500_v2.0.a1 Prupe.6G263500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0464881 RchiOBHm_Chr7g0180471
rosa_laevigata	RLG00000005264 RLG00000024668
rosa_multiflora	Rmu_co8023650.1_g000001 Rmu_co8294651.1_g000001 Rmu_sc0003322.1_g000004 Rmu_sc0005690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272850 Rroxscaffold_6G00415380
rosa_rugosa	Rorug03G0074400 Rorug06G0433000
rosa_samantha	Rh3BG137300 Rh3CG139900 Rh3DG138700 Rh7AG034000 Rh7BG034000 Rh7CG035800 Rh7DG034400
rosa_wichuraiana	Rw3G011220 Rw7G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	285
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	2 cut(s)	239, 383
AfiI	CCNNNNNNNGG	3 cut(s)	87, 109, 500
AgsI	TTSAA	1 cut(s)	498
AluBI	AGCT	8 cut(s)	37, 173, 214, 222, 269, 306, 332, 440
AluI	AGCT	8 cut(s)	37, 173, 214, 222, 269, 306, 332, 440
Alw21I	GWGCWC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	2 cut(s)	142, 370
ApeKI	GCWGC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	427
BclI	TGATCA	1 cut(s)	175
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
BmsI	GCATC	2 cut(s)	326, 478
BpmI	CTGGAG	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 109, 500
Bse3DI	GCAATG	4 cut(s)	61, 74, 159, 252
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	87, 109, 500
BseMI	GCAATG	4 cut(s)	61, 74, 159, 252
BseMII	CTCAG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	33
BseX3I	CGGCCG	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	2 cut(s)	144, 372
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	3 cut(s)	132, 431, 463
BslI	CCNNNNNNNGG	3 cut(s)	87, 109, 500
BsmFI	GGGAC	3 cut(s)	132, 431, 463
BsnI	GGCC	2 cut(s)	144, 372
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	134, 175
BspANI	GGCC	2 cut(s)	144, 372
BspCNI	CTCAG	1 cut(s)	159
BspPI	GGATC	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	199
BsrDI	GCAATG	4 cut(s)	61, 74, 159, 252
BsrGI	TGTACA	1 cut(s)	381
BssMI	GATC	2 cut(s)	134, 175
Bst6I	CTCTTC	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	137, 178
BstMBI	GATC	2 cut(s)	134, 175
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 329
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BstZI	CGGCCG	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	144, 372
BtsCI	GGATG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	238, 382
CviAII	CATG	2 cut(s)	32, 153
CviQI	GTAC	2 cut(s)	238, 382
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	2 cut(s)	136, 177
DpnII	GATC	2 cut(s)	134, 175
EaeI	YGGCCR	1 cut(s)	370
EagI	CGGCCG	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	144
Eco52I	CGGCCG	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	453
FaeI	CATG	2 cut(s)	35, 156
FaiI	YATR	8 cut(s)	33, 154, 290, 300, 326, 353, 422, 486
FaqI	GGGAC	3 cut(s)	132, 431, 463
FatI	CATG	2 cut(s)	31, 152
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	441
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	144, 372
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	35, 156
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	3 cut(s)	29, 249, 286
Hpy188I	TCNGA	2 cut(s)	149, 273
Hpy188III	TCNNGA	1 cut(s)	138
Hpy8I	GTNNAC	3 cut(s)	29, 249, 286
HpyAV	CCTTC	2 cut(s)	193, 504
HpyCH4V	TGCA	4 cut(s)	23, 54, 156, 228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 329
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	35, 156
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	134, 175
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	3 cut(s)	170, 496, 514
LpnPI	CCDG	9 cut(s)	60, 64, 101, 123, 289, 292, 318, 342, 456
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	2 cut(s)	326, 478
MaeI	CTAG	1 cut(s)	215
MalI	GATC	2 cut(s)	136, 177
MboI	GATC	2 cut(s)	134, 175
MboII	GAAGA	1 cut(s)	216
MfeI	CAATTG	2 cut(s)	229, 498
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	5 cut(s)	179, 229, 377, 432, 498
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	7 cut(s)	54, 113, 134, 155, 356, 408, 420
MseI	TTAA	2 cut(s)	17, 393
MspA1I	CMGCKG	2 cut(s)	306, 332
MspI	CCGG	1 cut(s)	276
MunI	CAATTG	2 cut(s)	229, 498
MwoI	GCNNNNNNNGC	2 cut(s)	170, 329
NdeII	GATC	2 cut(s)	134, 175
NlaIII	CATG	2 cut(s)	35, 156
NmeAIII	GCCGAG	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	199
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	306
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	2 cut(s)	306, 332
RsaI	GTAC	2 cut(s)	239, 383
RsaNI	GTAC	2 cut(s)	238, 382
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	17, 393
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	2 cut(s)	134, 175
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	9 cut(s)	39, 175, 216, 224, 271, 308, 334, 413, 442
SfaNI	GCATC	2 cut(s)	326, 478
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	5 cut(s)	179, 229, 377, 432, 498
SseBI	AGGCCT	1 cut(s)	144
SspMI	CTAG	1 cut(s)	215
StuI	AGGCCT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	183
TasI	AATT	5 cut(s)	179, 229, 377, 432, 498
TatI	WGTACW	1 cut(s)	381
Tru1I	TTAA	2 cut(s)	17, 393
Tru9I	TTAA	2 cut(s)	17, 393
TseI	GCWGC	1 cut(s)	440
Van91I	CCANNNNNTGG	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.