Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001711

Physical Location & Seq

Genomic Coordinates Forward (+)

56776932 .. 56780000

Gene Structure 3069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0433000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGAAGGGTTAACGGAATCGCTTTGCTCGGCCGCACCGCCGCTGGTATTGGCGGCGCCACCAGAGTCAGCGGCGCAACTCCACAGCGACTGGTTCAAGCAGCGACGATAGGCTCGTGCTCGAATTCGAATCCGCTGTGGTTCAGTCGTCAAAGCTCCGGCGATCGCTTTGGCCTATCGAAACCCTCAGTGGCTGCCGGAGGCGCCAAGTGCTTCTCTACTTCCGTGGCTCAGGAGGTGCACTCCCACGTCTCCGCCGATAAGTTCGCTCCGAACGACGTCGTTCTGTACCAGTACGAAGCCTGCCCTTTCTGCAACAAGGTTAGAGCATTTTTGGACTATAATAACATTCCGTACAAAGTTATGGAGGTTAATCCCATGAGCAAAAAGGAGATCAAATGGTCTGATTACAAGAAGGTGCCGATATTGAAAGTTGACGATGAACAGATGGTGGATTCTTCAGATATAATTGATAAGCTATTCCAAAGAATCAATCCTGAGAACAGTGTTGTCGATAGTGAGGAAGAAAACAAGTGGCGCCAGTGGGTGGATGATCACTTGGTGCATGTTTTATCACCAAACATATATCGAACTCCTTCAGAAGCTCTTGAGTCATTTGATTATATAACCAGTCACGGGAATTTCAGTTTATCCGAAAGGCTAGTAGCCAAGTATGGTGGAGCTGCAGCAATGTATTTTGTATCAAAAAAATTGAAGAAGAGACACAATATCACCGATGCTCGTGCAGATTTATATGGAGCTGCAGAGACTTGGGTGGATGCTCTGAAAGGCCGGCAGTTTCTTGGTGGGTCAACTCCTAACTTGGCTGATCTTGCTGTATTTGGTGTTTTGAGGCCGATTCGGCACCTTAAATCTGGCAAAGAAATGGTGGAGAACACCCGAATCGGTGAATGGTATAGTCGAATGGAGAGTGCAGTGGGAGAGTCTGCTAGATTCAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009506 GO:0009628 GO:0010232 GO:0010233 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015103 GO:0015112 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015698 GO:0015706 GO:0015711 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0032501 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072348 GO:0080167 GO:0090408 GO:0090448 GO:0090449 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1901264 GO:1901349 GO:1901505 GO:1901682 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

321

Amino Acids

35.65

Weight (kDa)

8.88

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	94 - 148	1.8e-09	Glutaredoxin
GST_N_3	PF13417	96 - 165	9.2e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	101 - 160	1.6e-08	Glutathione S-transferase, N-terminal domain
GST_N_4	PF17172	103 - 190	6.6e-08	Glutathione S-transferase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18880 AT3G47960 AT5G62680
fragaria_vesca	FvH4_5g15612 FvH4_5g15612 FvH4_5g15612 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15670 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671
malus_domestica	MD06G1186500.v1.1 MD06G1186600.v1.1 MD06G1186700.v1.1 MD14G1192700.v1.1 MD14G1192800.v1.1 MD14G1193100.v1.1
prunus_persica	Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185200_v2.0.a1
pyrus_communis	pycom06g16580 pycom14g16040
rosa_chinensis	RchiOBHm_Chr7g0180421 RchiOBHm_Chr7g0180441
rosa_laevigata	RLG00000005265 RLG00000005267
rosa_multiflora	Rmu_sc0003322.1_g000002 Rmu_sc0003526.1_g000001 Rmu_sc0003526.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272870 Rroxscaffold_3G00272900
rosa_rugosa	Rorug06G0433000
rosa_samantha	Rh7AG033600 Rh7AG033700 Rh7BG033600 Rh7BG033700 Rh7CG035500 Rh7CG035600 Rh7DG034000 Rh7DG034200
rosa_wichuraiana	Rw7G002810 Rw7G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
AccB1I	GGYRCC	5 cut(s)	56, 203, 418, 537, 864
AccB7I	CCANNNNNTGG	1 cut(s)	547
AciI	CCGC	7 cut(s)	34, 39, 42, 54, 72, 134, 255
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	2 cut(s)	124, 640
AcuI	CTGAAG	2 cut(s)	444, 582
AcyI	GRCGYC	4 cut(s)	57, 204, 279, 538
AdeI	CACNNNGTG	1 cut(s)	562
AfaI	GTAC	3 cut(s)	290, 296, 356
AfiI	CCNNNNNNNGG	2 cut(s)	547, 636
AgsI	TTSAA	4 cut(s)	98, 430, 715, 958
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	5 cut(s)	156, 478, 605, 683, 761
AluI	AGCT	5 cut(s)	156, 478, 605, 683, 761
Alw21I	GWGCWC	2 cut(s)	122, 243
Alw26I	GTCTC	3 cut(s)	256, 715, 761
Alw44I	GTGCAC	1 cut(s)	239
AlwNI	CAGNNNCTG	2 cut(s)	91, 194
AoxI	GGCC	4 cut(s)	31, 172, 790, 854
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	5 cut(s)	101, 194, 683, 686, 761
ApoI	RAATTY	2 cut(s)	124, 640
AsiSI	GCGATCGC	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	595
AspLEI	GCGC	4 cut(s)	59, 77, 206, 540
AsuHPI	GGTGA	3 cut(s)	567, 724, 920
AsuII	TTCGAA	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	243
BanI	GGYRCC	5 cut(s)	56, 203, 418, 537, 864
BauI	CACGAG	2 cut(s)	115, 741
Bbv12I	GWGCWC	2 cut(s)	122, 243
BbvI	GCAGC	5 cut(s)	113, 181, 670, 698, 748
BccI	CCATC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	725, 759
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	256, 715, 761
BfaI	CTAG	2 cut(s)	662, 951
BfmI	CTRYAG	2 cut(s)	684, 762
BfoI	RGCGCY	3 cut(s)	60, 207, 541
BglI	GCCNNNNNGGC	1 cut(s)	862
BisI	GCNGC	9 cut(s)	34, 42, 55, 73, 102, 195, 684, 687, 762
BlsI	GCNGC	9 cut(s)	35, 43, 56, 74, 103, 196, 685, 688, 763
BmgBI	CACGTC	1 cut(s)	250
BmiI	GGNNCC	5 cut(s)	58, 205, 420, 539, 866
BmsI	GCATC	2 cut(s)	727, 769
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	629
BsaHI	GRCGYC	4 cut(s)	57, 204, 279, 538
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 636
Bse118I	RCCGGY	1 cut(s)	792
Bse1I	ACTGG	4 cut(s)	96, 292, 541, 630
Bse3DI	GCAATG	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	556, 784
BseLI	CCNNNNNNNGG	2 cut(s)	547, 636
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	3 cut(s)	201, 245, 489
BseNI	ACTGG	4 cut(s)	96, 292, 541, 630
BseSI	GKGCMC	1 cut(s)	243
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	5 cut(s)	113, 181, 670, 698, 748
BsgI	GTGCAG	2 cut(s)	765, 954
Bsh1285I	CGRYCG	2 cut(s)	34, 166
BshFI	GGCC	4 cut(s)	33, 174, 792, 856
BshNI	GGYRCC	5 cut(s)	56, 203, 418, 537, 864
BsiEI	CGRYCG	2 cut(s)	34, 166
BsiHKAI	GWGCWC	2 cut(s)	122, 243
BsiSI	CCGG	3 cut(s)	159, 198, 793
BslI	CCNNNNNNNGG	2 cut(s)	547, 636
BsmAI	GTCTC	3 cut(s)	256, 715, 761
BsmBI	CGTCTC	1 cut(s)	256
BsnI	GGCC	4 cut(s)	33, 174, 792, 856
Bsp119I	TTCGAA	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	122, 243
Bsp143I	GATC	4 cut(s)	163, 393, 553, 829
BspACI	CCGC	7 cut(s)	34, 39, 42, 54, 72, 134, 255
BspANI	GGCC	4 cut(s)	33, 174, 792, 856
BspCNI	CTCAG	3 cut(s)	200, 244, 490
BspLI	GGNNCC	5 cut(s)	58, 205, 420, 539, 866
BspMAI	CTGCAG	2 cut(s)	688, 766
BspT104I	TTCGAA	1 cut(s)	128
BspT107I	GGYRCC	5 cut(s)	56, 203, 418, 537, 864
BsrDI	GCAATG	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	792
BsrI	ACTGG	4 cut(s)	96, 292, 541, 630
BssAI	RCCGGY	1 cut(s)	792
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	4 cut(s)	163, 393, 553, 829
BssNI	GRCGYC	4 cut(s)	57, 204, 279, 538
BssSI	CACGAG	2 cut(s)	115, 741
Bst2BI	CACGAG	2 cut(s)	115, 741
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	713
BstACI	GRCGYC	4 cut(s)	57, 204, 279, 538
BstBI	TTCGAA	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	304, 794
BstDEI	CTNAG	3 cut(s)	187, 231, 498
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	556, 784
BstH2I	RGCGCY	3 cut(s)	60, 207, 541
BstHHI	GCGC	4 cut(s)	59, 77, 206, 540
BstKTI	GATC	4 cut(s)	166, 396, 556, 832
BstMAI	GTCTC	3 cut(s)	256, 715, 761
BstMBI	GATC	4 cut(s)	163, 393, 553, 829
BstMCI	CGRYCG	2 cut(s)	34, 166
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 210, 312, 833, 862
BstNSI	RCATGY	1 cut(s)	569
BstSFI	CTRYAG	2 cut(s)	684, 762
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	5 cut(s)	113, 181, 670, 698, 748
BstZI	CGGCCG	1 cut(s)	31
BsuRI	GGCC	4 cut(s)	33, 174, 792, 856
BtgI	CCRYGG	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	556, 784
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	4 cut(s)	195, 511, 548, 942
Cac8I	GCNNGC	2 cut(s)	304, 794
CaiI	CAGNNNCTG	2 cut(s)	91, 194
CfoI	GCGC	4 cut(s)	59, 77, 206, 540
Cfr10I	RCCGGY	1 cut(s)	792
Csp6I	GTAC	3 cut(s)	289, 295, 355
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	2 cut(s)	379, 566
CviQI	GTAC	3 cut(s)	289, 295, 355
DdeI	CTNAG	3 cut(s)	187, 231, 498
DinI	GGCGCC	3 cut(s)	58, 205, 539
DpnI	GATC	4 cut(s)	165, 395, 555, 831
DpnII	GATC	4 cut(s)	163, 393, 553, 829
DraIII	CACNNNGTG	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
EciI	GGCGGA	1 cut(s)	244
EclXI	CGGCCG	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	444, 582
EcoRI	GAATTC	1 cut(s)	124
EgeI	GGCGCC	3 cut(s)	58, 205, 539
EheI	GGCGCC	3 cut(s)	58, 205, 539
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	2 cut(s)	382, 569
FatI	CATG	2 cut(s)	378, 565
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	9 cut(s)	34, 42, 55, 73, 102, 195, 684, 687, 762
FokI	GGATG	2 cut(s)	563, 791
Fsp4HI	GCNGC	9 cut(s)	34, 42, 55, 73, 102, 195, 684, 687, 762
FspBI	CTAG	2 cut(s)	662, 951
GlaI	GCGC	4 cut(s)	58, 76, 205, 539
GluI	GCNGC	9 cut(s)	34, 42, 55, 73, 102, 195, 684, 687, 762
HaeII	RGCGCY	3 cut(s)	60, 207, 541
HaeIII	GGCC	4 cut(s)	33, 174, 792, 856
HapII	CCGG	3 cut(s)	159, 198, 793
HhaI	GCGC	4 cut(s)	59, 77, 206, 540
Hin1I	GRCGYC	4 cut(s)	57, 204, 279, 538
Hin1II	CATG	2 cut(s)	382, 569
Hin6I	GCGC	4 cut(s)	57, 75, 204, 538
HinP1I	GCGC	4 cut(s)	57, 75, 204, 538
HincII	GTYRAC	3 cut(s)	13, 436, 813
HindII	GTYRAC	3 cut(s)	13, 436, 813
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	3 cut(s)	159, 198, 793
HphI	GGTGA	3 cut(s)	567, 724, 920
Hpy166II	GTNNAC	4 cut(s)	13, 241, 436, 813
Hpy188I	TCNGA	6 cut(s)	273, 406, 463, 601, 655, 786
Hpy188III	TCNNGA	3 cut(s)	233, 497, 608
Hpy8I	GTNNAC	4 cut(s)	13, 241, 436, 813
Hpy99I	CGWCG	3 cut(s)	109, 281, 284
HpyAV	CCTTC	2 cut(s)	409, 606
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	2 cut(s)	249, 279
HpyCH4V	TGCA	7 cut(s)	241, 315, 565, 686, 746, 764, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 210, 312, 833, 862
HpyF3I	CTNAG	3 cut(s)	187, 231, 498
HpySE526I	ACGT	2 cut(s)	249, 279
Hsp92I	GRCGYC	4 cut(s)	57, 204, 279, 538
Hsp92II	CATG	2 cut(s)	382, 569
HspAI	GCGC	4 cut(s)	57, 75, 204, 538
KasI	GGCGCC	3 cut(s)	56, 203, 537
KroI	GCCGGC	1 cut(s)	792
KroNI	GCCGGC	1 cut(s)	794
Ksp22I	TGATCA	1 cut(s)	553
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	163, 393, 553, 829
LmnI	GCTCC	4 cut(s)	161, 274, 680, 758
Lsp1109I	GCAGC	5 cut(s)	113, 181, 670, 698, 748
LweI	GCATC	2 cut(s)	727, 769
MaeI	CTAG	2 cut(s)	662, 951
MaeII	ACGT	2 cut(s)	249, 279
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	4 cut(s)	165, 395, 555, 831
MboI	GATC	4 cut(s)	163, 393, 553, 829
MboII	GAAGA	4 cut(s)	450, 536, 727, 730
MhlI	GDGCHC	2 cut(s)	122, 243
MluCI	AATT	4 cut(s)	124, 468, 640, 710
Mly113I	GGCGCC	3 cut(s)	57, 204, 538
MlyI	GAGTC	3 cut(s)	75, 620, 953
MnlI	CCTC	6 cut(s)	194, 196, 229, 361, 514, 846
MroNI	GCCGGC	1 cut(s)	792
MroXI	GAANNNNTTC	1 cut(s)	595
MseI	TTAA	3 cut(s)	12, 372, 870
MspA1I	CMGCKG	3 cut(s)	44, 72, 136
MspI	CCGG	3 cut(s)	159, 198, 793
MwoI	GCNNNNNNNGC	5 cut(s)	203, 210, 312, 833, 862
NaeI	GCCGGC	1 cut(s)	794
NarI	GGCGCC	3 cut(s)	57, 204, 538
NdeII	GATC	4 cut(s)	163, 393, 553, 829
NgoMIV	GCCGGC	1 cut(s)	792
NlaIII	CATG	2 cut(s)	382, 569
NlaIV	GGNNCC	5 cut(s)	58, 205, 420, 539, 866
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	632
NspI	RCATGY	1 cut(s)	569
NspV	TTCGAA	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	3 cut(s)	113, 255, 273
PdiI	GCCGGC	1 cut(s)	794
PdmI	GAANNNNTTC	1 cut(s)	595
PfeI	GAWTC	7 cut(s)	18, 130, 455, 489, 859, 903, 954
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	9 cut(s)	35, 43, 56, 74, 103, 196, 685, 688, 763
Ple19I	CGATCG	1 cut(s)	166
PleI	GAGTC	3 cut(s)	74, 619, 952
PluTI	GGCGCC	3 cut(s)	60, 207, 541
PpsI	GAGTC	3 cut(s)	74, 619, 952
PspN4I	GGNNCC	5 cut(s)	58, 205, 420, 539, 866
PstI	CTGCAG	2 cut(s)	688, 766
PstNI	CAGNNNCTG	2 cut(s)	91, 194
PvuI	CGATCG	1 cut(s)	166
RgaI	GCGATCGC	1 cut(s)	166
RsaI	GTAC	3 cut(s)	290, 296, 356
RsaNI	GTAC	3 cut(s)	289, 295, 355
SaqAI	TTAA	3 cut(s)	12, 372, 870
SatI	GCNGC	9 cut(s)	34, 42, 55, 73, 102, 195, 684, 687, 762
Sau3AI	GATC	4 cut(s)	163, 393, 553, 829
SchI	GAGTC	3 cut(s)	75, 620, 953
SduI	GDGCHC	2 cut(s)	122, 243
SfaAI	GCGATCGC	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	727, 769
SfcI	CTRYAG	2 cut(s)	684, 762
SfoI	GGCGCC	3 cut(s)	58, 205, 539
SfuI	TTCGAA	1 cut(s)	128
SgfI	GCGATCGC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	4 cut(s)	124, 468, 640, 710
SsiI	CCGC	7 cut(s)	34, 39, 42, 54, 72, 134, 255
SspDI	GGCGCC	3 cut(s)	56, 203, 537
SspMI	CTAG	2 cut(s)	662, 951
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	2 cut(s)	252, 282
TaqI	TCGA	6 cut(s)	122, 128, 179, 513, 589, 922
TasI	AATT	4 cut(s)	124, 468, 640, 710
TauI	GCSGC	4 cut(s)	36, 44, 57, 75
TfiI	GAWTC	7 cut(s)	18, 130, 455, 489, 859, 903, 954
Tru1I	TTAA	3 cut(s)	12, 372, 870
Tru9I	TTAA	3 cut(s)	12, 372, 870
TscAI	CASTG	4 cut(s)	195, 511, 548, 942
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	5 cut(s)	101, 194, 683, 686, 761
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	3 cut(s)	30, 214, 342
TspRI	CASTG	4 cut(s)	195, 511, 548, 942
Van91I	CCANNNNNTGG	1 cut(s)	547
VneI	GTGCAC	1 cut(s)	239
XapI	RAATTY	2 cut(s)	124, 640
XceI	RCATGY	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	595
XspI	CTAG	2 cut(s)	662, 951
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.