Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001711

Physical Location & Seq

Genomic Coordinates Reverse (-)

32429279 .. 32430746

Gene Structure 1468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1186600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAAGCAATCATGGAGAAGAAAGAGAAAGAGAGCATGGAGAAAAATGGGAGAGCGAGCATGGAGAAGAAAGAGAGAGAGAGCATGGAGAACAATGAGAGAGAGAGCATGGAGAAGAATGAGAGAGAGAGCATGGAGAAAAATGAGAGAGCGAGCATGGAGAAGAATGAGAGAGAGAGCATGGAGAAGAATGAGAGAGGTTCTACGGATGAAGAACCAGTTATATACAGAGGATGGAAAGTAATGCCATTTGTCATAGGAAATGAAACGTTTGAGAAGCTGGGAACCACTGGGACCTTGGCCAACCTCTTGCTGCGAACTCTTGTTACCACCTTCAATGGCACCACCAACTTTGCAACCTTGCTCGGAGCTTTCGCTTCCGACACTTATTTCGGCTCGTTACAAGACATTAGGATTTTCGACAATCGCTTCTTTTATGGGACTGCTGCTGATAGATTTTACAGCAGTGTTCAAGAACTTGCATCCTCCTCACTGCAAACCAGAAGAGAAAGGAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009506 GO:0009628 GO:0010232 GO:0010233 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015103 GO:0015112 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015698 GO:0015706 GO:0015711 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0032501 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072348 GO:0080167 GO:0090408 GO:0090448 GO:0090449 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1901264 GO:1901349 GO:1901505 GO:1901682 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

174

Amino Acids

20.08

Weight (kDa)

5.37

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18880 AT3G47960 AT5G62680
fragaria_vesca	FvH4_5g15612 FvH4_5g15612 FvH4_5g15612 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15670 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671
malus_domestica	MD06G1186500.v1.1 MD06G1186600.v1.1 MD06G1186700.v1.1 MD14G1192700.v1.1 MD14G1192800.v1.1 MD14G1193100.v1.1
prunus_persica	Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185200_v2.0.a1
pyrus_communis	pycom06g16580 pycom14g16040
rosa_chinensis	RchiOBHm_Chr7g0180421 RchiOBHm_Chr7g0180441
rosa_laevigata	RLG00000005265 RLG00000005267
rosa_multiflora	Rmu_sc0003322.1_g000002 Rmu_sc0003526.1_g000001 Rmu_sc0003526.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272870 Rroxscaffold_3G00272900
rosa_rugosa	Rorug06G0433000
rosa_samantha	Rh7AG033600 Rh7AG033700 Rh7BG033600 Rh7BG033700 Rh7CG035500 Rh7CG035600 Rh7DG034000 Rh7DG034200
rosa_wichuraiana	Rw7G002810 Rw7G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	341
AclI	AACGTT	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	300
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	2 cut(s)	337, 473
AluBI	AGCT	2 cut(s)	280, 371
AluI	AGCT	2 cut(s)	280, 371
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	2 cut(s)	313, 446
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspS9I	GGNCC	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	300, 433
BccI	CCATC	1 cut(s)	228
BisI	GCNGC	2 cut(s)	314, 447
BlsI	GCNGC	2 cut(s)	315, 448
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	3 cut(s)	286, 295, 343
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	491
BmuI	ACTGGG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	297
Bse1I	ACTGG	2 cut(s)	218, 295
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	3 cut(s)	214, 239, 482
BseNI	ACTGG	2 cut(s)	218, 295
BseRI	GAGGAG	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	300, 433
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	307, 454
BsmFI	GGGAC	2 cut(s)	307, 454
BsnI	GGCC	1 cut(s)	302
BspANI	GGCC	1 cut(s)	302
BspLI	GGNNCC	3 cut(s)	286, 295, 343
BspT107I	GGYRCC	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	218, 295
BssECI	CCNNGG	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	58, 154
BstF5I	GGATG	3 cut(s)	214, 239, 482
BstNSI	RCATGY	1 cut(s)	520
BstV1I	GCAGC	2 cut(s)	300, 433
BsuRI	GGCC	1 cut(s)	302
BtsCI	GGATG	3 cut(s)	214, 239, 482
BtsI	GCAGTG	2 cut(s)	472, 491
BtsIMutI	CAGTG	3 cut(s)	288, 472, 491
Cac8I	GCNNGC	2 cut(s)	58, 154
Cfr13I	GGNCC	1 cut(s)	294
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	9 cut(s)	13, 37, 61, 85, 109, 133, 157, 181, 517
CviJI	RGCY	4 cut(s)	280, 302, 371, 396
CviKI_1	RGCY	4 cut(s)	280, 302, 371, 396
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	9 cut(s)	16, 40, 64, 88, 112, 136, 160, 184, 520
FaqI	GGGAC	2 cut(s)	307, 454
FatI	CATG	9 cut(s)	12, 36, 60, 84, 108, 132, 156, 180, 516
Fnu4HI	GCNGC	2 cut(s)	314, 447
FokI	GGATG	3 cut(s)	221, 246, 469
Fsp4HI	GCNGC	2 cut(s)	314, 447
GluI	GCNGC	2 cut(s)	314, 447
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	302
Hin1II	CATG	9 cut(s)	16, 40, 64, 88, 112, 136, 160, 184, 520
Hpy188I	TCNGA	2 cut(s)	368, 382
Hpy188III	TCNNGA	1 cut(s)	473
HpyAV	CCTTC	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	3 cut(s)	356, 482, 496
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	9 cut(s)	16, 40, 64, 88, 112, 136, 160, 184, 520
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	4 cut(s)	231, 266, 276, 514
Lsp1109I	GCAGC	2 cut(s)	300, 433
LweI	GCATC	1 cut(s)	491
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	325, 399
MboII	GAAGA	7 cut(s)	31, 79, 127, 175, 199, 224, 516
MlsI	TGGCCA	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	5 cut(s)	191, 224, 317, 496, 499
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	302
NlaIII	CATG	9 cut(s)	16, 40, 64, 88, 112, 136, 160, 184, 520
NlaIV	GGNNCC	3 cut(s)	286, 295, 343
NspI	RCATGY	1 cut(s)	520
PciI	ACATGT	1 cut(s)	516
PkrI	GCNGC	2 cut(s)	315, 448
PpuMI	RGGWCCY	1 cut(s)	294
PscI	ACATGT	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	286, 295, 343
PspPI	GGNCC	1 cut(s)	294
PspPPI	RGGWCCY	1 cut(s)	294
PsrI	GAACNNNNNNTAC	2 cut(s)	310, 342
SatI	GCNGC	2 cut(s)	314, 447
Sau96I	GGNCC	1 cut(s)	294
SetI	ASST	8 cut(s)	202, 272, 282, 299, 309, 335, 362, 373
SfaNI	GCATC	1 cut(s)	491
SinI	GGWCC	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	297
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	295, 472, 498
TseI	GCWGC	2 cut(s)	313, 446
TspDTI	ATGAA	3 cut(s)	17, 225, 279
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	3 cut(s)	295, 472, 498
VpaK11BI	GGWCC	1 cut(s)	294
XceI	RCATGY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.