FvH4_5g15671

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
8858949 .. 8862094
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15671.t4

Sequence Viewer

Length: 1773 bp
ATGGAGAACAGTGAAAGAGAATCCATGGTGAAGGTGAAGGTGAATGAGGATCAGTGTTCAATAGCTGAAGAGAAAGTAATCTACAGAGGATGGAAAGCCATGCCATTTGTCATAGGAAATGAAACCTTTGAGAAGCTAGGAGCCATTGGCACCTTATCCAACCTCTTGGTCTATCTCACTAAAGAGTTCAACATGAGCAGCATTAGAGCTAATACTATACTCAGCATCTTCAATGGCACCACCAATTTTGCTACTTTGATTGGAGCTTTTGTATCCGACACATACTGGGGTCGTTTCAAGACCATTGCTTTTGCTTCAGTCGCTTCCTTAATGGGGCTGATCTTGATAGACTTCACTGCAATCTTTGGAAACCTCCATCCTCCCTCTTGCAGCGAACAAGACCGCAGCAGCAATAACTGCATAGGCCCAACAGGTGGCCAAATGGCATTTTTGGCAGCCGGTCTGGGACTACTAATAGTAGGAGCAGCTGGGATCAGACCATGTAACTTTGCATTTGGTGCAGACCAGTTCAACCCCAATACTGAATCTGGAAAGAAAGGAGTTAACAGCTTCTTCAATTGGTACTTCTTCACCTTCACTGTTGCACAGATGTTGTCCTTGACAGTCATTATTTATGTTCAGTCAAATGTTAGCTGGTCTCTGGGGTTTGGCATTCCAGCCATTCTGATGTTGATGTCATGTGCACTCTTCTTCATGGGTTCAAAATTGTATGTCAAAGTGAAAGCCAATGGTAGTCCAATGACAAGTGTGGCACAGGTCCTAGTGGTTGCTTTTAAGAAAAGGCATTTGAAGCAACCAGAGGAACCGTGGCTCTCCCTCTTTGTTTATTTGCCTCCCAATTCAATCAACTCAAAGCTTCCTTACACACATCAATTTAGATGCCTTGACAAAGCAGCAATCCTGACGCCGGAAGACAAATTAAACACAGATGGATCAGCAGCCAATCCATGGAGACTTTGCAGCATGCAGCAAGTAGAAGAAATGAAATGTCTAGTGAGACTGTTACCAATATGGGCTGCAGCCCTCGTGTACTATATTGTTATAGTCCAACAACACTCCTATACAACTTACCAAGCTCTTCAATGTGATAGAAGACTTACAAAACACTTCGAGATCCCAGCTGCATCCTACTATGTCTTCTTGATGATAGCCATGACCATTTGGATCCCTATCTATGACCGACTTGTCGTCCCATTTCTCCAAAGACGCACAGGGATAGAAGGAGGCATCACAGTGCTGCAAAGAATTGGAGCTGGCATTTTTCTCTCTATTGTCTCCATGTTAGTCTCTGCAATCGTAGAAGAGCGTCGAAGGTCATTAGCTCTAACCAAACCATTATCAGGTAGTAACGTTTCGTCCATGTCAGGCTTCTGGTTAATTCCTCAGCTCGCATTGGCTGGACTTGCAGAAGCATTCGCTGCCATTGGTCAAACTGAGTTCTACTACAAGCAATTCCCTGAAAACATGAGAAGCGTTGCAGGGTCTTTCTTCTTTTGTGGAATGGCAGGTTCAAATTACTTGAATAGTTTCTTGATTTCAGTAGTCCACAGAGCCACAGAGGGGGCTGCAACCGGAAATTGGCTGCCGGAAGATCTCAACAAGGGGAGGCTTGATTACTATTACTACTTGATTACTGCTATTGCCACTGTTAACTTCGGATACTTTTTGCTCATTGCAAGCTGGTATCAGTATAAAGGTACAGGGATCGATAATAGTACTCTTGAAGTCGAAGTTACTGAGAAAGTGGCCTAA

Protein Analysis

591

Amino Acids

65.56

Weight (kDa)

8.63

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 2 - 386 4.9e-78 POT family
MFS_1 PF07690 4 - 363 8.4e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1205
Acc36I ACCTGC 1 cut(s) 1517
AccB1I GGYRCC 2 cut(s) 149, 236
AccB7I CCANNNNNTGG 2 cut(s) 434, 969
AciI CCGC 1 cut(s) 403
AclI AACGTT 1 cut(s) 1371
AclWI GGATC 7 cut(s) 57, 500, 961, 1129, 1180, 1193, 1733
AcoI YGGCCR 1 cut(s) 436
AcuI CTGAAG 2 cut(s) 87, 300
AcyI GRCGYC 1 cut(s) 926
AfaI GTAC 4 cut(s) 584, 1052, 1720, 1738
AfiI CCNNNNNNNGG 7 cut(s) 333, 434, 928, 969, 1361, 1581, 1599
AhdI GACNNNNNGTC 1 cut(s) 1208
Alw21I GWGCWC 1 cut(s) 706
Alw26I GTCTC 5 cut(s) 663, 967, 1012, 1300, 1312
Alw44I GTGCAC 1 cut(s) 702
AlwI GGATC 7 cut(s) 57, 500, 961, 1129, 1180, 1193, 1733
AoxI GGCC 3 cut(s) 424, 436, 1767
ApaLI GTGCAC 1 cut(s) 702
Asp700I GAANNNNTTC 1 cut(s) 1547
AspS9I GGNCC 2 cut(s) 425, 778
AsuHPI GGTGA 4 cut(s) 40, 46, 52, 583
AvaII GGWCC 1 cut(s) 778
BaeGI GKGCMC 1 cut(s) 706
BalI TGGCCA 1 cut(s) 438
BamHI GGATCC 1 cut(s) 1185
BanI GGYRCC 2 cut(s) 149, 236
BauI CACGAG 1 cut(s) 1046
BbsI GAAGAC 3 cut(s) 939, 1120, 1150
Bbv12I GWGCWC 1 cut(s) 706
BbvCI CCTCAGC 1 cut(s) 1404
BccI CCATC 3 cut(s) 84, 384, 944
BciVI GTATCC 2 cut(s) 283, 1673
BcoDI GTCTC 5 cut(s) 663, 967, 1012, 1300, 1312
BfaI CTAG 3 cut(s) 137, 782, 1013
BfmI CTRYAG 2 cut(s) 82, 1038
BfuAI ACCTGC 1 cut(s) 1517
BfuI GTATCC 2 cut(s) 283, 1673
BglII AGATCT 1 cut(s) 1612
BmcAI AGTACT 1 cut(s) 1738
Bme18I GGWCC 1 cut(s) 778
BmeRI GACNNNNNGTC 1 cut(s) 1208
BmgT120I GGNCC 2 cut(s) 425, 778
BmiI GGNNCC 5 cut(s) 142, 151, 238, 825, 1187
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 4 cut(s) 234, 890, 1154, 1257
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 3 cut(s) 939, 1120, 1150
Bpu10I CCTNAGC 1 cut(s) 1404
Bsa29I ATCGAT 1 cut(s) 1728
BsaBI GATNNNNATC 1 cut(s) 1190
BsaHI GRCGYC 1 cut(s) 926
BsaI GGTCTC 1 cut(s) 663
BsaJI CCNNGG 3 cut(s) 24, 827, 968
BsaWI WCCGGW 1 cut(s) 1592
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 7 cut(s) 333, 434, 928, 969, 1361, 1581, 1599
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 2 cut(s) 290, 526
Bse3DI GCAATG 2 cut(s) 303, 1692
Bse8I GATNNNNATC 1 cut(s) 1190
BseCI ATCGAT 1 cut(s) 1728
BseDI CCNNGG 3 cut(s) 24, 827, 968
BseGI GGATG 3 cut(s) 95, 376, 1145
BseJI GATNNNNATC 1 cut(s) 1190
BseLI CCNNNNNNNGG 7 cut(s) 333, 434, 928, 969, 1361, 1581, 1599
BseMI GCAATG 2 cut(s) 303, 1692
BseMII CTCAG 4 cut(s) 235, 1418, 1446, 1749
BseNI ACTGG 2 cut(s) 290, 526
BseSI GKGCMC 1 cut(s) 706
BseYI CCCAGC 2 cut(s) 488, 1138
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 3 cut(s) 426, 438, 1769
BshNI GGYRCC 2 cut(s) 149, 236
BshVI ATCGAT 1 cut(s) 1728
BsiHKAI GWGCWC 1 cut(s) 706
BsiSI CCGG 4 cut(s) 459, 929, 1593, 1607
BslFI GGGAC 2 cut(s) 480, 1196
BslI CCNNNNNNNGG 7 cut(s) 333, 434, 928, 969, 1361, 1581, 1599
BsmAI GTCTC 5 cut(s) 663, 967, 1012, 1300, 1312
BsmFI GGGAC 2 cut(s) 480, 1196
BsmI GAATGC 2 cut(s) 672, 1433
BsnI GGCC 3 cut(s) 426, 438, 1769
Bso31I GGTCTC 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 706
Bsp143I GATC 8 cut(s) 49, 339, 492, 953, 1134, 1185, 1612, 1725
Bsp19I CCATGG 2 cut(s) 24, 968
BspACI CCGC 1 cut(s) 403
BspANI GGCC 3 cut(s) 426, 438, 1769
BspCNI CTCAG 4 cut(s) 234, 1417, 1447, 1750
BspDI ATCGAT 1 cut(s) 1728
BspLI GGNNCC 5 cut(s) 142, 151, 238, 825, 1187
BspMAI CTGCAG 1 cut(s) 1042
BspMI ACCTGC 1 cut(s) 1517
BspPI GGATC 7 cut(s) 57, 500, 961, 1129, 1180, 1193, 1733
BspQI GCTCTTC 2 cut(s) 1104, 1317
BspT107I GGYRCC 2 cut(s) 149, 236
BspTNI GGTCTC 1 cut(s) 663
BsrDI GCAATG 2 cut(s) 303, 1692
BsrFI RCCGGY 1 cut(s) 458
BsrI ACTGG 2 cut(s) 290, 526
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 3 cut(s) 24, 827, 968
BssMI GATC 8 cut(s) 49, 339, 492, 953, 1134, 1185, 1612, 1725
BssNI GRCGYC 1 cut(s) 926
BssSI CACGAG 1 cut(s) 1046
BssT1I CCWWGG 2 cut(s) 24, 968
Bst2BI CACGAG 1 cut(s) 1046
Bst4CI ACNGT 7 cut(s) 11, 601, 625, 828, 1023, 1255, 1669
Bst6I CTCTTC 4 cut(s) 63, 713, 1104, 1317
BstACI GRCGYC 1 cut(s) 926
BstAPI GCANNNNNTGC 3 cut(s) 417, 518, 1439
BstC8I GCNNGC 4 cut(s) 986, 1276, 1410, 1699
BstDEI CTNAG 4 cut(s) 221, 1404, 1455, 1758
BstDSI CCRYGG 3 cut(s) 24, 827, 968
BstF5I GGATG 3 cut(s) 95, 376, 1145
BstKTI GATC 8 cut(s) 52, 342, 495, 956, 1137, 1188, 1615, 1728
BstMAI GTCTC 5 cut(s) 663, 967, 1012, 1300, 1312
BstMBI GATC 8 cut(s) 49, 339, 492, 953, 1134, 1185, 1612, 1725
BstMWI GCNNNNNNNGC 7 cut(s) 320, 417, 452, 518, 811, 1424, 1439
BstNSI RCATGY 1 cut(s) 988
BstSFI CTRYAG 2 cut(s) 82, 1038
BstSLI GKGCMC 1 cut(s) 706
BstV2I GAAGAC 3 cut(s) 939, 1120, 1150
BstX2I RGATCY 3 cut(s) 1134, 1185, 1612
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 3 cut(s) 1134, 1185, 1612
Bsu15I ATCGAT 1 cut(s) 1728
BsuI GTATCC 2 cut(s) 283, 1673
BsuRI GGCC 3 cut(s) 426, 438, 1769
BsuTUI ATCGAT 1 cut(s) 1728
BtgI CCRYGG 3 cut(s) 24, 827, 968
BtsCI GGATG 3 cut(s) 95, 376, 1145
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 6 cut(s) 16, 59, 354, 597, 1260, 1665
BveI ACCTGC 1 cut(s) 1517
Cac8I GCNNGC 4 cut(s) 986, 1276, 1410, 1699
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 2 cut(s) 425, 778
ClaI ATCGAT 1 cut(s) 1728
CseI GACGC 3 cut(s) 934, 1236, 1316
Csp6I GTAC 4 cut(s) 583, 1051, 1719, 1737
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviQI GTAC 4 cut(s) 583, 1051, 1719, 1737
DdeI CTNAG 4 cut(s) 221, 1404, 1455, 1758
DpnI GATC 8 cut(s) 51, 341, 494, 955, 1136, 1187, 1614, 1727
DpnII GATC 8 cut(s) 49, 339, 492, 953, 1134, 1185, 1612, 1725
DrdI GACNNNNNNGTC 1 cut(s) 1205
DriI GACNNNNNGTC 1 cut(s) 1208
DseDI GACNNNNNNGTC 1 cut(s) 1205
EaeI YGGCCR 1 cut(s) 436
Eam1104I CTCTTC 4 cut(s) 63, 713, 1104, 1317
Eam1105I GACNNNNNGTC 1 cut(s) 1208
EarI CTCTTC 4 cut(s) 63, 713, 1104, 1317
Eco130I CCWWGG 2 cut(s) 24, 968
Eco31I GGTCTC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 87, 300
EcoO109I RGGNCCY 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 24, 968
ErhI CCWWGG 2 cut(s) 24, 968
FaqI GGGAC 2 cut(s) 480, 1196
FokI GGATG 3 cut(s) 102, 363, 1132
FspBI CTAG 3 cut(s) 137, 782, 1013
GsaI CCCAGC 2 cut(s) 492, 1142
HaeIII GGCC 3 cut(s) 426, 438, 1769
HapII CCGG 4 cut(s) 459, 929, 1593, 1607
HgaI GACGC 3 cut(s) 934, 1236, 1316
Hin1I GRCGYC 1 cut(s) 926
HincII GTYRAC 2 cut(s) 565, 1672
HindII GTYRAC 2 cut(s) 565, 1672
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 2 cut(s) 20, 545
HpaI GTTAAC 2 cut(s) 565, 1672
HpaII CCGG 4 cut(s) 459, 929, 1593, 1607
HphI GGTGA 4 cut(s) 40, 46, 52, 583
Hpy166II GTNNAC 5 cut(s) 565, 704, 1051, 1567, 1672
Hpy188I TCNGA 4 cut(s) 277, 497, 687, 1679
Hpy188III TCNNGA 8 cut(s) 298, 343, 549, 922, 1132, 1162, 1552, 1742
Hpy8I GTNNAC 5 cut(s) 565, 704, 1051, 1567, 1672
Hpy99I CGWCG 1 cut(s) 1332
HpyAV CCTTC 5 cut(s) 25, 31, 604, 1235, 1326
HpyCH4III ACNGT 7 cut(s) 11, 601, 625, 828, 1023, 1255, 1669
HpyCH4IV ACGT 1 cut(s) 1371
HpyF10VI GCNNNNNNNGC 7 cut(s) 320, 417, 452, 518, 811, 1424, 1439
HpyF3I CTNAG 4 cut(s) 221, 1404, 1455, 1758
HpySE526I ACGT 1 cut(s) 1371
Hsp92I GRCGYC 1 cut(s) 926
KspAI GTTAAC 2 cut(s) 565, 1672
Kzo9I GATC 8 cut(s) 49, 339, 492, 953, 1134, 1185, 1612, 1725
LguI GCTCTTC 2 cut(s) 1104, 1317
LmnI GCTCC 4 cut(s) 140, 263, 482, 1271
LweI GCATC 4 cut(s) 234, 890, 1154, 1257
MaeI CTAG 3 cut(s) 137, 782, 1013
MaeII ACGT 1 cut(s) 1371
MaeIII GTNAC 4 cut(s) 503, 1023, 1367, 1753
MalI GATC 8 cut(s) 51, 341, 494, 955, 1136, 1187, 1614, 1727
MboI GATC 8 cut(s) 49, 339, 492, 953, 1134, 1185, 1612, 1725
MfeI CAATTG 1 cut(s) 577
MflI RGATCY 3 cut(s) 1134, 1185, 1612
MhlI GDGCHC 1 cut(s) 706
MlsI TGGCCA 1 cut(s) 438
MluNI TGGCCA 1 cut(s) 438
MmeI TCCRAC 3 cut(s) 183, 300, 1093
Mox20I TGGCCA 1 cut(s) 438
MroXI GAANNNNTTC 1 cut(s) 1547
MscI TGGCCA 1 cut(s) 438
MseI TTAA 6 cut(s) 329, 564, 795, 941, 1397, 1671
MslI CAYNNNNRTG 2 cut(s) 686, 1253
Msp20I TGGCCA 1 cut(s) 438
MspA1I CMGCKG 2 cut(s) 488, 1142
MspI CCGG 4 cut(s) 459, 929, 1593, 1607
MunI CAATTG 1 cut(s) 577
Mva1269I GAATGC 2 cut(s) 672, 1433
MwoI GCNNNNNNNGC 7 cut(s) 320, 417, 452, 518, 811, 1424, 1439
NcoI CCATGG 2 cut(s) 24, 968
NdeII GATC 8 cut(s) 49, 339, 492, 953, 1134, 1185, 1612, 1725
NlaIV GGNNCC 5 cut(s) 142, 151, 238, 825, 1187
NspI RCATGY 1 cut(s) 988
PaeI GCATGC 1 cut(s) 988
PciSI GCTCTTC 2 cut(s) 1104, 1317
PctI GAATGC 2 cut(s) 672, 1433
PdmI GAANNNNTTC 1 cut(s) 1547
PfeI GAWTC 2 cut(s) 20, 545
PflMI CCANNNNNTGG 2 cut(s) 434, 969
PpuMI RGGWCCY 1 cut(s) 778
Psp1406I AACGTT 1 cut(s) 1371
Psp5II RGGWCCY 1 cut(s) 778
PspFI CCCAGC 2 cut(s) 488, 1138
PspN4I GGNNCC 5 cut(s) 142, 151, 238, 825, 1187
PspPI GGNCC 2 cut(s) 425, 778
PspPPI RGGWCCY 1 cut(s) 778
PstI CTGCAG 1 cut(s) 1042
PsuI RGATCY 3 cut(s) 1134, 1185, 1612
PvuII CAGCTG 2 cut(s) 488, 1142
RsaI GTAC 4 cut(s) 584, 1052, 1720, 1738
RsaNI GTAC 4 cut(s) 583, 1051, 1719, 1737
RseI CAYNNNNRTG 2 cut(s) 686, 1253
SapI GCTCTTC 2 cut(s) 1104, 1317
SaqAI TTAA 6 cut(s) 329, 564, 795, 941, 1397, 1671
Sau3AI GATC 8 cut(s) 49, 339, 492, 953, 1134, 1185, 1612, 1725
Sau96I GGNCC 2 cut(s) 425, 778
ScaI AGTACT 1 cut(s) 1738
SduI GDGCHC 1 cut(s) 706
SfaNI GCATC 4 cut(s) 234, 890, 1154, 1257
SfcI CTRYAG 2 cut(s) 82, 1038
SinI GGWCC 1 cut(s) 778
SmiMI CAYNNNNRTG 2 cut(s) 686, 1253
SphI GCATGC 1 cut(s) 988
SsiI CCGC 1 cut(s) 403
SspMI CTAG 3 cut(s) 137, 782, 1013
StyI CCWWGG 2 cut(s) 24, 968
TaaI ACNGT 7 cut(s) 11, 601, 625, 828, 1023, 1255, 1669
TaiI ACGT 1 cut(s) 1374
TaqI TCGA 4 cut(s) 1131, 1330, 1728, 1749
TaqII GACCGA 1 cut(s) 1215
TatI WGTACW 2 cut(s) 1050, 1736
TfiI GAWTC 2 cut(s) 20, 545
Tru1I TTAA 6 cut(s) 329, 564, 795, 941, 1397, 1671
Tru9I TTAA 6 cut(s) 329, 564, 795, 941, 1397, 1671
TscAI CASTG 6 cut(s) 16, 59, 361, 604, 1260, 1672
TspDTI ATGAA 3 cut(s) 135, 703, 1019
TspRI CASTG 6 cut(s) 16, 59, 361, 604, 1260, 1672
Van91I CCANNNNNTGG 2 cut(s) 434, 969
VneI GTGCAC 1 cut(s) 702
VpaK11BI GGWCC 1 cut(s) 778
XceI RCATGY 1 cut(s) 988
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmnI GAANNNNTTC 1 cut(s) 1547
XspI CTAG 3 cut(s) 137, 782, 1013
ZrmI AGTACT 1 cut(s) 1738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.