Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001711

Physical Location & Seq

Genomic Coordinates Reverse (-)

2249091 .. 2249534

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG033700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGAATGGACACAAGAACAGGTGCAATTTCTTCCATGTCTGCCTTTTGGCTCATACCACAGTTGACCCTAATAGGGCTCGCTGAGGCATTTACCGTCATAGCCCAAGTGGAGTTCTACTACAAGCAATTCCCAGAAAACATGAGAAGTATTGGTGGTTCTTTTCTGTTTGTGGGGTTTGCAGGGTCGAATTACTTGAATGGTTTATTGGTGTCGATAGTCCACCACACGACTAGTCGTAATGGGTCTATGGGGGACTGGTTGCCTGAGGATCTTAACAAGGGGAAATTGGATTACTTTTACTACTTGGTTGCTGGATTGGAGTTCATAAATTTGGTTTATTTTGTGCTAGTTGCTAGGTGGTTTAAGTACAAAGGAAGTGGTGGCACTGTTGCCTCTGAAGTTGGGTTGGAAAATATGCAATCTGAGGACCATCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009506 GO:0009628 GO:0010232 GO:0010233 GO:0015075 GO:0015077 GO:0015078 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015711 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0032501 GO:0034220 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072348 GO:0080167 GO:0090448 GO:0090449 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1901264 GO:1901349 GO:1901505 GO:1901682 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

5.23

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	12 - 80	1.4e-10	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18880 AT3G47960 AT5G62680
fragaria_vesca	FvH4_5g15612 FvH4_5g15612 FvH4_5g15612 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15670 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671
malus_domestica	MD06G1186500.v1.1 MD06G1186600.v1.1 MD06G1186700.v1.1 MD14G1192700.v1.1 MD14G1192800.v1.1 MD14G1193100.v1.1
prunus_persica	Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185200_v2.0.a1
pyrus_communis	pycom06g16580 pycom14g16040
rosa_chinensis	RchiOBHm_Chr7g0180421 RchiOBHm_Chr7g0180441
rosa_laevigata	RLG00000005265 RLG00000005267
rosa_multiflora	Rmu_sc0003322.1_g000002 Rmu_sc0003526.1_g000001 Rmu_sc0003526.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272870 Rroxscaffold_3G00272900
rosa_rugosa	Rorug06G0433000
rosa_samantha	Rh7AG033600 Rh7AG033700 Rh7BG033600 Rh7BG033700 Rh7CG035500 Rh7CG035600 Rh7DG034000 Rh7DG034200
rosa_wichuraiana	Rw7G002810 Rw7G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	199
AhlI	ACTAGT	1 cut(s)	233
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AlwI	GGATC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	441
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	3 cut(s)	234, 350, 357
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	3 cut(s)	75, 258, 417
BseNI	ACTGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	271
BspCNI	CTCAG	3 cut(s)	76, 259, 418
BspPI	GGATC	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	263
BssMI	GATC	1 cut(s)	271
Bst4CI	ACNGT	3 cut(s)	63, 97, 391
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	3 cut(s)	84, 267, 426
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	370
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	2 cut(s)	37, 142
CviJI	RGCY	3 cut(s)	52, 79, 104
CviKI_1	RGCY	3 cut(s)	52, 79, 104
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	3 cut(s)	84, 267, 426
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	420
Eco81I	CCTNAGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	2 cut(s)	40, 145
FaiI	YATR	7 cut(s)	38, 56, 101, 143, 251, 329, 419
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	2 cut(s)	36, 141
FriOI	GRGCYC	1 cut(s)	81
FspBI	CTAG	3 cut(s)	234, 350, 357
Hin1II	CATG	2 cut(s)	40, 145
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	66, 223
Hpy188I	TCNGA	2 cut(s)	400, 427
Hpy8I	GTNNAC	2 cut(s)	66, 223
HpyCH4III	ACNGT	3 cut(s)	63, 97, 391
HpyCH4V	TGCA	3 cut(s)	26, 182, 421
HpyF3I	CTNAG	3 cut(s)	84, 267, 426
Hsp92II	CATG	2 cut(s)	40, 145
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	6 cut(s)	6, 147, 168, 244, 279, 300
MaeI	CTAG	3 cut(s)	234, 350, 357
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	1 cut(s)	24
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	5 cut(s)	27, 128, 190, 287, 331
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	4 cut(s)	79, 262, 406, 421
MseI	TTAA	2 cut(s)	276, 366
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	2 cut(s)	40, 145
PspPI	GGNCC	1 cut(s)	430
PsrI	GAACNNNNNNTAC	2 cut(s)	142, 174
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	276, 366
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	2 cut(s)	25, 362
SinI	GGWCC	1 cut(s)	430
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	5 cut(s)	27, 128, 190, 287, 331
SspMI	CTAG	3 cut(s)	234, 350, 357
TaaI	ACNGT	3 cut(s)	63, 97, 391
TaqI	TCGA	2 cut(s)	188, 215
TasI	AATT	5 cut(s)	27, 128, 190, 287, 331
TatI	WGTACW	1 cut(s)	369
Tru1I	TTAA	2 cut(s)	276, 366
Tru9I	TTAA	2 cut(s)	276, 366
TscAI	CASTG	1 cut(s)	394
TspDTI	ATGAA	1 cut(s)	316
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	1 cut(s)	331
XspI	CTAG	3 cut(s)	234, 350, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.