Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001711

Physical Location & Seq

Genomic Coordinates Reverse (-)

28366495 .. 28368035

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1192700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTACGTGAAAGTGAAAGCCTCCGGTAGTCCAATGGAGAGTGTAGCACAAGTGGTGGCCGTTTCCTTTGCGAAAAGGCACTTGAAAGTTAAAGAGCCAGAGCATCCATGCCTCTCCATGTTTATGTACATGCCTCCCAATTCAATCAACTCCAAGCTTCCTTACACAAATCAATTCAGATGCCTTGACAAGGCAGCAATTCTTACGCCTGAAGACAAAATGAACTCGGATGGATCAGCTGCTGATCCGTGGAGACTTTGCAGCATGCAGCAAGTGGAAGAAGTGAAATGCCTGCTGAGAGTGTTGCCAATATGGGCAGCAGCCCTCGTATTCCATATTCCCATAGTCCAGCAGCAAACCTTTGTTGTCTTCCAAGCCCTTCAATCCAATCGACGCCTCGGAAAAACCAGCTTCCAAATCTACGACCGCCTTCTTGTCCCATTCCTCCAAAGGCTCAAGGGAAAAGAAGGCGGCATCACATTGCTGCAAAGAATTGGAATCGGCATTTTTCTCTCTGTGATCGCCATGCTAGTATCTGGATTTGTAGAAGGACACCGAAGGACTATAGCGCTAACAAAACCAATTCCAGGAATCCAGACAAGGGGTGACATTTCATCCATGTCCGGCTTTTGGCTGGTCCCTCAGCTCACACTAACCAGGCTTGCTGAAGCGTTCACCTCCGTTGGCCAAGTCGAGTTCTACTACAAGCAATTCCCGGAAAACATGAGAAGCATTGGAGGGTCTATCTACTTTTGTAGACTGGCTAGTTCTAGTTACTTGAGTAGTGCGTTAATCGTCATAGTTCACCGGAATACTGAGAGGGCTGAGACCGGGAATTGGCTGCCGGAAGATCTCAACAAGGGGAGGCTGGATCACTACTATTACTTGATTGCTGCTCTTGGAGCCATTAGTTTGGGATACTATTTAGTGTGTGCAAAGTGGTACAAGTACAAAGGTGATGGGGACAACAATGCCCTTCCAGTTGAAGTAGTGCAGAAATCACATGAACATGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009506 GO:0009628 GO:0010232 GO:0010233 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015103 GO:0015112 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015698 GO:0015706 GO:0015711 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0032501 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072348 GO:0080167 GO:0090408 GO:0090448 GO:0090449 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1901264 GO:1901349 GO:1901505 GO:1901682 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

340

Amino Acids

38.18

Weight (kDa)

9.25

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 280	3.8e-30	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18880 AT3G47960 AT5G62680
fragaria_vesca	FvH4_5g15612 FvH4_5g15612 FvH4_5g15612 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15670 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671
malus_domestica	MD06G1186500.v1.1 MD06G1186600.v1.1 MD06G1186700.v1.1 MD14G1192700.v1.1 MD14G1192800.v1.1 MD14G1193100.v1.1
prunus_persica	Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185200_v2.0.a1
pyrus_communis	pycom06g16580 pycom14g16040
rosa_chinensis	RchiOBHm_Chr7g0180421 RchiOBHm_Chr7g0180441
rosa_laevigata	RLG00000005265 RLG00000005267
rosa_multiflora	Rmu_sc0003322.1_g000002 Rmu_sc0003526.1_g000001 Rmu_sc0003526.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272870 Rroxscaffold_3G00272900
rosa_rugosa	Rorug06G0433000
rosa_samantha	Rh7AG033600 Rh7AG033700 Rh7BG033600 Rh7BG033700 Rh7CG035500 Rh7CG035600 Rh7DG034000 Rh7DG034200
rosa_wichuraiana	Rw7G002810 Rw7G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	757
AciI	CCGC	2 cut(s)	427, 471
AclWI	GGATC	3 cut(s)	239, 241, 879
AcoI	YGGCCR	2 cut(s)	57, 685
AcuI	CTGAAG	2 cut(s)	231, 687
AcyI	GRCGYC	1 cut(s)	394
AfaI	GTAC	4 cut(s)	5, 128, 944, 950
AfeI	AGCGCT	1 cut(s)	570
AfiI	CCNNNNNNNGG	5 cut(s)	190, 587, 601, 630, 837
AgsI	TTSAA	4 cut(s)	85, 144, 383, 986
AjnI	CCWGG	2 cut(s)	586, 656
AluBI	AGCT	4 cut(s)	157, 239, 411, 646
AluI	AGCT	4 cut(s)	157, 239, 411, 646
Alw26I	GTCTC	2 cut(s)	247, 821
AlwI	GGATC	3 cut(s)	239, 241, 879
AlwNI	CAGNNNCTG	1 cut(s)	242
Aor51HI	AGCGCT	1 cut(s)	570
AoxI	GGCC	2 cut(s)	57, 685
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	1 cut(s)	637
AsuC2I	CCSGG	2 cut(s)	716, 832
AsuHPI	GGTGA	4 cut(s)	617, 667, 797, 968
AvaII	GGWCC	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	687
BbsI	GAAGAC	2 cut(s)	219, 361
BbvCI	CCTCAGC	1 cut(s)	642
BccI	CCATC	2 cut(s)	224, 953
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	588, 658
BciVI	GTATCC	1 cut(s)	911
BcnI	CCSGG	2 cut(s)	716, 832
BcoDI	GTCTC	2 cut(s)	247, 821
BfaI	CTAG	3 cut(s)	530, 765, 771
BfmI	CTRYAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	572
BfuI	GTATCC	1 cut(s)	911
BglII	AGATCT	1 cut(s)	850
Bme1390I	CCNGG	4 cut(s)	588, 658, 716, 832
Bme18I	GGWCC	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	637
BmiI	GGNNCC	2 cut(s)	639, 904
BmrFI	CCNGG	4 cut(s)	588, 658, 716, 832
BmsI	GCATC	3 cut(s)	112, 170, 483
BpiI	GAAGAC	2 cut(s)	219, 361
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	440, 799
BpuMI	CCSGG	2 cut(s)	716, 832
BsaAI	YACGTR	1 cut(s)	7
BsaHI	GRCGYC	1 cut(s)	394
BsaI	GGTCTC	1 cut(s)	821
BsaJI	CCNNGG	2 cut(s)	248, 397
BsaWI	WCCGGW	2 cut(s)	23, 807
Bsc4I	CCNNNNNNNGG	5 cut(s)	190, 587, 601, 630, 837
Bse1I	ACTGG	2 cut(s)	765, 980
Bse3DI	GCAATG	1 cut(s)	479
BseBI	CCWGG	2 cut(s)	588, 658
BseDI	CCNNGG	2 cut(s)	248, 397
BseGI	GGATG	3 cut(s)	103, 235, 614
BseLI	CCNNNNNNNGG	5 cut(s)	190, 587, 601, 630, 837
BseMI	GCAATG	1 cut(s)	479
BseMII	CTCAG	4 cut(s)	287, 656, 807, 816
BseNI	ACTGG	2 cut(s)	765, 980
BsgI	GTGCAG	1 cut(s)	1013
Bsh1285I	CGRYCG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	59, 687
BsiEI	CGRYCG	1 cut(s)	427
BsiSI	CCGG	6 cut(s)	24, 624, 716, 808, 831, 845
BslFI	GGGAC	3 cut(s)	422, 623, 977
BslI	CCNNNNNNNGG	5 cut(s)	190, 587, 601, 630, 837
BsmAI	GTCTC	2 cut(s)	247, 821
BsmFI	GGGAC	3 cut(s)	422, 623, 977
BsnI	GGCC	2 cut(s)	59, 687
Bso31I	GGTCTC	1 cut(s)	821
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	5 cut(s)	233, 244, 519, 850, 871
BspACI	CCGC	2 cut(s)	427, 471
BspANI	GGCC	2 cut(s)	59, 687
BspCNI	CTCAG	4 cut(s)	288, 655, 808, 817
BspLI	GGNNCC	2 cut(s)	639, 904
BspPI	GGATC	3 cut(s)	239, 241, 879
BspTNI	GGTCTC	1 cut(s)	821
BsrDI	GCAATG	1 cut(s)	479
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	765, 980
BssECI	CCNNGG	2 cut(s)	248, 397
BssMI	GATC	5 cut(s)	233, 244, 519, 850, 871
BssNI	GRCGYC	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	588, 658
BstACI	GRCGYC	1 cut(s)	394
BstAUI	TGTACA	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	3 cut(s)	266, 293, 663
BstDEI	CTNAG	4 cut(s)	296, 642, 816, 825
BstDSI	CCRYGG	1 cut(s)	248
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	3 cut(s)	103, 235, 614
BstH2I	RGCGCY	1 cut(s)	572
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	5 cut(s)	236, 247, 522, 853, 874
BstMAI	GTCTC	2 cut(s)	247, 821
BstMBI	GATC	5 cut(s)	233, 244, 519, 850, 871
BstMCI	CGRYCG	1 cut(s)	427
BstMWI	GCNNNNNNNGC	1 cut(s)	902
BstNI	CCWGG	2 cut(s)	588, 658
BstNSI	RCATGY	2 cut(s)	133, 268
BstSCI	CCNGG	4 cut(s)	586, 656, 714, 830
BstSFI	CTRYAG	1 cut(s)	564
BstV2I	GAAGAC	2 cut(s)	219, 361
BstX2I	RGATCY	1 cut(s)	850
BstXI	CCANNNNNNTGG	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	850
BsuI	GTATCC	1 cut(s)	911
BsuRI	GGCC	2 cut(s)	59, 687
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	3 cut(s)	103, 235, 614
Cac8I	GCNNGC	3 cut(s)	266, 293, 663
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	637
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	4 cut(s)	4, 127, 943, 949
CviAII	CATG	9 cut(s)	108, 118, 130, 265, 526, 619, 724, 1004, 1010
CviQI	GTAC	4 cut(s)	4, 127, 943, 949
DdeI	CTNAG	4 cut(s)	296, 642, 816, 825
DpnI	GATC	5 cut(s)	235, 246, 521, 852, 873
DpnII	GATC	5 cut(s)	233, 244, 519, 850, 871
EaeI	YGGCCR	2 cut(s)	57, 685
Eco31I	GGTCTC	1 cut(s)	821
Eco47I	GGWCC	1 cut(s)	637
Eco47III	AGCGCT	1 cut(s)	570
Eco57I	CTGAAG	2 cut(s)	231, 687
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	586, 656
FaeI	CATG	9 cut(s)	111, 121, 133, 268, 529, 622, 727, 1007, 1013
FaqI	GGGAC	3 cut(s)	422, 623, 977
FatI	CATG	9 cut(s)	107, 117, 129, 264, 525, 618, 723, 1003, 1009
FblI	GTMKAC	1 cut(s)	757
FokI	GGATG	3 cut(s)	90, 242, 601
FspBI	CTAG	3 cut(s)	530, 765, 771
GlaI	GCGC	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	572
HaeIII	GGCC	2 cut(s)	59, 687
HapII	CCGG	6 cut(s)	24, 624, 716, 808, 831, 845
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	1 cut(s)	571
Hin1I	GRCGYC	1 cut(s)	394
Hin1II	CATG	9 cut(s)	111, 121, 133, 268, 529, 622, 727, 1007, 1013
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	2 cut(s)	498, 591
HpaII	CCGG	6 cut(s)	24, 624, 716, 808, 831, 845
HphI	GGTGA	4 cut(s)	617, 667, 797, 968
Hpy166II	GTNNAC	3 cut(s)	675, 758, 805
Hpy188I	TCNGA	3 cut(s)	179, 229, 401
Hpy188III	TCNNGA	2 cut(s)	537, 595
Hpy8I	GTNNAC	3 cut(s)	675, 758, 805
Hpy99I	CGWCG	1 cut(s)	396
HpyAV	CCTTC	6 cut(s)	389, 440, 461, 542, 552, 986
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	5 cut(s)	261, 268, 487, 935, 994
HpyF10VI	GCNNNNNNNGC	1 cut(s)	902
HpyF3I	CTNAG	4 cut(s)	296, 642, 816, 825
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	394
Hsp92II	CATG	9 cut(s)	111, 121, 133, 268, 529, 622, 727, 1007, 1013
HspAI	GCGC	1 cut(s)	569
Kzo9I	GATC	5 cut(s)	233, 244, 519, 850, 871
LmnI	GCTCC	1 cut(s)	902
LweI	GCATC	3 cut(s)	112, 170, 483
MaeI	CTAG	3 cut(s)	530, 765, 771
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	605, 773
MalI	GATC	5 cut(s)	235, 246, 521, 852, 873
MboI	GATC	5 cut(s)	233, 244, 519, 850, 871
MboII	GAAGA	4 cut(s)	224, 290, 361, 860
MflI	RGATCY	1 cut(s)	850
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	7 cut(s)	139, 173, 198, 492, 582, 710, 835
MluNI	TGGCCA	1 cut(s)	687
Mox20I	TGGCCA	1 cut(s)	687
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	2 cut(s)	90, 791
MslI	CAYNNNNRTG	2 cut(s)	122, 1008
Msp20I	TGGCCA	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	6 cut(s)	24, 624, 716, 808, 831, 845
MspR9I	CCNGG	4 cut(s)	588, 658, 716, 832
MvaI	CCWGG	2 cut(s)	588, 658
MwoI	GCNNNNNNNGC	1 cut(s)	902
NciI	CCSGG	2 cut(s)	716, 832
NdeII	GATC	5 cut(s)	233, 244, 519, 850, 871
NlaIII	CATG	9 cut(s)	111, 121, 133, 268, 529, 622, 727, 1007, 1013
NlaIV	GGNNCC	2 cut(s)	639, 904
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	2 cut(s)	133, 268
PaeI	GCATGC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	498, 591
PfoI	TCCNGGA	2 cut(s)	586, 714
Ppu21I	YACGTR	1 cut(s)	7
Psp6I	CCWGG	2 cut(s)	586, 656
PspGI	CCWGG	2 cut(s)	586, 656
PspN4I	GGNNCC	2 cut(s)	639, 904
PspPI	GGNCC	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	850
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	4 cut(s)	5, 128, 944, 950
RsaNI	GTAC	4 cut(s)	4, 127, 943, 949
RseI	CAYNNNNRTG	2 cut(s)	122, 1008
SaqAI	TTAA	2 cut(s)	90, 791
Sau3AI	GATC	5 cut(s)	233, 244, 519, 850, 871
Sau96I	GGNCC	1 cut(s)	637
ScrFI	CCNGG	4 cut(s)	588, 658, 716, 832
SetI	ASST	8 cut(s)	9, 159, 241, 362, 413, 648, 680, 958
SfaNI	GCATC	3 cut(s)	112, 170, 483
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	2 cut(s)	122, 1008
SmlI	CTYRAG	2 cut(s)	455, 778
SmoI	CTYRAG	2 cut(s)	455, 778
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	7 cut(s)	139, 173, 198, 492, 582, 710, 835
SsiI	CCGC	2 cut(s)	427, 471
SspMI	CTAG	3 cut(s)	530, 765, 771
StyD4I	CCNGG	4 cut(s)	586, 656, 714, 830
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	391, 693
TasI	AATT	7 cut(s)	139, 173, 198, 492, 582, 710, 835
TatI	WGTACW	2 cut(s)	126, 948
TauI	GCSGC	1 cut(s)	474
TfiI	GAWTC	2 cut(s)	498, 591
Tru1I	TTAA	2 cut(s)	90, 791
Tru9I	TTAA	2 cut(s)	90, 791
TseFI	GTSAC	1 cut(s)	605
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	3 cut(s)	236, 603, 1020
TspGWI	ACGGA	2 cut(s)	237, 670
VpaK11BI	GGWCC	1 cut(s)	637
XagI	CCTNNNNNAGG	1 cut(s)	188
XceI	RCATGY	2 cut(s)	133, 268
XmiI	GTMKAC	1 cut(s)	757
XspI	CTAG	3 cut(s)	530, 765, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.