Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001711

Physical Location & Seq

Genomic Coordinates Reverse (-)

32431194 .. 32431469

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1186700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAGAAGCATTGGGGGTTCATTTTTGTTTGTAGGCAAGGCAATGTCCAATTACCTTATTAGTTTTTTGGTGTCAATAGTTCACCATACCAGTGATTGGCTGCCTGAAGATCTTAACACCGAGATTCGATTGCTTTTATTATGGGTTGCTGTATTGGAGGCCATGAATCTTGTCTATTTCGTAGCGCTTGCTAGGTGGTTTGAGTACAAACGAAGTTGTGAAAGTGCCTCTGAAGTTTGGATGGAGAATATGCAATCTGAGAAACGTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009506 GO:0009628 GO:0010232 GO:0010233 GO:0015075 GO:0015077 GO:0015078 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015711 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0032501 GO:0034220 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072348 GO:0080167 GO:0090448 GO:0090449 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1901264 GO:1901349 GO:1901505 GO:1901682 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

92

Amino Acids

10.62

Weight (kDa)

5.59

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18880 AT3G47960 AT5G62680
fragaria_vesca	FvH4_5g15612 FvH4_5g15612 FvH4_5g15612 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15670 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671
malus_domestica	MD06G1186500.v1.1 MD06G1186600.v1.1 MD06G1186700.v1.1 MD14G1192700.v1.1 MD14G1192800.v1.1 MD14G1193100.v1.1
prunus_persica	Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185200_v2.0.a1
pyrus_communis	pycom06g16580 pycom14g16040
rosa_chinensis	RchiOBHm_Chr7g0180421 RchiOBHm_Chr7g0180441
rosa_laevigata	RLG00000005265 RLG00000005267
rosa_multiflora	Rmu_sc0003322.1_g000002 Rmu_sc0003526.1_g000001 Rmu_sc0003526.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272870 Rroxscaffold_3G00272900
rosa_rugosa	Rorug06G0433000
rosa_samantha	Rh7AG033600 Rh7AG033700 Rh7BG033600 Rh7BG033700 Rh7CG035500 Rh7CG035600 Rh7DG034000 Rh7DG034200
rosa_wichuraiana	Rw7G002810 Rw7G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	96
AcuI	CTGAAG	2 cut(s)	126, 252
AfaI	GTAC	1 cut(s)	206
AfeI	AGCGCT	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	96
Aor51HI	AGCGCT	1 cut(s)	186
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	188
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	96
BsnI	GGCC	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	2 cut(s)	100, 161
CviKI_1	RGCY	2 cut(s)	100, 161
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eco47III	AGCGCT	1 cut(s)	186
Eco57I	CTGAAG	2 cut(s)	126, 252
FaeI	CATG	1 cut(s)	166
FaiI	YATR	4 cut(s)	87, 142, 164, 251
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	124, 166
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	232, 259
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	2 cut(s)	103, 117
Lsp1109I	GCAGC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	265
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	2 cut(s)	151, 238
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	90
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	124, 166
PflMI	CCANNNNNTGG	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	109
SetI	ASST	3 cut(s)	57, 197, 268
SgeI	CNNG	8 cut(s)	49, 102, 116, 133, 175, 182, 200, 204
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	192
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	127
TasI	AATT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	124, 166
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	9, 179
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	96
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.