Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001711

Physical Location & Seq

Genomic Coordinates Forward (+)

8831225 .. 8834477

Gene Structure 3253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15620.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAGAACAGTGAAAGAGAATCCATGGTGAAGGTGAAGGTGAAGGTGAATGAGGATCAGTGTTCAATAGCTGAAAAGAAAGTAATCTACAGAGGATGGAAAGCCATGCCATTTGTCATAGGAAATGAAACCTTTGAGAAGCTAGGAGCCATTGGCACCTTATCCAACCTCTTGGTCTATCTCACTAAAGAGTTCAACATGAGCAGCATTAGAGCTAATACTATACTCAGCATCTTCAATGGCCCCACCAATTTTGCTACTTTGATTGGAGCTTTTGTATCCGACACATACTGGGGTCGTTTCAAGACCATTGCTTTTGCTTCAGTCGCTTCCTTAATGGGGCTGATCTTGATAGACTTCACTGCAATCTTTGGAAACCTCCATCCTCCCTCTTGCAGCGAACAAGACCGCAGCAGCAATAAGTGCATAGGCCCAACAGGTGGCCAAGTGGCATTTTTGGCAGCCGGTCTGGGACTACTAATAGTAGGAGCAGCTGGGATCAGACCATGTAACTTTGCATTTGGTGCAGACCAGTTCAACCCCAATACTGAATCTGGAAAGAAAGGAGTTAACAGCTTCTTCAATTGGTACTTCTTCACCTTCACTGTTGCACAGATGTTGTCCTTGACAGTCATTATTTATGTTCAGTCAAATGTTAGCTGGTCTCTGGGGTTTGGCATTCTAGCCATTCTGATGTTGATGTCATGTGCACTCTTCCTCGTGGGTTCAAAATTGTATGTCAAAGTGAAAGCCAATGGTAGTCCAATGACAAGTGTGGCACAGGTCCTAGTGGTTGCTTTTAAGAAAAGGCATTTGAAGCAACCAGAGGAACCGTGGCTCTCCCTCTTTGTTTATTTGCCTCCCAATTCAATCAACTCAAAGCTTCCTTACACACATCAATTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009506 GO:0009628 GO:0010232 GO:0010233 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015103 GO:0015112 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015698 GO:0015706 GO:0015711 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0032501 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072348 GO:0080167 GO:0090408 GO:0090448 GO:0090449 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1901264 GO:1901349 GO:1901505 GO:1901682 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

303

Amino Acids

33.24

Weight (kDa)

9.4

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	5 - 349	7.5e-06	Major Facilitator Superfamily
PTR2	PF00854	35 - 360	8.1e-55	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18880 AT3G47960 AT5G62680
fragaria_vesca	FvH4_5g15612 FvH4_5g15612 FvH4_5g15612 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15670 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671
malus_domestica	MD06G1186500.v1.1 MD06G1186600.v1.1 MD06G1186700.v1.1 MD14G1192700.v1.1 MD14G1192800.v1.1 MD14G1193100.v1.1
prunus_persica	Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185200_v2.0.a1
pyrus_communis	pycom06g16580 pycom14g16040
rosa_chinensis	RchiOBHm_Chr7g0180421 RchiOBHm_Chr7g0180441
rosa_laevigata	RLG00000005265 RLG00000005267
rosa_multiflora	Rmu_sc0003322.1_g000002 Rmu_sc0003526.1_g000001 Rmu_sc0003526.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272870 Rroxscaffold_3G00272900
rosa_rugosa	Rorug06G0433000
rosa_samantha	Rh7AG033600 Rh7AG033700 Rh7BG033600 Rh7BG033700 Rh7CG035500 Rh7CG035600 Rh7DG034000 Rh7DG034200
rosa_wichuraiana	Rw7G002810 Rw7G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	440
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	2 cut(s)	63, 506
AcoI	YGGCCR	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	2 cut(s)	339, 440
AgsI	TTSAA	9 cut(s)	66, 196, 238, 304, 538, 583, 729, 817, 870
AluBI	AGCT	8 cut(s)	71, 142, 215, 272, 494, 576, 660, 883
AluI	AGCT	8 cut(s)	71, 142, 215, 272, 494, 576, 660, 883
Alw21I	GWGCWC	1 cut(s)	712
Alw26I	GTCTC	1 cut(s)	669
Alw44I	GTGCAC	1 cut(s)	708
AlwI	GGATC	2 cut(s)	63, 506
AoxI	GGCC	3 cut(s)	241, 430, 442
ApaLI	GTGCAC	1 cut(s)	708
ApeKI	GCWGC	6 cut(s)	204, 396, 411, 414, 461, 491
AspS9I	GGNCC	3 cut(s)	242, 431, 784
AsuHPI	GGTGA	5 cut(s)	40, 46, 52, 58, 589
AvaII	GGWCC	1 cut(s)	784
BaeGI	GKGCMC	1 cut(s)	712
BalI	TGGCCA	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	155
BauI	CACGAG	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	712
BbvI	GCAGC	6 cut(s)	216, 408, 423, 426, 473, 503
BccI	CCATC	2 cut(s)	90, 390
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	669
BfaI	CTAG	3 cut(s)	143, 683, 788
BfmI	CTRYAG	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	6 cut(s)	205, 397, 412, 415, 462, 492
BlsI	GCNGC	6 cut(s)	206, 398, 413, 416, 463, 493
Bme18I	GGWCC	1 cut(s)	784
BmgT120I	GGNCC	3 cut(s)	242, 431, 784
BmiI	GGNNCC	4 cut(s)	148, 157, 244, 831
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	24, 833
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 440
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	2 cut(s)	296, 532
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	24, 833
BseGI	GGATG	2 cut(s)	101, 382
BseLI	CCNNNNNNNGG	2 cut(s)	339, 440
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	2 cut(s)	296, 532
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	6 cut(s)	216, 408, 423, 426, 473, 503
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	546
BshFI	GGCC	3 cut(s)	243, 432, 444
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	712
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	339, 440
BsmAI	GTCTC	1 cut(s)	669
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	3 cut(s)	243, 432, 444
Bso31I	GGTCTC	1 cut(s)	669
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp143I	GATC	3 cut(s)	55, 345, 498
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	3 cut(s)	243, 432, 444
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	4 cut(s)	148, 157, 244, 831
BspPI	GGATC	2 cut(s)	63, 506
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	669
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	296, 532
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	2 cut(s)	24, 833
BssMI	GATC	3 cut(s)	55, 345, 498
BssSI	CACGAG	1 cut(s)	719
BssT1I	CCWWGG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	719
Bst4CI	ACNGT	4 cut(s)	11, 607, 631, 834
Bst6I	CTCTTC	1 cut(s)	719
BstAPI	GCANNNNNTGC	2 cut(s)	423, 524
BstDEI	CTNAG	1 cut(s)	227
BstDSI	CCRYGG	2 cut(s)	24, 833
BstF5I	GGATG	2 cut(s)	101, 382
BstKTI	GATC	3 cut(s)	58, 348, 501
BstMAI	GTCTC	1 cut(s)	669
BstMBI	GATC	3 cut(s)	55, 345, 498
BstMWI	GCNNNNNNNGC	5 cut(s)	326, 423, 458, 524, 817
BstSFI	CTRYAG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	6 cut(s)	216, 408, 423, 426, 473, 503
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	243, 432, 444
BtgI	CCRYGG	2 cut(s)	24, 833
BtsCI	GGATG	2 cut(s)	101, 382
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	4 cut(s)	16, 65, 360, 603
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	3 cut(s)	242, 431, 784
Csp6I	GTAC	1 cut(s)	589
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	5 cut(s)	25, 106, 199, 507, 705
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	3 cut(s)	57, 347, 500
DpnII	GATC	3 cut(s)	55, 345, 498
EaeI	YGGCCR	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	784
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	5 cut(s)	28, 109, 202, 510, 708
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	5 cut(s)	24, 105, 198, 506, 704
Fnu4HI	GCNGC	6 cut(s)	205, 397, 412, 415, 462, 492
FokI	GGATG	2 cut(s)	108, 369
Fsp4HI	GCNGC	6 cut(s)	205, 397, 412, 415, 462, 492
FspBI	CTAG	3 cut(s)	143, 683, 788
GluI	GCNGC	6 cut(s)	205, 397, 412, 415, 462, 492
GsaI	CCCAGC	1 cut(s)	498
HaeIII	GGCC	3 cut(s)	243, 432, 444
HapII	CCGG	1 cut(s)	465
Hin1II	CATG	5 cut(s)	28, 109, 202, 510, 708
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	2 cut(s)	20, 551
HpaI	GTTAAC	1 cut(s)	571
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	5 cut(s)	40, 46, 52, 58, 589
Hpy166II	GTNNAC	2 cut(s)	571, 710
Hpy188I	TCNGA	3 cut(s)	283, 503, 693
Hpy188III	TCNNGA	3 cut(s)	304, 349, 555
Hpy8I	GTNNAC	2 cut(s)	571, 710
HpyAV	CCTTC	4 cut(s)	25, 31, 37, 610
HpyCH4III	ACNGT	4 cut(s)	11, 607, 631, 834
HpyCH4V	TGCA	7 cut(s)	365, 396, 426, 518, 527, 611, 710
HpyF10VI	GCNNNNNNNGC	5 cut(s)	326, 423, 458, 524, 817
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	5 cut(s)	28, 109, 202, 510, 708
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	55, 345, 498
LmnI	GCTCC	3 cut(s)	146, 269, 488
Lsp1109I	GCAGC	6 cut(s)	216, 408, 423, 426, 473, 503
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	3 cut(s)	143, 683, 788
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	3 cut(s)	57, 347, 500
MboI	GATC	3 cut(s)	55, 345, 498
MboII	GAAGA	4 cut(s)	226, 571, 586, 706
MfeI	CAATTG	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	712
MlsI	TGGCCA	1 cut(s)	444
MluCI	AATT	5 cut(s)	250, 583, 731, 865, 899
MluNI	TGGCCA	1 cut(s)	444
MmeI	TCCRAC	2 cut(s)	189, 306
Mox20I	TGGCCA	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	444
MseI	TTAA	3 cut(s)	335, 570, 801
MslI	CAYNNNNRTG	1 cut(s)	692
Msp20I	TGGCCA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	465
MunI	CAATTG	1 cut(s)	583
Mva1269I	GAATGC	1 cut(s)	678
MwoI	GCNNNNNNNGC	5 cut(s)	326, 423, 458, 524, 817
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	55, 345, 498
NlaIII	CATG	5 cut(s)	28, 109, 202, 510, 708
NlaIV	GGNNCC	4 cut(s)	148, 157, 244, 831
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	20, 551
PflMI	CCANNNNNTGG	1 cut(s)	440
PkrI	GCNGC	6 cut(s)	206, 398, 413, 416, 463, 493
PpuMI	RGGWCCY	1 cut(s)	784
Psp5II	RGGWCCY	1 cut(s)	784
PspFI	CCCAGC	1 cut(s)	494
PspN4I	GGNNCC	4 cut(s)	148, 157, 244, 831
PspPI	GGNCC	3 cut(s)	242, 431, 784
PspPPI	RGGWCCY	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
RseI	CAYNNNNRTG	1 cut(s)	692
SaqAI	TTAA	3 cut(s)	335, 570, 801
SatI	GCNGC	6 cut(s)	205, 397, 412, 415, 462, 492
Sau3AI	GATC	3 cut(s)	55, 345, 498
Sau96I	GGNCC	3 cut(s)	242, 431, 784
SduI	GDGCHC	1 cut(s)	712
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	784
SmiMI	CAYNNNNRTG	1 cut(s)	692
Sse9I	AATT	5 cut(s)	250, 583, 731, 865, 899
SsiI	CCGC	1 cut(s)	409
SspMI	CTAG	3 cut(s)	143, 683, 788
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	11, 607, 631, 834
TasI	AATT	5 cut(s)	250, 583, 731, 865, 899
TfiI	GAWTC	2 cut(s)	20, 551
Tru1I	TTAA	3 cut(s)	335, 570, 801
Tru9I	TTAA	3 cut(s)	335, 570, 801
TscAI	CASTG	4 cut(s)	16, 65, 367, 610
TseI	GCWGC	6 cut(s)	204, 396, 411, 414, 461, 491
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	4 cut(s)	16, 65, 367, 610
Van91I	CCANNNNNTGG	1 cut(s)	440
VneI	GTGCAC	1 cut(s)	708
VpaK11BI	GGWCC	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	831
XspI	CTAG	3 cut(s)	143, 683, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.