Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001711

Physical Location & Seq

Genomic Coordinates Reverse (-)

28368072 .. 28369472

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1192800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGAGCAATCATGGAAAACAATGAGAGAGATAGCGTGGAGAAGAATAAGAGAGGTTCTACAGGTGAAGAACCAATTATATACAGAGGATGGAAAGCAATGCCATTTGTCATAGGAAATGAAACAGTTGAGATGCTAGGAGCCATTGGGACCTTGGCCAACCTCTTGGTCTATCATACTAGTGTATTCAACCTGAATAGAATTACAGCTGCAACTCTTATTACTATCTTCAGTGGCACCAACGTTGCAACCTTGCTCGGAGCTTTCGTTACCGACACTTATTTCGGTCGTTACAAGACGTTGGGATTTTCGTCGATCGTTTCTTTTATGGGACTGCTGCTGATAGATTTTACTGCAGTATTCAAGAACTTGCATCCTCCTCAGTGCAAACGAGAAGAGAGAGGAACATGTAAAGGACCAACAGTTGGTCAAATGGCATTTTTACTAACTGGTTTTGGGATGCTAACAGTAGGAGCTGCAGGCATCAGGCCATGTAACTTGGCATTTGGGGCAGACCAATTCGACCCGAAAACGGAGTCCGGAAAACGAGGAATCAACAGCTTGTATATGTCCAGTCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009506 GO:0009628 GO:0010232 GO:0010233 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015103 GO:0015112 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015698 GO:0015706 GO:0015711 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0032501 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072348 GO:0080167 GO:0090408 GO:0090448 GO:0090449 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1901264 GO:1901349 GO:1901505 GO:1901682 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

195

Amino Acids

21.18

Weight (kDa)

9.05

Isoelectric Point (pI)

22.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	98 - 192	8e-09	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18880 AT3G47960 AT5G62680
fragaria_vesca	FvH4_5g15612 FvH4_5g15612 FvH4_5g15612 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15620 FvH4_5g15670 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671 FvH4_5g15671
malus_domestica	MD06G1186500.v1.1 MD06G1186600.v1.1 MD06G1186700.v1.1 MD14G1192700.v1.1 MD14G1192800.v1.1 MD14G1193100.v1.1
prunus_persica	Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185100_v2.0.a1 Prupe.5G185200_v2.0.a1
pyrus_communis	pycom06g16580 pycom14g16040
rosa_chinensis	RchiOBHm_Chr7g0180421 RchiOBHm_Chr7g0180441
rosa_laevigata	RLG00000005265 RLG00000005267
rosa_multiflora	Rmu_sc0003322.1_g000002 Rmu_sc0003526.1_g000001 Rmu_sc0003526.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272870 Rroxscaffold_3G00272900
rosa_rugosa	Rorug06G0433000
rosa_samantha	Rh7AG033600 Rh7AG033700 Rh7BG033600 Rh7BG033700 Rh7CG035500 Rh7CG035600 Rh7DG034000 Rh7DG034200
rosa_wichuraiana	Rw7G002810 Rw7G002820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	425
AccIII	TCCGGA	1 cut(s)	539
AclI	AACGTT	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	214
AfiI	CCNNNNNNNGG	2 cut(s)	425, 532
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	190, 364
AhlI	ACTAGT	1 cut(s)	179
AluBI	AGCT	4 cut(s)	209, 263, 476, 561
AluI	AGCT	4 cut(s)	209, 263, 476, 561
Aor13HI	TCCGGA	1 cut(s)	539
AoxI	GGCC	2 cut(s)	156, 488
ApeKI	GCWGC	3 cut(s)	209, 337, 476
ArsI	GACNNNNNNTTYG	4 cut(s)	266, 298, 521, 553
AspS9I	GGNCC	2 cut(s)	150, 416
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	150, 416
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	236
BbvI	GCAGC	3 cut(s)	196, 324, 463
BccI	CCATC	1 cut(s)	84
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	137, 180
BfmI	CTRYAG	3 cut(s)	60, 354, 477
BisI	GCNGC	3 cut(s)	210, 338, 477
BlsI	GCNGC	3 cut(s)	211, 339, 478
Bme18I	GGWCC	2 cut(s)	150, 416
BmgT120I	GGNCC	2 cut(s)	150, 416
BmiI	GGNNCC	3 cut(s)	142, 151, 238
BmsI	GCATC	4 cut(s)	123, 382, 450, 492
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	539
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	425, 532
Bse1I	ACTGG	2 cut(s)	454, 573
Bse3DI	GCAATG	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	539
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	3 cut(s)	95, 373, 465
BseLI	CCNNNNNNNGG	2 cut(s)	425, 532
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	454, 573
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	3 cut(s)	196, 324, 463
Bsh1285I	CGRYCG	2 cut(s)	289, 318
BshFI	GGCC	2 cut(s)	158, 490
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	2 cut(s)	289, 318
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	2 cut(s)	163, 345
BslI	CCNNNNNNNGG	2 cut(s)	425, 532
BsmFI	GGGAC	2 cut(s)	163, 345
BsnI	GGCC	2 cut(s)	158, 490
Bsp13I	TCCGGA	1 cut(s)	539
Bsp143I	GATC	1 cut(s)	315
BspANI	GGCC	2 cut(s)	158, 490
BspCNI	CTCAG	1 cut(s)	394
BspEI	TCCGGA	1 cut(s)	539
BspLI	GGNNCC	3 cut(s)	142, 151, 238
BspMAI	CTGCAG	2 cut(s)	358, 481
BspT107I	GGYRCC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	2 cut(s)	454, 573
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	127, 424, 469
Bst6I	CTCTTC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	3 cut(s)	95, 373, 465
BstKTI	GATC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	315
BstMCI	CGRYCG	2 cut(s)	289, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	411
BstSFI	CTRYAG	3 cut(s)	60, 354, 477
BstV1I	GCAGC	3 cut(s)	196, 324, 463
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	158, 490
BtsCI	GGATG	3 cut(s)	95, 373, 465
BtsIMutI	CAGTG	2 cut(s)	238, 389
Cac8I	GCNNGC	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	150, 416
CviAII	CATG	3 cut(s)	13, 408, 492
CviJI	RGCY	7 cut(s)	143, 158, 209, 263, 476, 490, 561
CviKI_1	RGCY	7 cut(s)	143, 158, 209, 263, 476, 490, 561
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	150, 416
Eco57I	CTGAAG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	3 cut(s)	16, 411, 495
FaqI	GGGAC	2 cut(s)	163, 345
FatI	CATG	3 cut(s)	12, 407, 491
Fnu4HI	GCNGC	3 cut(s)	210, 338, 477
FokI	GGATG	3 cut(s)	102, 360, 472
Fsp4HI	GCNGC	3 cut(s)	210, 338, 477
FspBI	CTAG	2 cut(s)	137, 180
GluI	GCNGC	3 cut(s)	210, 338, 477
HaeIII	GGCC	2 cut(s)	158, 490
HapII	CCGG	1 cut(s)	540
Hin1II	CATG	3 cut(s)	16, 411, 495
HinfI	GANTC	2 cut(s)	536, 552
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	2 cut(s)	364, 540
Hpy99I	CGWCG	1 cut(s)	316
HpyCH4III	ACNGT	3 cut(s)	127, 424, 469
HpyCH4IV	ACGT	2 cut(s)	243, 299
HpyCH4V	TGCA	6 cut(s)	212, 248, 356, 373, 387, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	2 cut(s)	243, 299
Hsp92II	CATG	3 cut(s)	16, 411, 495
Kpn2I	TCCGGA	1 cut(s)	539
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	3 cut(s)	140, 260, 473
LpnPI	CCDG	6 cut(s)	48, 206, 435, 465, 472, 553
Lsp1109I	GCAGC	3 cut(s)	196, 324, 463
LweI	GCATC	4 cut(s)	123, 382, 450, 492
MaeI	CTAG	2 cut(s)	137, 180
MaeII	ACGT	2 cut(s)	243, 299
MaeIII	GTNAC	3 cut(s)	268, 290, 494
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	4 cut(s)	55, 80, 220, 407
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	3 cut(s)	75, 201, 518
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	545
MnlI	CCTC	7 cut(s)	47, 80, 173, 387, 390, 395, 542
Mox20I	TGGCCA	1 cut(s)	158
MroI	TCCGGA	1 cut(s)	539
MscI	TGGCCA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	3 cut(s)	16, 411, 495
NlaIV	GGNNCC	3 cut(s)	142, 151, 238
NspI	RCATGY	1 cut(s)	411
PciI	ACATGT	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	552
PflMI	CCANNNNNTGG	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	211, 339, 478
Ple19I	CGATCG	1 cut(s)	318
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PpuMI	RGGWCCY	1 cut(s)	150
PscI	ACATGT	1 cut(s)	407
Psp1406I	AACGTT	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	142, 151, 238
PspPI	GGNCC	2 cut(s)	150, 416
PspPPI	RGGWCCY	1 cut(s)	150
PstI	CTGCAG	2 cut(s)	358, 481
PvuI	CGATCG	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	180
SatI	GCNGC	3 cut(s)	210, 338, 477
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	2 cut(s)	150, 416
SchI	GAGTC	1 cut(s)	545
SfaNI	GCATC	4 cut(s)	123, 382, 450, 492
SfcI	CTRYAG	3 cut(s)	60, 354, 477
SinI	GGWCC	2 cut(s)	150, 416
SmiMI	CAYNNNNRTG	1 cut(s)	180
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	3 cut(s)	75, 201, 518
SspMI	CTAG	2 cut(s)	137, 180
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	127, 424, 469
TaiI	ACGT	2 cut(s)	246, 302
TaqI	TCGA	2 cut(s)	314, 522
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	3 cut(s)	75, 201, 518
TfiI	GAWTC	1 cut(s)	552
TscAI	CASTG	2 cut(s)	238, 389
TseI	GCWGC	3 cut(s)	209, 337, 476
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	2 cut(s)	238, 389
Van91I	CCANNNNNTGG	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	150, 416
XceI	RCATGY	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XspI	CTAG	2 cut(s)	137, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.