MD06G1186500.v1.1

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
32427308 .. 32429277
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1186500.v1.1.491

Sequence Viewer

Length: 1299 bp
ATGCTAATAGTAGGAGCTGCAGGCATCAGGCCATGTAACCTGGTATTTGGGGCAGACCAATTCAACCAGAAAACGGAGTCGGGAAAACGAGGAGTCAACAGCTTCTTCAACTGGTATATGTTCACCTTCACTTTCGCACAGATGATAGCATTGACCCTCATCGTCTACATCCAGTCAAATGTAAGTTGGAGTCTAGGGTTTGGCATTCCAGCCATTTTGATGTTGATATCATGTGTTCTCTTCTTCATCGGATCAAAATTGTACGTGAAAGTGAAAGCCTCTGGTAGTCCGATGAATAGTGTAGCACAGGTCGTGGTGGTTTCCATTGCGAAAAGGCATTTGAAGCTTAAAGAGCCAGAGCGGCCATGGCTCTCCATGTTTGTTTATTTGCCTCCCGATTCTATCAACTCCAACCTTCCTTATACAGATCAATTCAGATGCCTTGACAAAGCAGCAATTCTTACGCCGGAAGACAAAATCAATCCGGATGGTTCAGCTGCTGATCCTTGGAGACTTTGCAGCATGCAACAAGTGGAAGAAGTGAAATGCTTGCTGAGAGTTTTGCCAATATGGGCAGCAGCCCTCATATACCATATTGCCATAGTCCAGCAGCAAACCTATGTTGTCTTCCAAGCCCTTCAATCCAATCGACGCCTTGGAAAAACAAGCTTCCAAATCCCGGCTGCATCCTACACAATCTTCCTGATGCTGGGCATGACCATATGGATACCAATCTACGACCGCCTTCTTGTCCCGTTCCTCCAAAGGCTCACGGGAAAAGAAGGCGGCATCACATTGTTGCAAAGAATAGGAATTGGCATTTTTCTCTCTGTGATCACGATGCTAGTATCTGCATTCGTAGAACAACACCGAAGGACTATAGCGCTAACAAAACCAATTCCAGGAATGTCTGGCTTTTGGCTGGTCCCTCAGCTCACACTAGCCGGGCTTGCTGAAGCGTTCGCTGCCGTTGGCCAAATCGAATTCTACTACAAGCAGTTCCCGGAAAACATGAGAAGCATTGGAGGGTCTCTCTTCTTTTGTGGAATGGCAGGTTCTAGTTACTTGAGTAGTGCGTTAATCGCCATAGTTCACCGGACTACTGAGGGGGCTGCAACGACTGGAAACTGGCTGCCGGAAGATCTCAACAAGGGGAGGCTGGATTACTTCTATTATCTTATTGCTGCTCTAGGAGTCATTAATTTGGGATACTTTTTAATGTGTTCAAAGTGGTACAATTACAAAGGTGGTGGGGACAACAATGCCCTTGAAGTTGAAGTAGGTGCAGAAATCACATGA

Protein Analysis

433

Amino Acids

48.04

Weight (kDa)

9.02

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 3 - 371 7.8e-72 POT family
MFS_1 PF07690 34 - 353 1.9e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1043
AccBSI CCGCTC 1 cut(s) 361
AccI GTMKAC 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 3 cut(s) 361, 742, 786
AclWI GGATC 2 cut(s) 259, 497
AcoI YGGCCR 2 cut(s) 362, 973
AcsI RAATTY 1 cut(s) 983
AcuI CTGAAG 1 cut(s) 975
AcyI GRCGYC 1 cut(s) 652
AfaI GTAC 2 cut(s) 263, 1235
AfeI AGCGCT 1 cut(s) 885
AfiI CCNNNNNNNGG 4 cut(s) 73, 679, 709, 902
AgsI TTSAA 7 cut(s) 64, 109, 343, 641, 1227, 1271, 1277
AjnI CCWGG 2 cut(s) 39, 901
AluBI AGCT 6 cut(s) 17, 102, 346, 497, 669, 934
AluI AGCT 6 cut(s) 17, 102, 346, 497, 669, 934
Alw26I GTCTC 2 cut(s) 505, 1035
AlwI GGATC 2 cut(s) 259, 497
AlwNI CAGNNNCTG 1 cut(s) 500
Aor13HI TCCGGA 1 cut(s) 484
Aor51HI AGCGCT 1 cut(s) 885
AoxI GGCC 3 cut(s) 29, 362, 973
ApoI RAATTY 1 cut(s) 983
AseI ATTAAT 1 cut(s) 1200
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 1 cut(s) 925
AsuC2I CCSGG 3 cut(s) 680, 946, 1004
AsuHPI GGTGA 2 cut(s) 115, 1085
AvaII GGWCC 1 cut(s) 925
BalI TGGCCA 1 cut(s) 975
BbsI GAAGAC 2 cut(s) 477, 619
BbvCI CCTCAGC 1 cut(s) 930
BccI CCATC 1 cut(s) 482
BceAI ACGGC 1 cut(s) 953
BciT130I CCWGG 2 cut(s) 41, 903
BciVI GTATCC 2 cut(s) 720, 1202
BclI TGATCA 1 cut(s) 834
BcnI CCSGG 3 cut(s) 680, 946, 1004
BcoDI GTCTC 2 cut(s) 505, 1035
BfaI CTAG 5 cut(s) 194, 845, 941, 1059, 1190
BfmI CTRYAG 2 cut(s) 18, 879
BfoI RGCGCY 1 cut(s) 887
BfuAI ACCTGC 1 cut(s) 1043
BfuI GTATCC 2 cut(s) 720, 1202
BglI GCCNNNNNGGC 1 cut(s) 361
BglII AGATCT 1 cut(s) 1141
Bme1390I CCNGG 5 cut(s) 41, 680, 903, 946, 1004
Bme18I GGWCC 1 cut(s) 925
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 1 cut(s) 927
BmrFI CCNGG 5 cut(s) 41, 680, 903, 946, 1004
BmsI GCATC 6 cut(s) 33, 428, 695, 696, 798, 831
BpiI GAAGAC 2 cut(s) 477, 619
BplI GAGNNNNNCTC 2 cut(s) 1017, 1049
Bpu10I CCTNAGC 1 cut(s) 930
BpuEI CTTGAG 1 cut(s) 1087
BpuMI CCSGG 3 cut(s) 680, 946, 1004
BsaAI YACGTR 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 731
BsaHI GRCGYC 1 cut(s) 652
BsaI GGTCTC 1 cut(s) 1035
BsaJI CCNNGG 3 cut(s) 365, 506, 655
BsaWI WCCGGW 2 cut(s) 484, 1095
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 679, 709, 902
Bse1I ACTGG 4 cut(s) 116, 172, 1126, 1133
Bse3DI GCAATG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 731
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 2 cut(s) 41, 903
BseDI CCNNGG 3 cut(s) 365, 506, 655
BseGI GGATG 3 cut(s) 168, 493, 686
BseJI GATNNNNATC 1 cut(s) 731
BseLI CCNNNNNNNGG 4 cut(s) 73, 679, 709, 902
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 3 cut(s) 545, 944, 1095
BseNI ACTGG 4 cut(s) 116, 172, 1126, 1133
BseRI GAGGAG 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 709
Bsh1285I CGRYCG 1 cut(s) 742
BshFI GGCC 3 cut(s) 31, 364, 975
BsiEI CGRYCG 1 cut(s) 742
BsiSI CCGG 7 cut(s) 467, 485, 680, 945, 1004, 1096, 1136
BslFI GGGAC 3 cut(s) 737, 911, 1268
BslI CCNNNNNNNGG 4 cut(s) 73, 679, 709, 902
BsmAI GTCTC 2 cut(s) 505, 1035
BsmFI GGGAC 3 cut(s) 737, 911, 1268
BsmI GAATGC 2 cut(s) 204, 854
BsnI GGCC 3 cut(s) 31, 364, 975
Bso31I GGTCTC 1 cut(s) 1035
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 5 cut(s) 251, 427, 502, 834, 1141
Bsp19I CCATGG 1 cut(s) 365
BspACI CCGC 3 cut(s) 361, 742, 786
BspANI GGCC 3 cut(s) 31, 364, 975
BspCNI CTCAG 3 cut(s) 546, 943, 1096
BspEI TCCGGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 927
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 1043
BspPI GGATC 2 cut(s) 259, 497
BspTNI GGTCTC 1 cut(s) 1035
BsrBI CCGCTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 4 cut(s) 116, 172, 1126, 1133
BssECI CCNNGG 3 cut(s) 365, 506, 655
BssMI GATC 5 cut(s) 251, 427, 502, 834, 1141
BssNI GRCGYC 1 cut(s) 652
BssT1I CCWWGG 3 cut(s) 365, 506, 655
Bst2UI CCWGG 2 cut(s) 41, 903
Bst6I CTCTTC 2 cut(s) 245, 1040
BstACI GRCGYC 1 cut(s) 652
BstBAI YACGTR 1 cut(s) 265
BstC8I GCNNGC 4 cut(s) 22, 524, 551, 951
BstDEI CTNAG 3 cut(s) 554, 930, 1104
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 3 cut(s) 168, 493, 686
BstH2I RGCGCY 1 cut(s) 887
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 5 cut(s) 254, 430, 505, 837, 1144
BstMAI GTCTC 2 cut(s) 505, 1035
BstMBI GATC 5 cut(s) 251, 427, 502, 834, 1141
BstMCI CGRYCG 1 cut(s) 742
BstMWI GCNNNNNNNGC 7 cut(s) 343, 352, 361, 367, 950, 965, 1082
BstNI CCWGG 2 cut(s) 41, 903
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 5 cut(s) 39, 678, 901, 944, 1002
BstSFI CTRYAG 2 cut(s) 18, 879
BstV2I GAAGAC 2 cut(s) 477, 619
BstX2I RGATCY 1 cut(s) 1141
BstYI RGATCY 1 cut(s) 1141
BsuI GTATCC 2 cut(s) 720, 1202
BsuRI GGCC 3 cut(s) 31, 364, 975
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 3 cut(s) 168, 493, 686
BveI ACCTGC 1 cut(s) 1043
Cac8I GCNNGC 4 cut(s) 22, 524, 551, 951
CaiI CAGNNNCTG 1 cut(s) 500
CfoI GCGC 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 925
CseI GACGC 1 cut(s) 660
CsiI ACCWGGT 1 cut(s) 39
Csp6I GTAC 2 cut(s) 262, 1234
CspCI CAANNNNNGTGG 2 cut(s) 1231, 1266
CviAII CATG 8 cut(s) 33, 231, 366, 376, 523, 715, 1012, 1296
CviQI GTAC 2 cut(s) 262, 1234
DdeI CTNAG 3 cut(s) 554, 930, 1104
DpnI GATC 5 cut(s) 253, 429, 504, 836, 1143
DpnII GATC 5 cut(s) 251, 427, 502, 834, 1141
EaeI YGGCCR 2 cut(s) 362, 973
Eam1104I CTCTTC 2 cut(s) 245, 1040
EarI CTCTTC 2 cut(s) 245, 1040
Eco130I CCWWGG 3 cut(s) 365, 506, 655
Eco31I GGTCTC 1 cut(s) 1035
Eco32I GATATC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 925
Eco47III AGCGCT 1 cut(s) 885
Eco57I CTGAAG 1 cut(s) 975
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 2 cut(s) 39, 901
EcoRV GATATC 1 cut(s) 228
EcoT14I CCWWGG 3 cut(s) 365, 506, 655
ErhI CCWWGG 3 cut(s) 365, 506, 655
FaeI CATG 8 cut(s) 36, 234, 369, 379, 526, 718, 1015, 1299
FaqI GGGAC 3 cut(s) 737, 911, 1268
FatI CATG 8 cut(s) 32, 230, 365, 375, 522, 714, 1011, 1295
FauNDI CATATG 1 cut(s) 722
FbaI TGATCA 1 cut(s) 834
FblI GTMKAC 1 cut(s) 165
FokI GGATG 3 cut(s) 155, 500, 673
FspBI CTAG 5 cut(s) 194, 845, 941, 1059, 1190
GlaI GCGC 1 cut(s) 885
GsaI CCCAGC 1 cut(s) 713
HaeII RGCGCY 1 cut(s) 887
HaeIII GGCC 3 cut(s) 31, 364, 975
HapII CCGG 7 cut(s) 467, 485, 680, 945, 1004, 1096, 1136
HgaI GACGC 1 cut(s) 660
HhaI GCGC 1 cut(s) 886
Hin1I GRCGYC 1 cut(s) 652
Hin1II CATG 8 cut(s) 36, 234, 369, 379, 526, 718, 1015, 1299
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 2 cut(s) 344, 667
HinfI GANTC 5 cut(s) 77, 93, 190, 398, 1194
HpaII CCGG 7 cut(s) 467, 485, 680, 945, 1004, 1096, 1136
HphI GGTGA 2 cut(s) 115, 1085
Hpy166II GTNNAC 4 cut(s) 97, 123, 166, 1093
Hpy188I TCNGA 3 cut(s) 251, 291, 437
Hpy188III TCNNGA 5 cut(s) 81, 395, 485, 703, 838
Hpy8I GTNNAC 4 cut(s) 97, 123, 166, 1093
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 6 cut(s) 136, 425, 647, 755, 776, 867
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 8 cut(s) 20, 519, 526, 686, 802, 854, 1115, 1286
HpyF10VI GCNNNNNNNGC 7 cut(s) 343, 352, 361, 367, 950, 965, 1082
HpyF3I CTNAG 3 cut(s) 554, 930, 1104
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 652
Hsp92II CATG 8 cut(s) 36, 234, 369, 379, 526, 718, 1015, 1299
HspAI GCGC 1 cut(s) 884
Kpn2I TCCGGA 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 5 cut(s) 251, 427, 502, 834, 1141
LmnI GCTCC 1 cut(s) 14
LweI GCATC 6 cut(s) 33, 428, 695, 696, 798, 831
MabI ACCWGGT 1 cut(s) 39
MaeI CTAG 5 cut(s) 194, 845, 941, 1059, 1190
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 35, 1061
MalI GATC 5 cut(s) 253, 429, 504, 836, 1143
MbiI CCGCTC 1 cut(s) 361
MboI GATC 5 cut(s) 251, 427, 502, 834, 1141
MboII GAAGA 9 cut(s) 97, 232, 235, 482, 548, 619, 691, 1027, 1151
MflI RGATCY 1 cut(s) 1141
MlsI TGGCCA 1 cut(s) 975
MluCI AATT 9 cut(s) 59, 257, 431, 456, 813, 897, 983, 1201, 1237
MluNI TGGCCA 1 cut(s) 975
MlyI GAGTC 4 cut(s) 86, 102, 199, 1203
MmeI TCCRAC 2 cut(s) 167, 435
Mox20I TGGCCA 1 cut(s) 975
MroI TCCGGA 1 cut(s) 484
MscI TGGCCA 1 cut(s) 975
MseI TTAA 4 cut(s) 348, 1079, 1200, 1217
MslI CAYNNNNRTG 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 975
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 7 cut(s) 467, 485, 680, 945, 1004, 1096, 1136
MspR9I CCNGG 5 cut(s) 41, 680, 903, 946, 1004
Mva1269I GAATGC 2 cut(s) 204, 854
MvaI CCWGG 2 cut(s) 41, 903
MwoI GCNNNNNNNGC 7 cut(s) 343, 352, 361, 367, 950, 965, 1082
NciI CCSGG 3 cut(s) 680, 946, 1004
NcoI CCATGG 1 cut(s) 365
NdeI CATATG 1 cut(s) 722
NdeII GATC 5 cut(s) 251, 427, 502, 834, 1141
NlaIII CATG 8 cut(s) 36, 234, 369, 379, 526, 718, 1015, 1299
NlaIV GGNNCC 1 cut(s) 927
NspI RCATGY 1 cut(s) 526
PaeI GCATGC 1 cut(s) 526
PctI GAATGC 2 cut(s) 204, 854
PfeI GAWTC 1 cut(s) 398
PfoI TCCNGGA 2 cut(s) 901, 1002
PleI GAGTC 4 cut(s) 85, 101, 198, 1202
PpsI GAGTC 4 cut(s) 85, 101, 198, 1202
Ppu21I YACGTR 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 1200
Psp6I CCWGG 2 cut(s) 39, 901
PspFI CCCAGC 1 cut(s) 709
PspGI CCWGG 2 cut(s) 39, 901
PspN4I GGNNCC 1 cut(s) 927
PspPI GGNCC 1 cut(s) 925
PstI CTGCAG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 1 cut(s) 1141
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 263, 1235
RsaNI GTAC 2 cut(s) 262, 1234
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 4 cut(s) 348, 1079, 1200, 1217
Sau3AI GATC 5 cut(s) 251, 427, 502, 834, 1141
Sau96I GGNCC 1 cut(s) 925
SchI GAGTC 4 cut(s) 86, 102, 199, 1203
ScrFI CCNGG 5 cut(s) 41, 680, 903, 946, 1004
SexAI ACCWGGT 1 cut(s) 39
SfaNI GCATC 6 cut(s) 33, 428, 695, 696, 798, 831
SfcI CTRYAG 2 cut(s) 18, 879
SinI GGWCC 1 cut(s) 925
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 1066
SmoI CTYRAG 1 cut(s) 1066
SphI GCATGC 1 cut(s) 526
Sse9I AATT 9 cut(s) 59, 257, 431, 456, 813, 897, 983, 1201, 1237
SsiI CCGC 3 cut(s) 361, 742, 786
SspMI CTAG 5 cut(s) 194, 845, 941, 1059, 1190
StyD4I CCNGG 5 cut(s) 39, 678, 901, 944, 1002
StyI CCWWGG 3 cut(s) 365, 506, 655
TaiI ACGT 1 cut(s) 267
TaqI TCGA 2 cut(s) 649, 981
TasI AATT 9 cut(s) 59, 257, 431, 456, 813, 897, 983, 1201, 1237
TauI GCSGC 2 cut(s) 364, 789
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 4 cut(s) 348, 1079, 1200, 1217
Tru9I TTAA 4 cut(s) 348, 1079, 1200, 1217
TspDTI ATGAA 2 cut(s) 235, 308
TspGWI ACGGA 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 925
VspI ATTAAT 1 cut(s) 1200
XapI RAATTY 1 cut(s) 983
XceI RCATGY 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 5 cut(s) 194, 845, 941, 1059, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.