Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003229

Physical Location & Seq

Genomic Coordinates Forward (+)

8849175 .. 8852527

Gene Structure 3353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGGGACGATAGCCCTAACTGCAAGCATACACCATTTGAGACCCTCCCACGGGTGCGATGTTCAATCCGGGGATTGTCCTCAGCCCAAGACTTGGCAGTTGGCCGTACTCTTTATGGGCCTGGCTTTACTATCAATCGGGGCGGGTGGGATTCGGCCCTGCAACATTGCATTCGGTGCTGACCAATTTGACACCAGAACAGCAAAAGGAAGAGCACAACTAGAGAGCTTCTTCAACTGGTGGTACTTCTCCTTCACCATTGCTCTTGTTATAGCTCTCACCGGAGTTGTCTATATTCAGACCAACATCAGCTGGGCCATCGGGTTCGCTATCCCCACCGTCTGTCTTGCTTTCTCCATCACAATCTTCTTGCTTGGCCAACACGCCTACATTTACCTCAAGCCTCAGGGAAGTGTTTTCTCAGACGTAGCAAAAGTGATCGTAGCTGCTTGCAGGAAGTCTAGGGTTAGGGTTGCACCGGATACAGAGCCTAATTTTTATGATCCTCCTTTAGTTGATAATATTGGGTCAGATCAGAGACAAGTGATGATCAAGTACCCTCACACTAACAGGTTCAAATTCCTTGACAGAGCTGCCATCATAACAAACCCTAATCAAGAATTGGACGATCAGTATAACCCTAAAAGTGGGTGGAGACTATGTAGCCTGCAACAAGTTGAGCAACTGAAGTTTCTGGCGGCGATCTTACCTGTTTGGGTTACAGCGATAGGTACTTTCATAACCATGGACCAAACTAACACCTTTGGTGTGTTACAAGCTTTGCAGATGGACAGATCAATAGGTCCGAAGTTTCTTTTCCCACCAGGTTGGATGAACATAACCTCCATGCTCGCACTTGCTATATGGATCTTGACTTACGAGAGGATTTACCTCCCTCTAGCCAAAAAATTCAGCAGATCGTCGCAAACCGATCTTCGATTCACAATGACACAGAGAATCAATACAGGCATCGTCCTTTCGGTTGTGACAATGGTGGTGTCTGGGATCGTAGAAGAACACAGAAGGAAATCTGCATTGAAGCATGGCTTGTTTGTTTCGCCCACAAGTTTCGCATTGCTGTTGCCACAGTACTTCTTGACGGGACTGACCGAGGCATTTTCTGCTGTTGCCATAATGGAGTTCTTCACCATGCAAATGCCGGAGAGCATGAGGACTGTTGCTGGAGCAATCTTCTTCCTTAGCTTGTCGGTTTCGAACTACTTAGGCTCGTTCGTAGCCAACATGGTACACAAGGCGACTGAGGGAAAATCTCCATGGGTTGGAGGTCACGACCTTAACAAGAACAAGCTCGACTGCTACTACTACATCATTGCTGCTTTGGGGGCTGTGAATTTTGTGTACTTCAATTTGTTTGCAAGACATTATGTGTTGGTTAGTAAGAAGCCTGGTAGTGACAATGGGAAAGGAGAAGTGCAGCTAGAGAACCCGAATCCGATTGCTCGTGATAGTTCAAACGAAGAAAGCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

498

Amino Acids

55.31

Weight (kDa)

9.09

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	2 - 427	1.2e-71	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28470 AT5G28470
fragaria_vesca	FvH4_5g15610 FvH4_5g15610 FvH4_5g15610 FvH4_5g15660 FvH4_5g15660 FvH4_5g15660 FvH4_6g12851
malus_domestica	MD04G1137500.v1.1 MD06G1186800.v1.1 MD12G1152300.v1.1 MD14G1193200.v1.1
prunus_persica	Prupe.5G185300_v2.0.a1 Prupe.6G263500_v2.0.a1 Prupe.6G263500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0464881 RchiOBHm_Chr7g0180471
rosa_laevigata	RLG00000005264 RLG00000024668
rosa_multiflora	Rmu_co8023650.1_g000001 Rmu_co8294651.1_g000001 Rmu_sc0003322.1_g000004 Rmu_sc0005690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272850 Rroxscaffold_6G00415380
rosa_rugosa	Rorug03G0074400 Rorug06G0433000
rosa_samantha	Rh3BG137300 Rh3CG139900 Rh3DG138700 Rh7AG034000 Rh7BG034000 Rh7CG035800 Rh7DG034400
rosa_wichuraiana	Rw3G011220 Rw7G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	93, 1280
AciI	CCGC	2 cut(s)	143, 698
AclWI	GGATC	3 cut(s)	497, 875, 1013
AcoI	YGGCCR	2 cut(s)	102, 376
AcsI	RAATTY	3 cut(s)	578, 908, 1351
AcuI	CTGAAG	1 cut(s)	707
AfaI	GTAC	7 cut(s)	108, 245, 557, 733, 1091, 1248, 1361
AfiI	CCNNNNNNNGG	5 cut(s)	50, 51, 93, 647, 1280
AgsI	TTSAA	6 cut(s)	65, 235, 577, 1039, 1366, 1473
AjnI	CCWGG	3 cut(s)	120, 823, 1405
AloI	GAACNNNNNNTCC	2 cut(s)	827, 859
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	3 cut(s)	34, 532, 649
AlwI	GGATC	3 cut(s)	497, 875, 1013
AoxI	GGCC	5 cut(s)	102, 118, 155, 315, 376
ApeKI	GCWGC	4 cut(s)	446, 593, 1334, 1435
ApoI	RAATTY	3 cut(s)	578, 908, 1351
AspS9I	GGNCC	5 cut(s)	118, 156, 315, 748, 803
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	247, 271, 1138
AsuII	TTCGAA	1 cut(s)	1214
AvaII	GGWCC	2 cut(s)	748, 803
AxyI	CCTNAGG	1 cut(s)	405
BalI	TGGCCA	1 cut(s)	378
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	1461
Bbv12I	GWGCWC	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	4 cut(s)	433, 580, 1321, 1447
BccI	CCATC	4 cut(s)	326, 365, 605, 781
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	3 cut(s)	122, 825, 1407
BciVI	GTATCC	1 cut(s)	475
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	3 cut(s)	34, 532, 649
BfaI	CTAG	4 cut(s)	221, 462, 899, 1439
BfuI	GTATCC	1 cut(s)	475
BisI	GCNGC	5 cut(s)	447, 594, 699, 1335, 1436
BlsI	GCNGC	5 cut(s)	448, 595, 700, 1336, 1437
BmcAI	AGTACT	1 cut(s)	1091
Bme1390I	CCNGG	4 cut(s)	70, 122, 825, 1407
Bme18I	GGWCC	2 cut(s)	748, 803
BmgT120I	GGNCC	5 cut(s)	118, 156, 315, 748, 803
BmrFI	CCNGG	4 cut(s)	70, 122, 825, 1407
BmsI	GCATC	1 cut(s)	978
BpmI	CTGGAG	1 cut(s)	1203
Bpu10I	CCTNAGC	2 cut(s)	81, 1199
Bpu14I	TTCGAA	1 cut(s)	1214
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	5 cut(s)	49, 69, 744, 1110, 1274
BsaWI	WCCGGW	2 cut(s)	281, 478
BsaXI	ACNNNNNCTCC	4 cut(s)	646, 676, 827, 857
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 51, 93, 647, 1280
Bse1I	ACTGG	1 cut(s)	242
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	4 cut(s)	165, 258, 1073, 1329
BseBI	CCWGG	3 cut(s)	122, 825, 1407
BseDI	CCNNGG	5 cut(s)	49, 69, 744, 1110, 1274
BseGI	GGATG	1 cut(s)	837
BseLI	CCNNNNNNNGG	5 cut(s)	50, 51, 93, 647, 1280
BseMI	GCAATG	4 cut(s)	165, 258, 1073, 1329
BseMII	CTCAG	4 cut(s)	95, 419, 435, 1251
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	4 cut(s)	433, 580, 1321, 1447
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	1454
BshFI	GGCC	5 cut(s)	104, 120, 157, 317, 378
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	4 cut(s)	69, 282, 479, 1160
BslFI	GGGAC	2 cut(s)	19, 1116
BslI	CCNNNNNNNGG	5 cut(s)	50, 51, 93, 647, 1280
BsmAI	GTCTC	3 cut(s)	34, 532, 649
BsmFI	GGGAC	2 cut(s)	19, 1116
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	5 cut(s)	104, 120, 157, 317, 378
Bso31I	GGTCTC	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	1214
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp19I	CCATGG	2 cut(s)	744, 1274
BspACI	CCGC	2 cut(s)	143, 698
BspANI	GGCC	5 cut(s)	104, 120, 157, 317, 378
BspCNI	CTCAG	4 cut(s)	94, 418, 434, 1252
BspPI	GGATC	3 cut(s)	497, 875, 1013
BspQI	GCTCTTC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	1214
BspTNI	GGTCTC	1 cut(s)	34
BsrDI	GCAATG	4 cut(s)	165, 258, 1073, 1329
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	5 cut(s)	49, 69, 744, 1110, 1274
BssSI	CACGAG	1 cut(s)	1461
BssT1I	CCWWGG	2 cut(s)	744, 1274
Bst2BI	CACGAG	1 cut(s)	1461
Bst2UI	CCWGG	3 cut(s)	122, 825, 1407
Bst4CI	ACNGT	3 cut(s)	340, 1089, 1177
Bst6I	CTCTTC	1 cut(s)	205
BstAPI	GCANNNNNTGC	2 cut(s)	176, 1121
BstBI	TTCGAA	1 cut(s)	1214
BstC8I	GCNNGC	4 cut(s)	25, 451, 668, 852
BstDEI	CTNAG	6 cut(s)	81, 405, 421, 1199, 1222, 1260
BstDSI	CCRYGG	3 cut(s)	49, 744, 1274
BstF5I	GGATG	1 cut(s)	837
BstMAI	GTCTC	3 cut(s)	34, 532, 649
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 176, 1121, 1343
BstNI	CCWGG	3 cut(s)	122, 825, 1407
BstSCI	CCNGG	4 cut(s)	68, 120, 823, 1405
BstV1I	GCAGC	4 cut(s)	433, 580, 1321, 1447
BstX2I	RGATCY	1 cut(s)	867
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	867
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	5 cut(s)	104, 120, 157, 317, 378
BtgI	CCRYGG	3 cut(s)	49, 744, 1274
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	837
Cac8I	GCNNGC	4 cut(s)	25, 451, 668, 852
Cfr13I	GGNCC	5 cut(s)	118, 156, 315, 748, 803
CsiI	ACCWGGT	1 cut(s)	823
Csp6I	GTAC	7 cut(s)	107, 244, 556, 732, 1090, 1247, 1360
CviAII	CATG	7 cut(s)	745, 847, 1043, 1150, 1168, 1243, 1275
CviQI	GTAC	7 cut(s)	107, 244, 556, 732, 1090, 1247, 1360
DdeI	CTNAG	6 cut(s)	81, 405, 421, 1199, 1222, 1260
EaeI	YGGCCR	2 cut(s)	102, 376
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	744, 1274
Eco31I	GGTCTC	1 cut(s)	34
Eco47I	GGWCC	2 cut(s)	748, 803
Eco57I	CTGAAG	1 cut(s)	707
Eco81I	CCTNAGG	1 cut(s)	405
EcoRII	CCWGG	3 cut(s)	120, 823, 1405
EcoT14I	CCWWGG	2 cut(s)	744, 1274
ErhI	CCWWGG	2 cut(s)	744, 1274
FaeI	CATG	7 cut(s)	748, 850, 1046, 1153, 1171, 1246, 1278
FalI	AAGNNNNNCTT	3 cut(s)	1031, 1063, 1474
FaqI	GGGAC	2 cut(s)	19, 1116
FatI	CATG	7 cut(s)	744, 846, 1042, 1149, 1167, 1242, 1274
FauI	CCCGC	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	5 cut(s)	447, 594, 699, 1335, 1436
FokI	GGATG	1 cut(s)	844
Fsp4HI	GCNGC	5 cut(s)	447, 594, 699, 1335, 1436
FspBI	CTAG	4 cut(s)	221, 462, 899, 1439
GluI	GCNGC	5 cut(s)	447, 594, 699, 1335, 1436
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	1203
HaeIII	GGCC	5 cut(s)	104, 120, 157, 317, 378
HapII	CCGG	4 cut(s)	69, 282, 479, 1160
Hin1II	CATG	7 cut(s)	748, 850, 1046, 1153, 1171, 1246, 1278
HindIII	AAGCTT	2 cut(s)	777, 1488
HinfI	GANTC	4 cut(s)	151, 939, 957, 1450
HpaII	CCGG	4 cut(s)	69, 282, 479, 1160
HphI	GGTGA	3 cut(s)	247, 271, 1138
Hpy166II	GTNNAC	2 cut(s)	1249, 1360
Hpy188I	TCNGA	6 cut(s)	300, 424, 532, 537, 807, 1455
Hpy188III	TCNNGA	5 cut(s)	617, 871, 1096, 1289, 1463
Hpy8I	GTNNAC	2 cut(s)	1249, 1360
Hpy99I	CGWCG	1 cut(s)	925
HpyAV	CCTTC	2 cut(s)	262, 1017
HpyCH4III	ACNGT	3 cut(s)	340, 1089, 1177
HpyCH4IV	ACGT	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 176, 1121, 1343
HpyF3I	CTNAG	6 cut(s)	81, 405, 421, 1199, 1222, 1260
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	7 cut(s)	748, 850, 1046, 1153, 1171, 1246, 1278
Ksp22I	TGATCA	1 cut(s)	549
LguI	GCTCTTC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	1184
Lsp1109I	GCAGC	4 cut(s)	433, 580, 1321, 1447
LweI	GCATC	1 cut(s)	978
MabI	ACCWGGT	1 cut(s)	823
MaeI	CTAG	4 cut(s)	221, 462, 899, 1439
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	5 cut(s)	718, 771, 985, 1286, 1412
MboII	GAAGA	9 cut(s)	222, 223, 358, 926, 1025, 1135, 1183, 1186, 1490
MflI	RGATCY	1 cut(s)	867
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	7 cut(s)	185, 493, 578, 620, 908, 1351, 1366
MluNI	TGGCCA	1 cut(s)	378
MmeI	TCCRAC	2 cut(s)	809, 1261
Mox20I	TGGCCA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	1296
MslI	CAYNNNNRTG	2 cut(s)	743, 1154
Msp20I	TGGCCA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	4 cut(s)	69, 282, 479, 1160
MspR9I	CCNGG	4 cut(s)	70, 122, 825, 1407
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	3 cut(s)	122, 825, 1407
MwoI	GCNNNNNNNGC	4 cut(s)	20, 176, 1121, 1343
NciI	CCSGG	1 cut(s)	70
NcoI	CCATGG	2 cut(s)	744, 1274
NlaIII	CATG	7 cut(s)	748, 850, 1046, 1153, 1171, 1246, 1278
NmuCI	GTSAC	3 cut(s)	985, 1286, 1412
NspV	TTCGAA	1 cut(s)	1214
PciSI	GCTCTTC	1 cut(s)	205
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	4 cut(s)	151, 939, 957, 1450
PflMI	CCANNNNNTGG	2 cut(s)	93, 1280
PkrI	GCNGC	5 cut(s)	448, 595, 700, 1336, 1437
Psp6I	CCWGG	3 cut(s)	120, 823, 1405
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	3 cut(s)	120, 823, 1405
PspPI	GGNCC	5 cut(s)	118, 156, 315, 748, 803
PsuI	RGATCY	1 cut(s)	867
PvuII	CAGCTG	1 cut(s)	312
RsaI	GTAC	7 cut(s)	108, 245, 557, 733, 1091, 1248, 1361
RsaNI	GTAC	7 cut(s)	107, 244, 556, 732, 1090, 1247, 1360
RseI	CAYNNNNRTG	2 cut(s)	743, 1154
SapI	GCTCTTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	1296
SatI	GCNGC	5 cut(s)	447, 594, 699, 1335, 1436
Sau96I	GGNCC	5 cut(s)	118, 156, 315, 748, 803
ScaI	AGTACT	1 cut(s)	1091
ScrFI	CCNGG	4 cut(s)	70, 122, 825, 1407
SduI	GDGCHC	1 cut(s)	217
SexAI	ACCWGGT	1 cut(s)	823
SfaNI	GCATC	1 cut(s)	978
SfuI	TTCGAA	1 cut(s)	1214
SinI	GGWCC	2 cut(s)	748, 803
SmiMI	CAYNNNNRTG	2 cut(s)	743, 1154
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	7 cut(s)	185, 493, 578, 620, 908, 1351, 1366
SsiI	CCGC	2 cut(s)	143, 698
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	4 cut(s)	221, 462, 899, 1439
StyD4I	CCNGG	4 cut(s)	68, 120, 823, 1405
StyI	CCWWGG	2 cut(s)	744, 1274
TaaI	ACNGT	3 cut(s)	340, 1089, 1177
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	3 cut(s)	937, 1214, 1311
TaqII	GACCGA	1 cut(s)	1124
TasI	AATT	7 cut(s)	185, 493, 578, 620, 908, 1351, 1366
TatI	WGTACW	2 cut(s)	1089, 1359
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	4 cut(s)	151, 939, 957, 1450
Tru1I	TTAA	1 cut(s)	1296
Tru9I	TTAA	1 cut(s)	1296
TseFI	GTSAC	3 cut(s)	985, 1286, 1412
TseI	GCWGC	4 cut(s)	446, 593, 1334, 1435
Tsp45I	GTSAC	3 cut(s)	985, 1286, 1412
TspDTI	ATGAA	2 cut(s)	727, 848
Van91I	CCANNNNNTGG	2 cut(s)	93, 1280
VpaK11BI	GGWCC	2 cut(s)	748, 803
XapI	RAATTY	3 cut(s)	578, 908, 1351
XspI	CTAG	4 cut(s)	221, 462, 899, 1439
ZrmI	AGTACT	1 cut(s)	1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.