Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003229

Physical Location & Seq

Genomic Coordinates Forward (+)

8815775 .. 8819483

Gene Structure 3709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15610.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGGGACGATAGCCCTAACTGCAAGCATACACCAATTGAGACCCTCCCACGGGTGCGATGTTCAATCCCGGGATTGTCCTCAGCCCAAGACTTGGCAGTTGGCCGTACTCTTTATGGGCCTGGCTTTACTATCAATCGGGGCGGGTGGGATTCGGCCCTGCAACATTGCATTCGGTGCTGACCAATTTGACACCAGAACAGCAAAAGGAAGAGCACAACTAGAGAGCTTCTTCAACTGGTGGTACTTCTCCTTCACCATTGCTCTTGTTATAGCTCTCACCGGAGTTGTCTATATTCAGACCAACATCAGCTGGGCCATCGGGTTCGCTATCCCCACCGTCTGTCTTGCTTTCTCCATCACAATCTTCTTGCTTGGCCAACACGCCTACATTTACCTCAAGCCTCAGGGAAGTGTTTTCTCAGACGTAGCAAAAGTGATCGTAGCTGCTTGCAGGAAGTCAAGGGTTAGGGTTGCACCGGATACAGAGCCTAATTTTTATGATCCTCCTTTAGTTGATAATATTGGGTCAGATCAGAGACAAGTGATGATCAAGTACCCTCACACTAACAGGTTCAAATTCATTGACAGAGCTGCCATCATAACAAACCCTAATCAAGAATTGGACGATCAGTATAACCCTAAAAGTGAGTGGAGACTATGTAGCCTGCAACAAGTTGAGCAACTGAAGTTTCTGGTGGCGATCTTACCTGTTTGGGTTACAGCGATAGGTACTTTCATAACCATGGACCAAACTAACACCTTTGGAGTGTTACAAGCTTTGCAGATGGACAGATCAATAGGTCCGAAGTTTCTTTTCCCACCAGGTTGGATGAACATAACCTCCATGCTCGCACTTGCTATATGGATCTTGACTTACGAGAGGATTTACCTCCCTCTAGCCAAAAAATTCAGCAGATCGTCGCAAACCGATCTTCGATTCACAATGACACAGAGAATCAATACAGGCATCGTCCTTTCGGTTGTGACAATGGTGGTGTCTGGGATCGTAGAAGAACACAGAAGGAGATCTGCATTGAAGCATGGCTTGTTTGTTTCGCCCACAAGTTTCGCATTGCTGTTGCCACAGTACTTCTTGACGGGACTGACCGAGGCATTTTCTGCTGTTGCCATAATGGAGTTCTTCACCATGCAAATGCCGGAGAGCATGAGGACTGTTGCTGGAGCAATCTTCTTCCTTAGCTTGTCGGTTTCGAATTACTTAGGCTCGTTCATAGCCAACATGGTACACTATTGGAAGTTGAAGCATGATTGTACTCTGGAAGTATGGCTGGGGTTCTGGCTATTATTCTTAGGATTTCCAGCTGTTCCTATTACTGTACACTTTATCTTTTACTTTGTACTTTACTTGTATAGCTTCTCTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

463

Amino Acids

52.23

Weight (kDa)

9.08

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	2 - 419	1.8e-70	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28470 AT5G28470
fragaria_vesca	FvH4_5g15610 FvH4_5g15610 FvH4_5g15610 FvH4_5g15660 FvH4_5g15660 FvH4_5g15660 FvH4_6g12851
malus_domestica	MD04G1137500.v1.1 MD06G1186800.v1.1 MD12G1152300.v1.1 MD14G1193200.v1.1
prunus_persica	Prupe.5G185300_v2.0.a1 Prupe.6G263500_v2.0.a1 Prupe.6G263500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0464881 RchiOBHm_Chr7g0180471
rosa_laevigata	RLG00000005264 RLG00000024668
rosa_multiflora	Rmu_co8023650.1_g000001 Rmu_co8294651.1_g000001 Rmu_sc0003322.1_g000004 Rmu_sc0005690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272850 Rroxscaffold_6G00415380
rosa_rugosa	Rorug03G0074400 Rorug06G0433000
rosa_samantha	Rh3BG137300 Rh3CG139900 Rh3DG138700 Rh7AG034000 Rh7BG034000 Rh7CG035800 Rh7DG034400
rosa_wichuraiana	Rw3G011220 Rw7G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	93
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	3 cut(s)	497, 875, 1013
AcoI	YGGCCR	2 cut(s)	102, 376
AcsI	RAATTY	2 cut(s)	578, 908
AcuI	CTGAAG	1 cut(s)	707
AfaI	GTAC	9 cut(s)	108, 245, 557, 733, 1091, 1248, 1276, 1341, 1362
AfiI	CCNNNNNNNGG	3 cut(s)	50, 51, 93
AgsI	TTSAA	5 cut(s)	65, 235, 577, 1039, 1264
AjnI	CCWGG	2 cut(s)	120, 823
AloI	GAACNNNNNNTCC	2 cut(s)	827, 859
AluBI	AGCT	9 cut(s)	228, 275, 312, 446, 593, 779, 1203, 1325, 1377
AluI	AGCT	9 cut(s)	228, 275, 312, 446, 593, 779, 1203, 1325, 1377
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	3 cut(s)	34, 532, 649
AlwI	GGATC	3 cut(s)	497, 875, 1013
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	5 cut(s)	102, 118, 155, 315, 376
ApeKI	GCWGC	2 cut(s)	446, 593
ApoI	RAATTY	2 cut(s)	578, 908
AspS9I	GGNCC	5 cut(s)	118, 156, 315, 748, 803
AsuC2I	CCSGG	2 cut(s)	70, 71
AsuHPI	GGTGA	3 cut(s)	247, 271, 1138
AsuII	TTCGAA	1 cut(s)	1214
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	2 cut(s)	748, 803
AxyI	CCTNAGG	1 cut(s)	405
BalI	TGGCCA	1 cut(s)	378
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
Bbv12I	GWGCWC	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	433, 580
BccI	CCATC	4 cut(s)	326, 365, 605, 781
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	2 cut(s)	122, 825
BciVI	GTATCC	1 cut(s)	475
BclI	TGATCA	1 cut(s)	549
BcnI	CCSGG	2 cut(s)	70, 71
BcoDI	GTCTC	3 cut(s)	34, 532, 649
BfaI	CTAG	2 cut(s)	221, 899
BfuI	GTATCC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	1028
BisI	GCNGC	2 cut(s)	447, 594
BlsI	GCNGC	2 cut(s)	448, 595
BmcAI	AGTACT	1 cut(s)	1091
Bme1390I	CCNGG	4 cut(s)	70, 71, 122, 825
Bme18I	GGWCC	2 cut(s)	748, 803
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	5 cut(s)	118, 156, 315, 748, 803
BmrFI	CCNGG	4 cut(s)	70, 71, 122, 825
BmsI	GCATC	1 cut(s)	978
BpmI	CTGGAG	1 cut(s)	1203
Bpu10I	CCTNAGC	2 cut(s)	81, 1199
Bpu14I	TTCGAA	1 cut(s)	1214
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	2 cut(s)	70, 71
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	4 cut(s)	49, 69, 744, 1110
BsaWI	WCCGGW	2 cut(s)	281, 478
BsaXI	ACNNNNNCTCC	4 cut(s)	646, 676, 827, 857
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 51, 93
Bse1I	ACTGG	1 cut(s)	242
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	3 cut(s)	165, 258, 1073
BseBI	CCWGG	2 cut(s)	122, 825
BseDI	CCNNGG	4 cut(s)	49, 69, 744, 1110
BseGI	GGATG	1 cut(s)	837
BseLI	CCNNNNNNNGG	3 cut(s)	50, 51, 93
BseMI	GCAATG	3 cut(s)	165, 258, 1073
BseMII	CTCAG	3 cut(s)	95, 419, 435
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	433, 580
BseYI	CCCAGC	2 cut(s)	312, 1291
BshFI	GGCC	5 cut(s)	104, 120, 157, 317, 378
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	4 cut(s)	70, 282, 479, 1160
BslFI	GGGAC	2 cut(s)	19, 1116
BslI	CCNNNNNNNGG	3 cut(s)	50, 51, 93
BsmAI	GTCTC	3 cut(s)	34, 532, 649
BsmFI	GGGAC	2 cut(s)	19, 1116
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	5 cut(s)	104, 120, 157, 317, 378
Bso31I	GGTCTC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	1214
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp1407I	TGTACA	1 cut(s)	1339
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	5 cut(s)	104, 120, 157, 317, 378
BspCNI	CTCAG	3 cut(s)	94, 418, 434
BspPI	GGATC	3 cut(s)	497, 875, 1013
BspQI	GCTCTTC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	1214
BspTNI	GGTCTC	1 cut(s)	34
BsrDI	GCAATG	3 cut(s)	165, 258, 1073
BsrGI	TGTACA	1 cut(s)	1339
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	4 cut(s)	49, 69, 744, 1110
BssT1I	CCWWGG	1 cut(s)	744
Bst2UI	CCWGG	2 cut(s)	122, 825
Bst4CI	ACNGT	4 cut(s)	340, 1089, 1177, 1339
Bst6I	CTCTTC	1 cut(s)	205
BstAPI	GCANNNNNTGC	2 cut(s)	176, 1121
BstAUI	TGTACA	1 cut(s)	1339
BstBI	TTCGAA	1 cut(s)	1214
BstC8I	GCNNGC	4 cut(s)	25, 451, 668, 852
BstDEI	CTNAG	6 cut(s)	81, 405, 421, 1199, 1222, 1312
BstDSI	CCRYGG	2 cut(s)	49, 744
BstF5I	GGATG	1 cut(s)	837
BstMAI	GTCTC	3 cut(s)	34, 532, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 176, 1121
BstNI	CCWGG	2 cut(s)	122, 825
BstSCI	CCNGG	4 cut(s)	68, 69, 120, 823
BstV1I	GCAGC	2 cut(s)	433, 580
BstX2I	RGATCY	2 cut(s)	867, 1028
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	2 cut(s)	867, 1028
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	5 cut(s)	104, 120, 157, 317, 378
BtgI	CCRYGG	2 cut(s)	49, 744
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	837
Cac8I	GCNNGC	4 cut(s)	25, 451, 668, 852
Cfr13I	GGNCC	5 cut(s)	118, 156, 315, 748, 803
Cfr9I	CCCGGG	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	823
Csp6I	GTAC	9 cut(s)	107, 244, 556, 732, 1090, 1247, 1275, 1340, 1361
CviAII	CATG	7 cut(s)	745, 847, 1043, 1150, 1168, 1243, 1268
CviQI	GTAC	9 cut(s)	107, 244, 556, 732, 1090, 1247, 1275, 1340, 1361
DdeI	CTNAG	6 cut(s)	81, 405, 421, 1199, 1222, 1312
EaeI	YGGCCR	2 cut(s)	102, 376
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	744
Eco31I	GGTCTC	1 cut(s)	34
Eco47I	GGWCC	2 cut(s)	748, 803
Eco57I	CTGAAG	1 cut(s)	707
Eco81I	CCTNAGG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	120, 823
EcoT14I	CCWWGG	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	7 cut(s)	748, 850, 1046, 1153, 1171, 1246, 1271
FalI	AAGNNNNNCTT	2 cut(s)	1031, 1063
FaqI	GGGAC	2 cut(s)	19, 1116
FatI	CATG	7 cut(s)	744, 846, 1042, 1149, 1167, 1242, 1267
FauI	CCCGC	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	549
Fnu4HI	GCNGC	2 cut(s)	447, 594
FokI	GGATG	1 cut(s)	844
Fsp4HI	GCNGC	2 cut(s)	447, 594
FspBI	CTAG	2 cut(s)	221, 899
GluI	GCNGC	2 cut(s)	447, 594
GsaI	CCCAGC	2 cut(s)	316, 1295
GsuI	CTGGAG	1 cut(s)	1203
HaeIII	GGCC	5 cut(s)	104, 120, 157, 317, 378
HapII	CCGG	4 cut(s)	70, 282, 479, 1160
Hin1II	CATG	7 cut(s)	748, 850, 1046, 1153, 1171, 1246, 1271
HindIII	AAGCTT	1 cut(s)	777
HinfI	GANTC	3 cut(s)	151, 939, 957
HpaII	CCGG	4 cut(s)	70, 282, 479, 1160
HphI	GGTGA	3 cut(s)	247, 271, 1138
Hpy166II	GTNNAC	2 cut(s)	1249, 1342
Hpy188I	TCNGA	5 cut(s)	300, 424, 532, 537, 807
Hpy188III	TCNNGA	4 cut(s)	617, 871, 1096, 1280
Hpy8I	GTNNAC	2 cut(s)	1249, 1342
Hpy99I	CGWCG	1 cut(s)	925
HpyAV	CCTTC	2 cut(s)	262, 1017
HpyCH4III	ACNGT	4 cut(s)	340, 1089, 1177, 1339
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	9 cut(s)	23, 162, 170, 453, 476, 670, 784, 1034, 1153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 176, 1121
HpyF3I	CTNAG	6 cut(s)	81, 405, 421, 1199, 1222, 1312
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	7 cut(s)	748, 850, 1046, 1153, 1171, 1246, 1271
Ksp22I	TGATCA	1 cut(s)	549
LguI	GCTCTTC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	1184
Lsp1109I	GCAGC	2 cut(s)	433, 580
LweI	GCATC	1 cut(s)	978
MabI	ACCWGGT	1 cut(s)	823
MaeI	CTAG	2 cut(s)	221, 899
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	3 cut(s)	718, 771, 985
MboII	GAAGA	8 cut(s)	222, 223, 358, 926, 1025, 1135, 1183, 1186
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	2 cut(s)	867, 1028
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	7 cut(s)	35, 185, 493, 578, 620, 908, 1216
MluNI	TGGCCA	1 cut(s)	378
MmeI	TCCRAC	1 cut(s)	809
Mox20I	TGGCCA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	378
MslI	CAYNNNNRTG	2 cut(s)	743, 1154
Msp20I	TGGCCA	1 cut(s)	378
MspA1I	CMGCKG	2 cut(s)	312, 1325
MspI	CCGG	4 cut(s)	70, 282, 479, 1160
MspR9I	CCNGG	4 cut(s)	70, 71, 122, 825
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	2 cut(s)	122, 825
MwoI	GCNNNNNNNGC	3 cut(s)	20, 176, 1121
NciI	CCSGG	2 cut(s)	70, 71
NcoI	CCATGG	1 cut(s)	744
NlaIII	CATG	7 cut(s)	748, 850, 1046, 1153, 1171, 1246, 1271
NmuCI	GTSAC	1 cut(s)	985
NspV	TTCGAA	1 cut(s)	1214
PciSI	GCTCTTC	1 cut(s)	205
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	151, 939, 957
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	448, 595
Psp6I	CCWGG	2 cut(s)	120, 823
PspFI	CCCAGC	2 cut(s)	312, 1291
PspGI	CCWGG	2 cut(s)	120, 823
PspPI	GGNCC	5 cut(s)	118, 156, 315, 748, 803
PsuI	RGATCY	2 cut(s)	867, 1028
PvuII	CAGCTG	2 cut(s)	312, 1325
RsaI	GTAC	9 cut(s)	108, 245, 557, 733, 1091, 1248, 1276, 1341, 1362
RsaNI	GTAC	9 cut(s)	107, 244, 556, 732, 1090, 1247, 1275, 1340, 1361
RseI	CAYNNNNRTG	2 cut(s)	743, 1154
SapI	GCTCTTC	1 cut(s)	205
SatI	GCNGC	2 cut(s)	447, 594
Sau96I	GGNCC	5 cut(s)	118, 156, 315, 748, 803
ScaI	AGTACT	1 cut(s)	1091
ScrFI	CCNGG	4 cut(s)	70, 71, 122, 825
SduI	GDGCHC	1 cut(s)	217
SexAI	ACCWGGT	1 cut(s)	823
SfaNI	GCATC	1 cut(s)	978
SfuI	TTCGAA	1 cut(s)	1214
SinI	GGWCC	2 cut(s)	748, 803
SmaI	CCCGGG	1 cut(s)	71
SmiMI	CAYNNNNRTG	2 cut(s)	743, 1154
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	7 cut(s)	35, 185, 493, 578, 620, 908, 1216
SsiI	CCGC	1 cut(s)	143
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	2 cut(s)	221, 899
StyD4I	CCNGG	4 cut(s)	68, 69, 120, 823
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	4 cut(s)	340, 1089, 1177, 1339
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	2 cut(s)	937, 1214
TaqII	GACCGA	1 cut(s)	1124
TasI	AATT	7 cut(s)	35, 185, 493, 578, 620, 908, 1216
TatI	WGTACW	4 cut(s)	1089, 1274, 1339, 1360
TfiI	GAWTC	3 cut(s)	151, 939, 957
TseFI	GTSAC	1 cut(s)	985
TseI	GCWGC	2 cut(s)	446, 593
Tsp45I	GTSAC	1 cut(s)	985
TspDTI	ATGAA	4 cut(s)	571, 727, 848, 1222
TspMI	CCCGGG	1 cut(s)	69
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	748, 803
XapI	RAATTY	2 cut(s)	578, 908
XmaI	CCCGGG	1 cut(s)	69
XspI	CTAG	2 cut(s)	221, 899
ZrmI	AGTACT	1 cut(s)	1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.