Rmu_sc0003322.1_g000004

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003322.1
Physical Location & Seq
Reverse (-)
19213 .. 22133
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003322.1_g000004.1.cds

Sequence Viewer

Length: 1830 bp
atggagatgaatgtgtacaagtcttcttcttctccagaagctcatcaagaccctccaaaaccacctcgtcctgctagaaaaaaatcaccaggaggatggagagcaatcaaatacattctagggaatgagtcgtttgagaagctggcgtccatgagcttgatagctaacatgactgtgtaccttaccacaaagtacaatctgagtggtatatttatggtaaatgtggttaacatatggaatggttcctccaacgttgcttcactagccggtgctttcgtttctgatacttatctgggcagatttcgtactcttctctttggctgcttctcatctcttctgggtatggggacgatagccctaaccgcaagcataccccaattaagaccctcccacggctgccacggtcaatctcaagattgccctcagcccaacagttggcagctggccatactcttcatgggcctgggcttactatcaattggagcgggtgggattaggccctgcaacattgcatttggtgctgaccaatttgacaccagaacagccaaaggaagagcacaactagagagcttcttcaattggtggtacttctccttcaccgttgctcttattatagctctcaccggagttgtgtatattcagaccaacatcagctgggccgtagggtttggtacccccaccgcctgtcttgccttctccatcacaatcttcttgcttggccaacacgcctacatttacatgaagccccagggaagcattttctcagacgtagcaaaagtgatcatagctgcttgtaggaagtctagggtcagggtcgcaccggattcggagcccaacttttatgatcctcctttggttgataatgggtgtgagagacaagtggtgatcaagtaccctcacactaataggttcaaattccttgacagagctgccatcataacaaaccctaatcaagaattggacgatctgtgtaagcctaaaagtgggtggagactatgtagccttcaacaagttgagcagttgaagtttctggtagcgatcttaccggtttgggtaacagcaattggtactttcataaccatggaccaaatgaacacttttggagtgctacaagctttgcaaatggacagatcaataggacccaaatttcatttcccaccgggttggatgaacataacctccatgctcgcacttgctacatggatcttcacttatgagaggatttacctccctctagccaaaaaattcagcagatcatcgtcaaccgatctccgattcacaatgcagcagagaatcaatacaggcatcgtcctttcgattttgacaatgttggtgtctgggatcgtagaggaacacagaaggaaatcagcattgaagcatggctcgtacatttcgcccacaagtttcgcattgctgttgccacagtacttcttgacgggcctgaccgagtctttttctgctgttgccataatggagttcttcaccatgcaaatgccggagagcatgagaactgttgctggggcagtcttcttccttagcttatctgtgtcaaattacttaggctcattcatagtgaacatggtccacaaggcgactgagggcaaatcgccgtgggtaggtggtcacgaccttaacaagaacaagctcgactgctactactacatcattgctggtttgggagctctgaatctcgtatacttcaatttgtttgcaagacattatgtgttggtcggtaaacagcctggtcatgatagtgggaaaggagaagtgcagctagagaatccgaatccaattgctcgtgatagttcaaacgatgagaacaaagtttaa

Protein Analysis

609

Amino Acids

67.64

Weight (kDa)

9.26

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 671
AccB1I GGYRCC 1 cut(s) 671
AccB7I CCANNNNNTGG 1 cut(s) 435
AccBSI CCGCTC 1 cut(s) 485
AccI GTMKAC 1 cut(s) 1695
AciI CCGC 3 cut(s) 363, 485, 681
AclI AACGTT 1 cut(s) 252
AclWI GGATC 3 cut(s) 839, 1211, 1349
AcoI YGGCCR 2 cut(s) 444, 718
AcsI RAATTY 3 cut(s) 914, 1145, 1244
AcyI GRCGYC 1 cut(s) 146
AfiI CCNNNNNNNGG 4 cut(s) 392, 435, 983, 1616
AgeI ACCGGT 1 cut(s) 1045
AgsI TTSAA 7 cut(s) 577, 913, 1007, 1024, 1375, 1702, 1809
AjnI CCWGG 4 cut(s) 88, 462, 747, 1741
AjuI GAANNNNNNNTTGG 2 cut(s) 1136, 1168
AloI GAACNNNNNNTCC 2 cut(s) 1163, 1195
Alw21I GWGCWC 2 cut(s) 559, 1684
Alw26I GTCTC 2 cut(s) 868, 985
AlwI GGATC 3 cut(s) 839, 1211, 1349
AoxI GGCC 6 cut(s) 444, 460, 497, 657, 718, 1438
ApeKI GCWGC 7 cut(s) 321, 396, 439, 788, 929, 1285, 1771
ApoI RAATTY 3 cut(s) 914, 1145, 1244
AsiGI ACCGGT 1 cut(s) 1045
Asp718I GGTACC 1 cut(s) 671
AspS9I GGNCC 7 cut(s) 460, 498, 657, 1084, 1139, 1438, 1582
AsuC2I CCSGG 1 cut(s) 1161
AsuHPI GGTGA 5 cut(s) 78, 589, 613, 895, 1474
AvaII GGWCC 3 cut(s) 1084, 1139, 1582
BalI TGGCCA 2 cut(s) 446, 720
BanI GGYRCC 1 cut(s) 671
BanII GRGCYC 2 cut(s) 834, 1684
BarI GAAGNNNNNNTAC 2 cut(s) 578, 610
BauI CACGAG 1 cut(s) 1797
BbsI GAAGAC 2 cut(s) 15, 1519
Bbv12I GWGCWC 2 cut(s) 559, 1684
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 7 cut(s) 308, 383, 451, 775, 916, 1297, 1783
BccI CCATC 3 cut(s) 90, 707, 941
BceAI ACGGC 3 cut(s) 409, 644, 1594
BcgI CGANNNNNNTGC 2 cut(s) 807, 841
BciT130I CCWGG 4 cut(s) 90, 464, 749, 1743
BclI TGATCA 2 cut(s) 780, 885
BcnI CCSGG 1 cut(s) 1161
BcoDI GTCTC 2 cut(s) 868, 985
BfaI CTAG 7 cut(s) 75, 119, 263, 563, 804, 1235, 1775
BisI GCNGC 7 cut(s) 322, 397, 440, 789, 930, 1286, 1772
BlsI GCNGC 7 cut(s) 323, 398, 441, 790, 931, 1287, 1773
BmcAI AGTACT 1 cut(s) 1427
Bme1390I CCNGG 5 cut(s) 90, 464, 749, 1161, 1743
Bme18I GGWCC 3 cut(s) 1084, 1139, 1582
BmgT120I GGNCC 7 cut(s) 460, 498, 657, 1084, 1139, 1438, 1582
BmiI GGNNCC 4 cut(s) 244, 673, 831, 1141
BmrFI CCNGG 5 cut(s) 90, 464, 749, 1161, 1743
BmsI GCATC 1 cut(s) 1314
BpiI GAAGAC 2 cut(s) 15, 1519
BpmI CTGGAG 1 cut(s) 18
Bpu10I CCTNAGC 2 cut(s) 423, 1535
BpuEI CTTGAG 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 1161
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 7 cut(s) 391, 400, 463, 747, 748, 1080, 1610
BsaWI WCCGGW 3 cut(s) 623, 820, 1045
BsaXI ACNNNNNCTCC 4 cut(s) 982, 1012, 1163, 1193
Bsc4I CCNNNNNNNGG 4 cut(s) 392, 435, 983, 1616
Bse118I RCCGGY 2 cut(s) 266, 1045
Bse3DI GCAATG 3 cut(s) 507, 1409, 1665
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 4 cut(s) 90, 464, 749, 1743
BseDI CCNNGG 7 cut(s) 391, 400, 463, 747, 748, 1080, 1610
BseGI GGATG 2 cut(s) 101, 1173
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 4 cut(s) 392, 435, 983, 1616
BseMI GCAATG 3 cut(s) 507, 1409, 1665
BseMII CTCAG 4 cut(s) 191, 437, 777, 1587
BseXI GCAGC 7 cut(s) 308, 383, 451, 775, 916, 1297, 1783
BseYI CCCAGC 2 cut(s) 654, 1517
BsgI GTGCAG 1 cut(s) 1790
BshFI GGCC 6 cut(s) 446, 462, 499, 659, 720, 1440
BshNI GGYRCC 1 cut(s) 671
BshTI ACCGGT 1 cut(s) 1045
BsiHKAI GWGCWC 2 cut(s) 559, 1684
BsiSI CCGG 6 cut(s) 267, 624, 821, 1046, 1160, 1496
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 4 cut(s) 392, 435, 983, 1616
BsmAI GTCTC 2 cut(s) 868, 985
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 6 cut(s) 446, 462, 499, 659, 720, 1440
Bsp1286I GDGCHC 3 cut(s) 559, 834, 1684
Bsp1407I TGTACA 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 1080
BspACI CCGC 3 cut(s) 363, 485, 681
BspANI GGCC 6 cut(s) 446, 462, 499, 659, 720, 1440
BspCNI CTCAG 4 cut(s) 192, 436, 776, 1588
BspHI TCATGA 1 cut(s) 1747
BspLI GGNNCC 4 cut(s) 244, 673, 831, 1141
BspPI GGATC 3 cut(s) 839, 1211, 1349
BspQI GCTCTTC 1 cut(s) 547
BspT107I GGYRCC 1 cut(s) 671
BsrBI CCGCTC 1 cut(s) 485
BsrDI GCAATG 3 cut(s) 507, 1409, 1665
BsrFI RCCGGY 2 cut(s) 266, 1045
BsrGI TGTACA 1 cut(s) 15
BssAI RCCGGY 2 cut(s) 266, 1045
BssECI CCNNGG 7 cut(s) 391, 400, 463, 747, 748, 1080, 1610
BssNAI GTATAC 1 cut(s) 1696
BssNI GRCGYC 1 cut(s) 146
BssSI CACGAG 1 cut(s) 1797
BssT1I CCWWGG 1 cut(s) 1080
Bst1107I GTATAC 1 cut(s) 1696
Bst2BI CACGAG 1 cut(s) 1797
Bst2UI CCWGG 4 cut(s) 90, 464, 749, 1743
Bst4CI ACNGT 6 cut(s) 175, 404, 434, 601, 1425, 1513
Bst6I CTCTTC 4 cut(s) 315, 339, 458, 547
BstACI GRCGYC 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 15
BstC8I GCNNGC 4 cut(s) 144, 367, 444, 1188
BstDEI CTNAG 6 cut(s) 200, 423, 763, 1535, 1558, 1596
BstDSI CCRYGG 4 cut(s) 391, 400, 1080, 1610
BstF5I GGATG 2 cut(s) 101, 1173
BstMAI GTCTC 2 cut(s) 868, 985
BstMWI GCNNNNNNNGC 4 cut(s) 263, 362, 518, 689
BstNI CCWGG 4 cut(s) 90, 464, 749, 1743
BstSCI CCNGG 5 cut(s) 88, 462, 747, 1159, 1741
BstV1I GCAGC 7 cut(s) 308, 383, 451, 775, 916, 1297, 1783
BstV2I GAAGAC 2 cut(s) 15, 1519
BstX2I RGATCY 1 cut(s) 1203
BstXI CCANNNNNNTGG 2 cut(s) 96, 1164
BstYI RGATCY 1 cut(s) 1203
BstZ17I GTATAC 1 cut(s) 1696
BsuRI GGCC 6 cut(s) 446, 462, 499, 659, 720, 1440
BtgI CCRYGG 4 cut(s) 391, 400, 1080, 1610
BtsCI GGATG 2 cut(s) 101, 1173
Cac8I GCNNGC 4 cut(s) 144, 367, 444, 1188
CciI TCATGA 1 cut(s) 1747
Cfr10I RCCGGY 2 cut(s) 266, 1045
Cfr13I GGNCC 7 cut(s) 460, 498, 657, 1084, 1139, 1438, 1582
CseI GACGC 1 cut(s) 135
CspAI ACCGGT 1 cut(s) 1045
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
DdeI CTNAG 6 cut(s) 200, 423, 763, 1535, 1558, 1596
EaeI YGGCCR 2 cut(s) 444, 718
Eam1104I CTCTTC 4 cut(s) 315, 339, 458, 547
EarI CTCTTC 4 cut(s) 315, 339, 458, 547
Ecl136II GAGCTC 1 cut(s) 1682
Eco130I CCWWGG 1 cut(s) 1080
Eco24I GRGCYC 2 cut(s) 834, 1684
Eco47I GGWCC 3 cut(s) 1084, 1139, 1582
Eco53kI GAGCTC 1 cut(s) 1682
EcoICRI GAGCTC 1 cut(s) 1682
EcoO109I RGGNCCY 2 cut(s) 498, 1139
EcoRII CCWGG 4 cut(s) 88, 462, 747, 1741
EcoT14I CCWWGG 1 cut(s) 1080
EcoT38I GRGCYC 2 cut(s) 834, 1684
ErhI CCWWGG 1 cut(s) 1080
FaqI GGGAC 1 cut(s) 361
FauI CCCGC 1 cut(s) 478
FauNDI CATATG 1 cut(s) 233
FbaI TGATCA 2 cut(s) 780, 885
FblI GTMKAC 1 cut(s) 1695
Fnu4HI GCNGC 7 cut(s) 322, 397, 440, 789, 930, 1286, 1772
FokI GGATG 2 cut(s) 108, 1180
FriOI GRGCYC 2 cut(s) 834, 1684
Fsp4HI GCNGC 7 cut(s) 322, 397, 440, 789, 930, 1286, 1772
FspBI CTAG 7 cut(s) 75, 119, 263, 563, 804, 1235, 1775
GluI GCNGC 7 cut(s) 322, 397, 440, 789, 930, 1286, 1772
GsaI CCCAGC 2 cut(s) 658, 1521
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 6 cut(s) 446, 462, 499, 659, 720, 1440
HapII CCGG 6 cut(s) 267, 624, 821, 1046, 1160, 1496
HgaI GACGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 146
HincII GTYRAC 2 cut(s) 229, 1263
HindII GTYRAC 2 cut(s) 229, 1263
HindIII AAGCTT 1 cut(s) 1113
HinfI GANTC 8 cut(s) 128, 824, 1275, 1293, 1448, 1687, 1780, 1786
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 6 cut(s) 267, 624, 821, 1046, 1160, 1496
HphI GGTGA 5 cut(s) 78, 589, 613, 895, 1474
Hpy166II GTNNAC 8 cut(s) 16, 178, 229, 1263, 1576, 1585, 1696, 1736
Hpy188I TCNGA 8 cut(s) 201, 283, 642, 766, 829, 1274, 1686, 1785
Hpy188III TCNNGA 8 cut(s) 35, 47, 413, 953, 1432, 1625, 1748, 1799
Hpy8I GTNNAC 8 cut(s) 16, 178, 229, 1263, 1576, 1585, 1696, 1736
HpyAV CCTTC 4 cut(s) 604, 703, 1013, 1353
HpyCH4III ACNGT 6 cut(s) 175, 404, 434, 601, 1425, 1513
HpyCH4IV ACGT 2 cut(s) 252, 768
HpyCH4V TGCA 7 cut(s) 504, 512, 1120, 1285, 1489, 1712, 1771
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 362, 518, 689
HpyF3I CTNAG 6 cut(s) 200, 423, 763, 1535, 1558, 1596
HpySE526I ACGT 2 cut(s) 252, 768
Hsp92I GRCGYC 1 cut(s) 146
KpnI GGTACC 1 cut(s) 675
Ksp22I TGATCA 2 cut(s) 780, 885
KspAI GTTAAC 1 cut(s) 229
LguI GCTCTTC 1 cut(s) 547
LmnI GCTCC 3 cut(s) 482, 829, 1679
Lsp1109I GCAGC 7 cut(s) 308, 383, 451, 775, 916, 1297, 1783
LweI GCATC 1 cut(s) 1314
MaeI CTAG 7 cut(s) 75, 119, 263, 563, 804, 1235, 1775
MaeII ACGT 2 cut(s) 252, 768
MaeIII GTNAC 2 cut(s) 1054, 1622
MbiI CCGCTC 1 cut(s) 485
MfeI CAATTG 4 cut(s) 477, 577, 1062, 1791
MflI RGATCY 1 cut(s) 1203
MhlI GDGCHC 3 cut(s) 559, 834, 1684
MlsI TGGCCA 2 cut(s) 446, 720
MluNI TGGCCA 2 cut(s) 446, 720
MlyI GAGTC 2 cut(s) 137, 1457
MmeI TCCRAC 2 cut(s) 273, 1145
Mox20I TGGCCA 2 cut(s) 446, 720
MscI TGGCCA 2 cut(s) 446, 720
MseI TTAA 4 cut(s) 228, 380, 1632, 1828
MslI CAYNNNNRTG 5 cut(s) 173, 737, 1079, 1490, 1752
Msp20I TGGCCA 2 cut(s) 446, 720
MspA1I CMGCKG 2 cut(s) 442, 654
MspI CCGG 6 cut(s) 267, 624, 821, 1046, 1160, 1496
MspR9I CCNGG 5 cut(s) 90, 464, 749, 1161, 1743
MunI CAATTG 4 cut(s) 477, 577, 1062, 1791
MvaI CCWGG 4 cut(s) 90, 464, 749, 1743
MwoI GCNNNNNNNGC 4 cut(s) 263, 362, 518, 689
NciI CCSGG 1 cut(s) 1161
NcoI CCATGG 1 cut(s) 1080
NdeI CATATG 1 cut(s) 233
NlaIV GGNNCC 4 cut(s) 244, 673, 831, 1141
NmuCI GTSAC 1 cut(s) 1622
PagI TCATGA 1 cut(s) 1747
PasI CCCWGGG 1 cut(s) 748
PciSI GCTCTTC 1 cut(s) 547
PfeI GAWTC 6 cut(s) 824, 1275, 1293, 1687, 1780, 1786
PflFI GACNNNGTC 1 cut(s) 1447
PflMI CCANNNNNTGG 1 cut(s) 435
PinAI ACCGGT 1 cut(s) 1045
PkrI GCNGC 7 cut(s) 323, 398, 441, 790, 931, 1287, 1773
PleI GAGTC 2 cut(s) 136, 1456
PpsI GAGTC 2 cut(s) 136, 1456
PpuMI RGGWCCY 1 cut(s) 1139
Psp124BI GAGCTC 1 cut(s) 1684
Psp1406I AACGTT 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 1139
Psp6I CCWGG 4 cut(s) 88, 462, 747, 1741
PspFI CCCAGC 2 cut(s) 654, 1517
PspGI CCWGG 4 cut(s) 88, 462, 747, 1741
PspN4I GGNNCC 4 cut(s) 244, 673, 831, 1141
PspPI GGNCC 7 cut(s) 460, 498, 657, 1084, 1139, 1438, 1582
PspPPI RGGWCCY 1 cut(s) 1139
PsuI RGATCY 1 cut(s) 1203
PsyI GACNNNGTC 1 cut(s) 1447
PvuII CAGCTG 2 cut(s) 442, 654
RseI CAYNNNNRTG 5 cut(s) 173, 737, 1079, 1490, 1752
SacI GAGCTC 1 cut(s) 1684
SapI GCTCTTC 1 cut(s) 547
SaqAI TTAA 4 cut(s) 228, 380, 1632, 1828
SatI GCNGC 7 cut(s) 322, 397, 440, 789, 930, 1286, 1772
Sau96I GGNCC 7 cut(s) 460, 498, 657, 1084, 1139, 1438, 1582
ScaI AGTACT 1 cut(s) 1427
SchI GAGTC 2 cut(s) 137, 1457
ScrFI CCNGG 5 cut(s) 90, 464, 749, 1161, 1743
SduI GDGCHC 3 cut(s) 559, 834, 1684
SfaNI GCATC 1 cut(s) 1314
SinI GGWCC 3 cut(s) 1084, 1139, 1582
SmiMI CAYNNNNRTG 5 cut(s) 173, 737, 1079, 1490, 1752
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
SsiI CCGC 3 cut(s) 363, 485, 681
SspMI CTAG 7 cut(s) 75, 119, 263, 563, 804, 1235, 1775
SstI GAGCTC 1 cut(s) 1684
StyD4I CCNGG 5 cut(s) 88, 462, 747, 1159, 1741
StyI CCWWGG 1 cut(s) 1080
TaaI ACNGT 6 cut(s) 175, 404, 434, 601, 1425, 1513
TaiI ACGT 2 cut(s) 255, 771
TaqI TCGA 2 cut(s) 1316, 1647
TaqII GACCGA 1 cut(s) 1460
TatI WGTACW 3 cut(s) 15, 192, 1425
TfiI GAWTC 6 cut(s) 824, 1275, 1293, 1687, 1780, 1786
Tru1I TTAA 4 cut(s) 228, 380, 1632, 1828
Tru9I TTAA 4 cut(s) 228, 380, 1632, 1828
TseFI GTSAC 1 cut(s) 1622
TseI GCWGC 7 cut(s) 321, 396, 439, 788, 929, 1285, 1771
Tsp45I GTSAC 1 cut(s) 1622
TspDTI ATGAA 8 cut(s) 23, 445, 755, 1063, 1106, 1139, 1184, 1558
Tth111I GACNNNGTC 1 cut(s) 1447
Van91I CCANNNNNTGG 1 cut(s) 435
VpaK11BI GGWCC 3 cut(s) 1084, 1139, 1582
XapI RAATTY 3 cut(s) 914, 1145, 1244
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 1695
XspI CTAG 7 cut(s) 75, 119, 263, 563, 804, 1235, 1775
ZrmI AGTACT 1 cut(s) 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.